EWM25587.1, cds5088 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
Homology
BLAST of EWM25587.1 vs. NCBI_GenBank
Match: gi|585107376|gb|EWM25587.1| (hypothetical protein Naga_100377g3 [Nannochloropsis gaditana] >gi|585107377|gb|EWM25588.1| hypothetical protein Naga_100377g3 [Nannochloropsis gaditana]) HSP 1 Score: 443.736 bits (1140), Expect = 1.097e-157 Identity = 216/216 (100.00%), Postives = 216/216 (100.00%), Query Frame = 0
Query: 1 MWNGTRGTVGISRILRRTTFSMKSILFPRLYPIPSAHPPQTELDASLDALAEDAKCGAVWTTFSDTISTAEFNLMPLAGQVKALEAFCATPCGPSFDKAVTEWRNWCDSKKATFTPMDDVDEDEDEDEDMPVTFDGFVAEFGCSKSAGGQFCAQLVMAEIAAKPDDLETKCDYYSSCCFGELNRIVKVTDLESRASALDAKCPGARAALESKCATA 216
MWNGTRGTVGISRILRRTTFSMKSILFPRLYPIPSAHPPQTELDASLDALAEDAKCGAVWTTFSDTISTAEFNLMPLAGQVKALEAFCATPCGPSFDKAVTEWRNWCDSKKATFTPMDDVDEDEDEDEDMPVTFDGFVAEFGCSKSAGGQFCAQLVMAEIAAKPDDLETKCDYYSSCCFGELNRIVKVTDLESRASALDAKCPGARAALESKCATA
Sbjct: 1 MWNGTRGTVGISRILRRTTFSMKSILFPRLYPIPSAHPPQTELDASLDALAEDAKCGAVWTTFSDTISTAEFNLMPLAGQVKALEAFCATPCGPSFDKAVTEWRNWCDSKKATFTPMDDVDEDEDEDEDMPVTFDGFVAEFGCSKSAGGQFCAQLVMAEIAAKPDDLETKCDYYSSCCFGELNRIVKVTDLESRASALDAKCPGARAALESKCATA 216
BLAST of EWM25587.1 vs. NCBI_GenBank
Match: gi|585107375|gb|EWM25586.1| (hypothetical protein Naga_100377g5 [Nannochloropsis gaditana]) HSP 1 Score: 191.43 bits (485), Expect = 2.042e-56 Identity = 94/188 (50.00%), Postives = 126/188 (67.02%), Query Frame = 0
Query: 29 RLYPIPSAHPPQTELDASLDALAEDAKCGAVWTTFSDTISTAEFNLMPLAGQVKALEAFCATPCGPSFDKAVTEWRNWCDSKKATFTPMDDVDEDEDEDEDMPVTFDGFVAEFGCSKSAG--GQFCAQLVMAEIAAKPDDLETKCDYYSSCCFGELNRIVKVTDLESRASALDAKCPGARAALESKCA 214
R P+ SA T LD SL AL +C A TTFS T+ F+ +PL QV AL+ FC TPCGP F+KA+T+WR WCD +A+F P+ +FDGFV+ FGC+KSAG G++CA+LVM ++ AKP+D T+C YY+SCCFGE++R+V +TDL++ A+ L+AKCPG AAL +KCA
Sbjct: 164 RPVPLVSALCNMTMLDQSLIALTTVPQCQAPMTTFSTTLEGENFSGLPLPDQVTALDTFCQTPCGPLFNKAITDWRTWCDLNRASFVPLSGGMGGM-------YSFDGFVSNFGCTKSAGPNGEYCAKLVMEQLMAKPEDTATRCAYYTSCCFGEMHRLVTLTDLKAHAAMLEAKCPGTTAALTTKCA 344
BLAST of EWM25587.1 vs. NCBI_GenBank
Match: gi|553179492|ref|XP_005852709.1| (hypothetical protein NGA_0697600 [Nannochloropsis gaditana CCMP526] >gi|422295824|gb|EKU23123.1| hypothetical protein NGA_0697600 [Nannochloropsis gaditana CCMP526]) HSP 1 Score: 87.4261 bits (215), Expect = 6.213e-19 Identity = 43/51 (84.31%), Postives = 45/51 (88.24%), Query Frame = 0
Query: 32 PIPSAHPPQTELDASLDALAEDAKCGAVWTTFSDTISTAEFNLMPLAGQVK 82
P+ + TELDASLDALAEDAKCGAVWTTFSDTISTAEFNLMPLAGQVK
