rna51, rna51 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna51
Unique Name	rna51
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	860
Alignment location	CM002455.1:150607..153449 -

Link to JBrowse

Properties


Property Name	Value
Product	transcriptional repressor
Orig transcript id	gnl\|cribi\|Naga_100671g1.1377.mrna
Orig protein id	gnl\|cribi\|Naga_100671g1.1377
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002455.1	supercontig	CM002455.1:150607..153449 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100671g1	gene49	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna51	rna51-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM30623.1	cds51	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002455.1:150607..153449-
coding sequence from alignment at CM002455.1:150607..153449-

mRNA sequence

>rna51 ID=rna51|Name=rna51|organism=Nannochloropsis gaditana|type=mRNA|length=860bp
ATAGGGCATTCAACTGTTGCTGTACGACACCGTGAGAACAACTAAAACGC
GCACAAACGAGCGGGCGTCGACTTGCATTCCCTTCCTGCGCCTCCGCGAA
GAAGGATGCGTTCTCCCTCCTCCTCCAAGTTACCCTTCTTCGTCTTTCTC
TTCTTCTCCAGCTCTCTTCTTTTTTGGGGTGCTCCCCTTCCCCTATCTGT
TGCGATTGACCATGCAGATTTGACCGCTGGCAATGTGGTCACGCTCACTC
AAGATAATTTTCGGGAGCATGTGGAAGATGGGAATACTTGGCTTGTGGAT
TTTTACGCGCCCTGGTGTGGTCATTGTGTCCGGCTAAATCCCGTCCTCGA
CGAAGTGGCCGCTGCAGTCGGGGACAAACTCCGGATTGGGAAGGTCGACG
CCACGATCCACACACGACTTGCCAAACAATTTGGAATTAGTGGGTATCCT
TCGCTGAAGATTTTTCAACCGCCCTCGAAGGAGGGAGAGGAGGTGGCCGG
CTCGGTCAGTAATTATGATGGTGCTCGCACTCCCGAGGCTCTGACCACCC
TCGCCGTCCGCCTCTCTGCCCCGGCCTTGGCCCATTTACCGACGCCGGAG
GCGCTCGCTGGCTTTCTGCGCTCGTTGCAGAACGCCAGCGTGGGCTTCGT
CTTGGGACGGGTCGGGGAGGGCGGTAGAGCGGGGCGAGGGGAGGACGGGA
CGGAGGAAGGGAGGGAGGGAGAGGAGCAGGTGTTCGAGCAGGTGGCACGG
GCCTTGAAAGTAAAAGCCTCGTTCGGGAGCGTGGGGAAGGAGGCGCTTGA
GAAAGGGAAGGGGCGGGAATTGTTCAGGTACGCAGAACCGTAGAAAAGCC
AGGGGGCAAG

protein sequence of rna51

>rna51-protein ID=rna51-protein|Name=rna51|organism=Nannochloropsis gaditana|type=polypeptide|length=199bp
MRVLSDHDIMFLRSKLATQANSDMVMAKDFEAFWQWWSLVFSALEIIYRE
WLCEAPTPVVIGFSGRKESEAALKEKPSGTFLLRFSTSHLGLLAISFVAP
PPSPSASVPPPSPGSAPVGPPIQHCLVRVTEKGCELFMEPGRKRYDDLQA
LLEDIATLTLFYPDVPKQDVLQALRKPLPIEVEAMRQSNPASADETTVA

mRNA from alignment at CM002455.1:150607..153449-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna51 ID=rna51|Name=rna51|organism=Nannochloropsis gaditana|type=mRNA|length=2843bp|location=Sequence derived from alignment at CM002455.1:150607..153449- (Nannochloropsis gaditana)
GCATGGATCTGTGAGTGTACCTGGTCCTGACATAGCCTCCATGATCATCA
ATGGTCTCCCTCCCTCGGTACTTCCCCACCCCAATCATCTCACGGCCACG
CCCCCCTCCCTTCTCTTTCCCGCTACCATGCCAGGGTCGCGCCTCCCTCC
TCTTCCTCCCCTTCCAGCGCCCACGAGTCCGGCGATTCCCTCCCTACCCT
CCACCCCCTCCTCCATCGGAACGATATCCGGGGGGCGGGGGTGGAGAGCG
GGCGTGGATGGCCGAGTCAGCTGACGTCCAACGGCTCCTCGTCGCGCCGG
CTTCGGCAGGATTCTCTGGGGAGATCGGCTTCCCTTTCTTCGTTCCGCAG
GGGCCCGGGCCTGGAAGGGAGGGAAGGGAAGGACGGTGGCTTGAAGGGAC
GGATGCGGGTGCTTTCCGACCATGATATCATGTTTCTCCGTTCCAAGCTC
GTGAGTAGAGGAGGGGGGAAGGGAGGGAGGAAGGGAAGGAGGGAGGGAGG
GAGGGAGGGAGACGTAGAAGACCTGGGAATGACATGGATGCATGCCCTCC
GTCTTCCCCTAGGCCACTCAAGCGAATTCCGACATGGTTATGGCCAAAGA
CTTCGAGGCCTTCTGGCAGTGGTGGGTCTTGATCGAAGGGAGGGAGGGAG
TGAGGGAGGGAGGGAGGGAGGGAGGGGGAAGACAGGAAACCGCATTTCCC
CTGGGACTGTCCTCCGTCTCTTCATTCTCCACAGCACGGCATCACCCTTC
CTTTCATTCCCCCCCCCTTCTTTTACTATTCCTGTCTGCCCCCCCCGTCG
TCCTCCTTTTTCTCCCTTCCTATTCATCCCACCCTTTTCTCCCTCCCTCC
CTCCCTCCTTCCTTCCCCGCGCGCCCGTCCTCTGCCTTTTCCTCTTGCTC
CAGGTGGTCGCTGGTGTTCAGCGCATTGGAAATCATTTACCGAGAGTGGT
TGTGCGAGGCGCCCACGCCCGTGGTGATTGGATTTTCTGGACGGAAAGAA
TCAGAGGCGGCCTTAAAGGAGAAACCCAGCGGTAGGAGAGAAGGAGGGAG
GGAGGGAGAGAGGGAGGGAAAAAAGACTGACTTTCGCAGGATTAAAGAAA
AAATGAGGAGGAGCGAAAAGAAAAGGGGAAGAGAAATATAAAAATGATCG
GCGATCGCACACACATACCCGCACAGGCACCTTCCTCCTTCGCTTTTCTA
CAAGTCACCTGGGCTTGCTCGCCATCTCCTTCGTTGCCCCCCCACCTTCT
CCTTCTGCCTCGGTCCCACCGCCCTCCCCTGGTTCCGCCCCTGTCGGCCC
TCCAATACAACATTGCCTGGTGCGAGTGACGGAGAAAGGCTGCGAGTTAT
TCATGGAACCGGGGAGAAAGCGATACGACGACTTGCAGGTGATGAAAGAG
AGGGGGAAGAAGAGGAACGAAGAGAGAGGTGGACGTGAGAAGAAAGGGTG
GTCGAAGATCTGCATGGGAAGGAGGGGAAGAGGGCAACGAACGGAAGGGA
ACATGAGAGACTCTTAAAAGGGTGAGAGTGGGTGATACCAGCATTCATTC
TTTTTCAATTGCACTTCCTGACCTTCCCACCCTCTTGTTCCCTTTCTTTA
GGCGTTGCTCGAGGACATTGCCACCCTGACACTCTTTTATCCAGATGTAC
CCAAGCAGGATGTCTTACAGGCTCTTCGAAAGCCATTACCGATTGAAGTG
GAGGCAATGCGGCAATCCAATCCCGCGTCCGCTGACGAGACAACGGTTGC
GTGACCTTAAGAATTTGTATGAATGATAGGCTGGCAAGCGTGGGCATTGA
AGGCGTCTATCGTGCATGAATTTAAAGCCTGGGCATCGAAGGGAGGGGGA
GGTAAGGGCTTGAATGCGACCTGATGAAGTGACCAGGAAGGGTTGAAAAG
CTTGCGGGACAAATTTACTCCTTTGATTGAAGTAACCTCACTTAGCTCTT
GTGAAGCTCATCCCTGCTGTTAAGTTTTGGAATTGATTGGAATGTCGACG
TTATCAAGTCTTTAAGTTGTAGCGGTTGGTTAGCCGTTGGACGGGTAACG
GCTGTTCGGTGTTGTACCCTCACATGGGGAAAAGAGGATGCCCTTCGACG
CAAATCGGAGCGCGAGTGGAGTCCCCCGGCACCATAACTACATATTCATT
TTCAGATCATCATCTCAACGAAATTTTGCATTGCAAGTAATATACCGCGG
GTGTGTTGCTCAAAAACACAATGTCATCGTAAATCACAGTTGTTCTTCGC
TGTAGTTCCTCCAATAAGCTTAAGCAAAACATGTGCTTCTTCGTAAAAAT
CTGTTGAATATTGAAGATACTGGCGAAAATGTAGATAGTGAGCACGTCAG
CAAAGCTGCGGGTCGCAGATTTGACCCACTTAAGTCTAGGCAAATCCGTG
GGCCAAAACTATGATAAGGACGATGGCGAGGGCAAGGAGGATGAAAAGCA
ATAAATACGGGACAAGAAACGCAATCCCTAAGGGTTCGTCCCTATACAGA
TACGTTAAGGGAGAACTACTGCCGATCTGCTCCCGATCCTGGGCATGACG
CTGCCCATTTTCTAATGCATCTGCTCCGTTTTGATCCTGATTATCCCCTC
GGGTAGTCATAAGGGGGAGGACCTGAGAACGTGTGGGACGGCAGGCACAT
CTCTCGTGAGTTTTTCTTAGATCAGCAATTTCTTTCTTGTGCGCTCGACG
CAAGCTTTGCGTAGTTTGCCTTTCCCGAAATAGAGCGGCCTACCCAGAAA
TAAGAAGCGGAGAACAAAGGAGAAAAGATAAGCATGCGAGTATGGCTGCG
ATGATTCCCCATCCCTTGCAAAATACCTCCAAGTCTTGTATCT

