EWM25587.1, cds5088 (CDS) Nannochloropsis gaditana

Overview
NameEWM25587.1
Unique Namecds5088
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002465.1:118629..118874 +
Alignment locationCM002465.1:119058..119462 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM25587.1
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100377g3.7560.mrna
GbkeyCDS
Noteencoded by transcript variant 1; alternatively spliced
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002465.1supercontigCM002465.1:118629..118874 +
CM002465.1supercontigCM002465.1:119058..119462 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
BLAST of EWM25587.1 vs. NCBI_GenBank
Match: gi|585107376|gb|EWM25587.1| (hypothetical protein Naga_100377g3 [Nannochloropsis gaditana] >gi|585107377|gb|EWM25588.1| hypothetical protein Naga_100377g3 [Nannochloropsis gaditana])

HSP 1 Score: 443.736 bits (1140), Expect = 1.097e-157
Identity = 216/216 (100.00%), Postives = 216/216 (100.00%), Query Frame = 0
Query:    1 MWNGTRGTVGISRILRRTTFSMKSILFPRLYPIPSAHPPQTELDASLDALAEDAKCGAVWTTFSDTISTAEFNLMPLAGQVKALEAFCATPCGPSFDKAVTEWRNWCDSKKATFTPMDDVDEDEDEDEDMPVTFDGFVAEFGCSKSAGGQFCAQLVMAEIAAKPDDLETKCDYYSSCCFGELNRIVKVTDLESRASALDAKCPGARAALESKCATA 216
            MWNGTRGTVGISRILRRTTFSMKSILFPRLYPIPSAHPPQTELDASLDALAEDAKCGAVWTTFSDTISTAEFNLMPLAGQVKALEAFCATPCGPSFDKAVTEWRNWCDSKKATFTPMDDVDEDEDEDEDMPVTFDGFVAEFGCSKSAGGQFCAQLVMAEIAAKPDDLETKCDYYSSCCFGELNRIVKVTDLESRASALDAKCPGARAALESKCATA
Sbjct:    1 MWNGTRGTVGISRILRRTTFSMKSILFPRLYPIPSAHPPQTELDASLDALAEDAKCGAVWTTFSDTISTAEFNLMPLAGQVKALEAFCATPCGPSFDKAVTEWRNWCDSKKATFTPMDDVDEDEDEDEDMPVTFDGFVAEFGCSKSAGGQFCAQLVMAEIAAKPDDLETKCDYYSSCCFGELNRIVKVTDLESRASALDAKCPGARAALESKCATA 216          
BLAST of EWM25587.1 vs. NCBI_GenBank
Match: gi|585107375|gb|EWM25586.1| (hypothetical protein Naga_100377g5 [Nannochloropsis gaditana])

HSP 1 Score: 191.43 bits (485), Expect = 2.042e-56
Identity = 94/188 (50.00%), Postives = 126/188 (67.02%), Query Frame = 0
Query:   29 RLYPIPSAHPPQTELDASLDALAEDAKCGAVWTTFSDTISTAEFNLMPLAGQVKALEAFCATPCGPSFDKAVTEWRNWCDSKKATFTPMDDVDEDEDEDEDMPVTFDGFVAEFGCSKSAG--GQFCAQLVMAEIAAKPDDLETKCDYYSSCCFGELNRIVKVTDLESRASALDAKCPGARAALESKCA 214
            R  P+ SA    T LD SL AL    +C A  TTFS T+    F+ +PL  QV AL+ FC TPCGP F+KA+T+WR WCD  +A+F P+               +FDGFV+ FGC+KSAG  G++CA+LVM ++ AKP+D  T+C YY+SCCFGE++R+V +TDL++ A+ L+AKCPG  AAL +KCA
Sbjct:  164 RPVPLVSALCNMTMLDQSLIALTTVPQCQAPMTTFSTTLEGENFSGLPLPDQVTALDTFCQTPCGPLFNKAITDWRTWCDLNRASFVPLSGGMGGM-------YSFDGFVSNFGCTKSAGPNGEYCAKLVMEQLMAKPEDTATRCAYYTSCCFGEMHRLVTLTDLKAHAAMLEAKCPGTTAALTTKCA 344          
BLAST of EWM25587.1 vs. NCBI_GenBank
Match: gi|553179492|ref|XP_005852709.1| (hypothetical protein NGA_0697600 [Nannochloropsis gaditana CCMP526] >gi|422295824|gb|EKU23123.1| hypothetical protein NGA_0697600 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 87.4261 bits (215), Expect = 6.213e-19
Identity = 43/51 (84.31%), Postives = 45/51 (88.24%), Query Frame = 0
Query:   32 PIPSAHPPQTELDASLDALAEDAKCGAVWTTFSDTISTAEFNLMPLAGQVK 82
            P+ +     TELDASLDALAEDAKCGAVWTTFSDTISTAEFNLMPLAGQVK
Sbjct:   37 PMVARSCNATELDASLDALAEDAKCGAVWTTFSDTISTAEFNLMPLAGQVK 87          
BLAST of EWM25587.1 vs. NCBI_GenBank
Match: gi|585108494|gb|EWM26447.1| (hypothetical protein Naga_100144g4 [Nannochloropsis gaditana])