Sbjct: 37 PMVARSCNATELDASLDALAEDAKCGAVWTTFSDTISTAEFNLMPLAGQVK 87
BLAST of EWM25587.1 vs. NCBI_GenBank
Match: gi|585108494|gb|EWM26447.1| (hypothetical protein Naga_100144g4 [Nannochloropsis gaditana]) HSP 1 Score: 89.3521 bits (220), Expect = 2.815e-17 Identity = 60/235 (25.53%), Postives = 96/235 (40.85%), Query Frame = 0
Query: 41 TELDASLDALAEDAKCGAVWTTFSDTISTAEFNLMPLAGQVKALEAFCATPCGPSFDKAVTEWRNWCD-------------------------SKKATFTPMDDVDEDEDEDEDMPVTFDGFVAEFGCSK-SAGGQFCAQLVMAEIAA----------------------KPDDLET-------------KCDYYSSCCFGELNRIVKVTDLESRASALDAKCPGARAALESKCA 214
T +D +D L + C W F D I + FN L Q + +FCA+PCGP FD+ V E+RN C ++ T+ P+ +E + GF+ FGC++ + G+ CA+L++ ++A + D E KC YY+SCCFGE+ + +++ + L+ CPGAR A + C+
Sbjct: 187 TPVDRRVDQLDLEGACVGSWGGFYDRIVSVTFNARTLESQALRISSFCASPCGPLFDRQVREFRNACQEGLMRMEEQEDEEEEEEEEEMEAGEGEEGTWIPVPS-------EELLIYRMTGFIGTFGCAQDTVSGRLCAELIVRSLSASASANVGTPTGVAWTKIGNGKHRKADREREAAATAQALAKKEKCAYYTSCCFGEMMKTLRLGEQAELVEGLERVCPGAREAANASCS 414
BLAST of EWM25587.1 vs. NCBI_GenBank
Match: gi|553188284|ref|XP_005854768.1| (hypothetical protein NGA_0115702 [Nannochloropsis gaditana CCMP526] >gi|553191623|ref|XP_005855416.1| hypothetical protein NGA_0115701 [Nannochloropsis gaditana CCMP526] >gi|422293647|gb|EKU20947.1| hypothetical protein NGA_0115701 [Nannochloropsis gaditana CCMP526] >gi|422294295|gb|EKU21595.1| hypothetical protein NGA_0115702 [Nannochloropsis gaditana CCMP526]) HSP 1 Score: 88.5817 bits (218), Expect = 4.868e-17 Identity = 59/235 (25.11%), Postives = 96/235 (40.85%), Query Frame = 0
Query: 41 TELDASLDALAEDAKCGAVWTTFSDTISTAEFNLMPLAGQVKALEAFCATPCGPSFDKAVTEWRNWCD-------------------------SKKATFTPMDDVDEDEDEDEDMPVTFDGFVAEFGCSK-SAGGQFCAQLVMAEIAA----------------------KPDDLET-------------KCDYYSSCCFGELNRIVKVTDLESRASALDAKCPGARAALESKCA 214
T +D +D L + C W F D I + FN L Q + +FC++PCGP FD+ V E+RN C ++ T+ P+ +E + GF+ FGC++ + G+ CA+L++ ++A + D E KC YY+SCCFGE+ + +++ + L+ CPGAR A + C+
Sbjct: 176 TPVDRRVDQLDLEGACVGSWGGFYDRIVSVTFNARTLESQALRISSFCSSPCGPLFDRQVREFRNACQEGLMRMEEQEDEEEEEEEEEMEAGEGEEGTWIPVPS-------EELLIYRMTGFIGTFGCAQDTVSGRLCAELIVRSLSASASANVGTPTGVAWTKIGNGKHRKADREREAAATAQALAKKEKCAYYTSCCFGEMMKTLRLGEQAELVEGLERVCPGAREAANASCS 403 The following BLAST results are available for this feature:
BLAST of EWM25587.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 5
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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