Coding sequence (CDS) from alignment at CM002455.1:150607..153449-

>rna51 ID=rna51|Name=rna51|organism=Nannochloropsis gaditana|type=CDS|length=3000bp|location=Sequence derived from alignment at CM002455.1:150607..153449- (Nannochloropsis gaditana)
GCGTTGCTCGAGGACATTGCCACCCTGACACTCTTTTATCCAGATGTACC
CAAGCAGGATGTCTTACAGGCTCTTCGAAAGCCATTACCGATTGAAGTGG
AGGCAATGCGGCAATCCAATCCCGCGTCCGCTGACGAGACAACGGTTGCG
TGAGCACCTTCCTCCTTCGCTTTTCTACAAGTCACCTGGGCTTGCTCGCC
ATCTCCTTCGTTGCCCCCCCACCTTCTCCTTCTGCCTCGGTCCCACCGCC
CTCCCCTGGTTCCGCCCCTGTCGGCCCTCCAATACAACATTGCCTGGTGC
GAGTGACGGAGAAAGGCTGCGAGTTATTCATGGAACCGGGGAGAAAGCGA
TACGACGACTTGCAGGTGGTCGCTGGTGTTCAGCGCATTGGAAATCATTT
ACCGAGAGTGGTTGTGCGAGGCGCCCACGCCCGTGGTGATTGGATTTTCT
GGACGGAAAGAATCAGAGGCGGCCTTAAAGGAGAAACCCAGCGGCCACTC
AAGCGAATTCCGACATGGTTATGGCCAAAGACTTCGAGGCCTTCTGGCAG
TGATGCGGGTGCTTTCCGACCATGATATCATGTTTCTCCGTTCCAAGCTC
GCGTTGCTCGAGGACATTGCCACCCTGACACTCTTTTATCCAGATGTACC
CAAGCAGGATGTCTTACAGGCTCTTCGAAAGCCATTACCGATTGAAGTGG
AGGCAATGCGGCAATCCAATCCCGCGTCCGCTGACGAGACAACGGTTGCG
TGAGCACCTTCCTCCTTCGCTTTTCTACAAGTCACCTGGGCTTGCTCGCC
ATCTCCTTCGTTGCCCCCCCACCTTCTCCTTCTGCCTCGGTCCCACCGCC
CTCCCCTGGTTCCGCCCCTGTCGGCCCTCCAATACAACATTGCCTGGTGC
GAGTGACGGAGAAAGGCTGCGAGTTATTCATGGAACCGGGGAGAAAGCGA
TACGACGACTTGCAGGTGGTCGCTGGTGTTCAGCGCATTGGAAATCATTT
ACCGAGAGTGGTTGTGCGAGGCGCCCACGCCCGTGGTGATTGGATTTTCT
GGACGGAAAGAATCAGAGGCGGCCTTAAAGGAGAAACCCAGCGGCCACTC
AAGCGAATTCCGACATGGTTATGGCCAAAGACTTCGAGGCCTTCTGGCAG
TGATGCGGGTGCTTTCCGACCATGATATCATGTTTCTCCGTTCCAAGCTC
GCGTTGCTCGAGGACATTGCCACCCTGACACTCTTTTATCCAGATGTACC
CAAGCAGGATGTCTTACAGGCTCTTCGAAAGCCATTACCGATTGAAGTGG
AGGCAATGCGGCAATCCAATCCCGCGTCCGCTGACGAGACAACGGTTGCG
TGAGCACCTTCCTCCTTCGCTTTTCTACAAGTCACCTGGGCTTGCTCGCC
ATCTCCTTCGTTGCCCCCCCACCTTCTCCTTCTGCCTCGGTCCCACCGCC
CTCCCCTGGTTCCGCCCCTGTCGGCCCTCCAATACAACATTGCCTGGTGC
GAGTGACGGAGAAAGGCTGCGAGTTATTCATGGAACCGGGGAGAAAGCGA
TACGACGACTTGCAGGTGGTCGCTGGTGTTCAGCGCATTGGAAATCATTT
ACCGAGAGTGGTTGTGCGAGGCGCCCACGCCCGTGGTGATTGGATTTTCT
GGACGGAAAGAATCAGAGGCGGCCTTAAAGGAGAAACCCAGCGGCCACTC
AAGCGAATTCCGACATGGTTATGGCCAAAGACTTCGAGGCCTTCTGGCAG
TGATGCGGGTGCTTTCCGACCATGATATCATGTTTCTCCGTTCCAAGCTC
GCGTTGCTCGAGGACATTGCCACCCTGACACTCTTTTATCCAGATGTACC
CAAGCAGGATGTCTTACAGGCTCTTCGAAAGCCATTACCGATTGAAGTGG
AGGCAATGCGGCAATCCAATCCCGCGTCCGCTGACGAGACAACGGTTGCG
TGAGCACCTTCCTCCTTCGCTTTTCTACAAGTCACCTGGGCTTGCTCGCC
ATCTCCTTCGTTGCCCCCCCACCTTCTCCTTCTGCCTCGGTCCCACCGCC
CTCCCCTGGTTCCGCCCCTGTCGGCCCTCCAATACAACATTGCCTGGTGC
GAGTGACGGAGAAAGGCTGCGAGTTATTCATGGAACCGGGGAGAAAGCGA
TACGACGACTTGCAGGTGGTCGCTGGTGTTCAGCGCATTGGAAATCATTT
ACCGAGAGTGGTTGTGCGAGGCGCCCACGCCCGTGGTGATTGGATTTTCT
GGACGGAAAGAATCAGAGGCGGCCTTAAAGGAGAAACCCAGCGGCCACTC
AAGCGAATTCCGACATGGTTATGGCCAAAGACTTCGAGGCCTTCTGGCAG
TGATGCGGGTGCTTTCCGACCATGATATCATGTTTCTCCGTTCCAAGCTC
GCGTTGCTCGAGGACATTGCCACCCTGACACTCTTTTATCCAGATGTACC
CAAGCAGGATGTCTTACAGGCTCTTCGAAAGCCATTACCGATTGAAGTGG
AGGCAATGCGGCAATCCAATCCCGCGTCCGCTGACGAGACAACGGTTGCG
TGAGCACCTTCCTCCTTCGCTTTTCTACAAGTCACCTGGGCTTGCTCGCC
ATCTCCTTCGTTGCCCCCCCACCTTCTCCTTCTGCCTCGGTCCCACCGCC
CTCCCCTGGTTCCGCCCCTGTCGGCCCTCCAATACAACATTGCCTGGTGC
GAGTGACGGAGAAAGGCTGCGAGTTATTCATGGAACCGGGGAGAAAGCGA
TACGACGACTTGCAGGTGGTCGCTGGTGTTCAGCGCATTGGAAATCATTT
ACCGAGAGTGGTTGTGCGAGGCGCCCACGCCCGTGGTGATTGGATTTTCT
GGACGGAAAGAATCAGAGGCGGCCTTAAAGGAGAAACCCAGCGGCCACTC
AAGCGAATTCCGACATGGTTATGGCCAAAGACTTCGAGGCCTTCTGGCAG
TGATGCGGGTGCTTTCCGACCATGATATCATGTTTCTCCGTTCCAAGCTC

Synonyms

Publications