HSP 1 Score: 89.3521 bits (220), Expect = 2.815e-17
Identity = 60/235 (25.53%), Postives = 96/235 (40.85%), Query Frame = 0
Query:   41 TELDASLDALAEDAKCGAVWTTFSDTISTAEFNLMPLAGQVKALEAFCATPCGPSFDKAVTEWRNWCD-------------------------SKKATFTPMDDVDEDEDEDEDMPVTFDGFVAEFGCSK-SAGGQFCAQLVMAEIAA----------------------KPDDLET-------------KCDYYSSCCFGELNRIVKVTDLESRASALDAKCPGARAALESKCA 214
            T +D  +D L  +  C   W  F D I +  FN   L  Q   + +FCA+PCGP FD+ V E+RN C                           ++ T+ P+         +E +     GF+  FGC++ +  G+ CA+L++  ++A                      +  D E              KC YY+SCCFGE+ + +++ +       L+  CPGAR A  + C+
Sbjct:  187 TPVDRRVDQLDLEGACVGSWGGFYDRIVSVTFNARTLESQALRISSFCASPCGPLFDRQVREFRNACQEGLMRMEEQEDEEEEEEEEEMEAGEGEEGTWIPVPS-------EELLIYRMTGFIGTFGCAQDTVSGRLCAELIVRSLSASASANVGTPTGVAWTKIGNGKHRKADREREAAATAQALAKKEKCAYYTSCCFGEMMKTLRLGEQAELVEGLERVCPGAREAANASCS 414          
BLAST of EWM25587.1 vs. NCBI_GenBank
Match: gi|553188284|ref|XP_005854768.1| (hypothetical protein NGA_0115702 [Nannochloropsis gaditana CCMP526] >gi|553191623|ref|XP_005855416.1| hypothetical protein NGA_0115701 [Nannochloropsis gaditana CCMP526] >gi|422293647|gb|EKU20947.1| hypothetical protein NGA_0115701 [Nannochloropsis gaditana CCMP526] >gi|422294295|gb|EKU21595.1| hypothetical protein NGA_0115702 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 88.5817 bits (218), Expect = 4.868e-17
Identity = 59/235 (25.11%), Postives = 96/235 (40.85%), Query Frame = 0
Query:   41 TELDASLDALAEDAKCGAVWTTFSDTISTAEFNLMPLAGQVKALEAFCATPCGPSFDKAVTEWRNWCD-------------------------SKKATFTPMDDVDEDEDEDEDMPVTFDGFVAEFGCSK-SAGGQFCAQLVMAEIAA----------------------KPDDLET-------------KCDYYSSCCFGELNRIVKVTDLESRASALDAKCPGARAALESKCA 214
            T +D  +D L  +  C   W  F D I +  FN   L  Q   + +FC++PCGP FD+ V E+RN C                           ++ T+ P+         +E +     GF+  FGC++ +  G+ CA+L++  ++A                      +  D E              KC YY+SCCFGE+ + +++ +       L+  CPGAR A  + C+
Sbjct:  176 TPVDRRVDQLDLEGACVGSWGGFYDRIVSVTFNARTLESQALRISSFCSSPCGPLFDRQVREFRNACQEGLMRMEEQEDEEEEEEEEEMEAGEGEEGTWIPVPS-------EELLIYRMTGFIGTFGCAQDTVSGRLCAELIVRSLSASASANVGTPTGVAWTKIGNGKHRKADREREAAATAQALAKKEKCAYYTSCCFGEMMKTLRLGEQAELVEGLERVCPGAREAANASCS 403          
The following BLAST results are available for this feature:
BLAST of EWM25587.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 5
Match NameE-valueIdentityDescription
gi|585107376|gb|EWM25587.1|1.097e-157100.00hypothetical protein Naga_100377g3 [Nannochloropsi... [more]
gi|585107375|gb|EWM25586.1|2.042e-5650.00hypothetical protein Naga_100377g5 [Nannochloropsi... [more]
gi|553179492|ref|XP_005852709.1|6.213e-1984.31hypothetical protein NGA_0697600 [Nannochloropsis ... [more]
gi|585108494|gb|EWM26447.1|2.815e-1725.53hypothetical protein Naga_100144g4 [Nannochloropsi... [more]
gi|553188284|ref|XP_005854768.1|4.868e-1725.11hypothetical protein NGA_0115702 [Nannochloropsis ... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna5100rna5100Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications