EWM30623.1, cds51 (CDS) Nannochloropsis gaditana

Overview
NameEWM30623.1
Unique Namecds51
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002455.1:153000..153047 -
Alignment locationCM002455.1:152829..152887 -
Alignment locationCM002455.1:152419..152546 -
Alignment locationCM002455.1:152062..152273 -
Alignment locationCM002455.1:151696..151848 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM30623.1
Producttranscriptional repressor
Orig transcript idgnl|cribi|Naga_100671g1.1377.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002455.1supercontigCM002455.1:153000..153047 -
CM002455.1supercontigCM002455.1:152829..152887 -
CM002455.1supercontigCM002455.1:152419..152546 -
CM002455.1supercontigCM002455.1:152062..152273 -
CM002455.1supercontigCM002455.1:151696..151848 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: INTERPRO
TermDefinition
IPR000980SH2
Homology
BLAST of EWM30623.1 vs. NCBI_GenBank
Match: gi|585113300|gb|EWM30623.1| (transcriptional repressor [Nannochloropsis gaditana])

HSP 1 Score: 406.371 bits (1043), Expect = 2.076e-143
Identity = 199/199 (100.00%), Postives = 199/199 (100.00%), Query Frame = 0
Query:    1 MRVLSDHDIMFLRSKLATQANSDMVMAKDFEAFWQWWSLVFSALEIIYREWLCEAPTPVVIGFSGRKESEAALKEKPSGTFLLRFSTSHLGLLAISFVAPPPSPSASVPPPSPGSAPVGPPIQHCLVRVTEKGCELFMEPGRKRYDDLQALLEDIATLTLFYPDVPKQDVLQALRKPLPIEVEAMRQSNPASADETTVA 199
            MRVLSDHDIMFLRSKLATQANSDMVMAKDFEAFWQWWSLVFSALEIIYREWLCEAPTPVVIGFSGRKESEAALKEKPSGTFLLRFSTSHLGLLAISFVAPPPSPSASVPPPSPGSAPVGPPIQHCLVRVTEKGCELFMEPGRKRYDDLQALLEDIATLTLFYPDVPKQDVLQALRKPLPIEVEAMRQSNPASADETTVA
Sbjct:    1 MRVLSDHDIMFLRSKLATQANSDMVMAKDFEAFWQWWSLVFSALEIIYREWLCEAPTPVVIGFSGRKESEAALKEKPSGTFLLRFSTSHLGLLAISFVAPPPSPSASVPPPSPGSAPVGPPIQHCLVRVTEKGCELFMEPGRKRYDDLQALLEDIATLTLFYPDVPKQDVLQALRKPLPIEVEAMRQSNPASADETTVA 199          
BLAST of EWM30623.1 vs. NCBI_GenBank
Match: gi|585110526|gb|EWM28181.1| (sh2 domain containing protein [Nannochloropsis gaditana])

HSP 1 Score: 123.25 bits (308), Expect = 4.983e-29
Identity = 72/179 (40.22%), Postives = 101/179 (56.42%), Query Frame = 0
Query:    1 MRVLSDHDIMFLRSKLATQA-NSDMVMAKDFEAFWQWWSLVFSALEIIYREWLCEAPTPVVIGFSGRKESEAALKEKPSGTFLLRFSTSHLGLLAISFVAPPPSPSASVPPPSPGSAPVGP-PIQHCLVRVTE-KGCELFMEPGRKRYDDLQALLEDIATLTLFYPDVPKQDVLQALRK 176
            +R L   DI F++ +L  +   SD+V   DF  F + W    +++ ++ REWLC  P  ++ GF  RKE+EA L+    GTFL RFSTSHLGLL++SFV        + P    G        I+H LV+V E + C +FMEPGR R+  L+ L+   A+L  FYP VPK   L  +R+
Sbjct:  715 IRGLEPGDIQFIKDRLVIRTPESDLVRITDFAVFCEGWVPAQNSIALLCREWLCNKPR-LLHGFLSRKETEALLQGYKEGTFLFRFSTSHLGLLSLSFVG---KSRKNYPNDEEGEKKAKALHIRHFLVQVEEDRRCVVFMEPGRSRHASLEDLIMSSASLLEFYPGVPKAHALTQMRR 889          
BLAST of EWM30623.1 vs. NCBI_GenBank
Match: gi|298707847|emb|CBJ30253.1| (SH2 domain containing protein [Ectocarpus siliculosus])

HSP 1 Score: 77.411 bits (189), Expect = 4.103e-13
Identity = 55/151 (36.42%), Postives = 73/151 (48.34%), Query Frame = 0
Query:   23 DMVMAKDFEAFWQWWSLVFSALEIIYREWLCEAPTPVVIGFSGRKESEAALKEKPSGTFLLRFSTSHLGLLAISFVAPPPSPSASVPPPSPGSAPVGPPIQHCLVRVTEKG-CELFMEPGRKR-YDDLQALLEDIATLTLFYPDVPKQDVL 171
            D +  + F  F QWW+ + S L II  +W    P   V GF  R  ++  L ++  GTFLLRFS S +G L ISF  P      SV   SPG   +   ++H LV V   G C +  E G  R Y  L   +  I  L   YPD+PK++  
Sbjct:  755 DFISVEAFAKFSQWWAPLISTLGIIRNDWARTRPV-RVHGFMSRLAAKRLLMQRECGTFLLRFSESKMGALVISFTQP------SV---SPGRRSLS--VKHSLVEVKWGGRCCIQAEKGGMRCYASLHDFVRRIPELKKLYPDIPKEEAF 893          
BLAST of EWM30623.1 vs. NCBI_GenBank
Match: gi|298707841|emb|CBJ30247.1| (SH2 domain containing protein [Ectocarpus siliculosus])

HSP 1 Score: 74.3294 bits (181), Expect = 4.184e-12
Identity = 55/158 (34.81%), Postives = 77/158 (48.73%), Query Frame = 0
Query:   23 DMVMAKDFEAFWQWWSLVFSALEIIYREWLCEAPTPVVIGFSGRKESEAALKEKPSGTFLLRFSTSHLGLLAISFV-----APPPSPS--ASVPPPSPGSAPVGPPIQHCLVRVTEKG-CELFMEPGRKR-YDDLQALLEDIATLTLFYPDVPKQDVL 171
            D++    F  F  WW+ +   L ++  +W    PT  V GF  R  +E  L E+  GTFLLRFS S  G L +SF      A P + S   S P   P S  +   ++HCLV V   G C + +E G K  Y  L  L+   +++ + YPDV K+D  
Sbjct:  786 DVISLDAFVEFSLWWAPLMPTLSLLRNDWASTNPT-RVHGFISRIAAERQLLERERGTFLLRFSESQPGELVVSFTEHVTQAAPRASSMLTSAPRSRPRSQSM--CVKHCLVEVRRGGWCYIEVEQGSKVPYPSLHDLVLACSSMQVLYPDVRKEDAF 940          
BLAST of EWM30623.1 vs. NCBI_GenBank
Match: gi|1025283793|ref|XP_016378049.1| (PREDICTED: LOW QUALITY PROTEIN: signal transducer and activator of transcription 5B-like [Sinocyclocheilus rhinocerous])

HSP 1 Score: 71.2478 bits (173), Expect = 5.253e-11
Identity = 47/159 (29.56%), Postives = 75/159 (47.17%), Query Frame = 0
Query:   19 QANSDMVMAKDFEAFWQWWSLVFSALEIIYREWLCEAPTPVVIGFSGRKESEAALKEKPSGTFLLRFSTSHLGLLAISFVAPPPSPSASVPPPSPGSAPVGPPIQHCLVRVTEKGCELFMEPGRKRYDDLQAL---LEDIATLTLFYPDVPKQDVLQAL 174
            Q N +++  ++F  FWQW+  V    +   R++  E    ++ GF G++     L+ KP+GTFLLRFS S +G + I++V P              S  VG  IQ+             ++P  K+  D   L   + DI  +T  YPD+PK +V +  
Sbjct:  539 QFNKEVLPGRNF-TFWQWFEGVMDLTKKCLRDYWSEK---LIFGFIGKQHLHVILQNKPNGTFLLRFSDSEIGGITIAYVGP--------------SDNVGRKIQN-------------IQPFTKKDLDSAGLGDRIRDINCITHVYPDLPKNEVFKKF 666          
BLAST of EWM30623.1 vs. NCBI_GenBank
Match: gi|1158934481|ref|XP_020315474.1| (signal transducer and activator of transcription 6-like [Oncorhynchus kisutch] >gi|1158934483|ref|XP_020315475.1| signal transducer and activator of transcription 6-like [Oncorhynchus kisutch])

HSP 1 Score: 70.4774 bits (171), Expect = 1.053e-10
Identity = 49/166 (29.52%), Postives = 81/166 (48.80%), Query Frame = 0
Query:   19 QANSDMVMAKDFEAFWQWWSLVFSALEIIYREWLCEAPTPVVIGFSGRKESEAALKEKPSGTFLLRFSTSHLGLLAISFVAPPPSPSASVPPPSPGSAPVGPPIQHCLVRVTEKGCELFMEPGRKRYDDLQAL---LEDIATLTLFYPDVPKQDVLQALR--KPLP 179
            Q N +++  + F  FWQW+  V    +   + +  +    ++ GF G++     LK++P+GTFLLRFS S +G + I++VAP              S   G  IQ+             ++P  KR  ++++L   ++DI  +T  YPD+PK DV +      PLP
Sbjct:  534 QFNKEVLPGRPF-TFWQWFDGVIELTKKHLKSYWSDG---LIFGFIGKQHLHLILKDRPNGTFLLRFSDSEIGGITIAYVAP--------------SENGGQKIQN-------------IQPSTKRDLEIRSLGDRIQDIDFITHVYPDLPKNDVFRKYYTDNPLP 668          
BLAST of EWM30623.1 vs. NCBI_GenBank
Match: gi|1211275149|ref|XP_021421480.1| (signal transducer and activator of transcription 6-like [Oncorhynchus mykiss] >gi|948545558|emb|CDK69042.1| signal transducer and activator of transcription 6 [Oncorhynchus mykiss])

HSP 1 Score: 70.4774 bits (171), Expect = 1.063e-10
Identity = 49/166 (29.52%), Postives = 81/166 (48.80%), Query Frame = 0
Query:   19 QANSDMVMAKDFEAFWQWWSLVFSALEIIYREWLCEAPTPVVIGFSGRKESEAALKEKPSGTFLLRFSTSHLGLLAISFVAPPPSPSASVPPPSPGSAPVGPPIQHCLVRVTEKGCELFMEPGRKRYDDLQAL---LEDIATLTLFYPDVPKQDVLQALR--KPLP 179
            Q N +++  + F  FWQW+  V    +   + +  +    ++ GF G++     LK++P+GTFLLRFS S +G + I++VAP              S   G  IQ+             ++P  KR  ++++L   ++DI  +T  YPD+PK DV +      PLP
Sbjct:  534 QFNKEVLPGRPF-TFWQWFDGVIELTKKHLKSYWSDG---LIFGFIGKQHLHLILKDRPNGTFLLRFSDSEIGGITIAYVAP--------------SENGGQKIQN-------------IQPSTKRDLEIRSLGDRIQDIDFITHVYPDLPKNDVFRKYYTDNPLP 668          
BLAST of EWM30623.1 vs. NCBI_GenBank
Match: gi|929229462|ref|XP_013991240.1| (PREDICTED: signal transducer and activator of transcription 6-like isoform X2 [Salmo salar])

HSP 1 Score: 70.4774 bits (171), Expect = 1.099e-10
Identity = 49/166 (29.52%), Postives = 81/166 (48.80%), Query Frame = 0
Query:   19 QANSDMVMAKDFEAFWQWWSLVFSALEIIYREWLCEAPTPVVIGFSGRKESEAALKEKPSGTFLLRFSTSHLGLLAISFVAPPPSPSASVPPPSPGSAPVGPPIQHCLVRVTEKGCELFMEPGRKRYDDLQAL---LEDIATLTLFYPDVPKQDVLQALR--KPLP 179
            Q N +++  + F  FWQW+  V    +   + +  +    ++ GF G++     LK++P+GTFLLRFS S +G + I++VAP              S   G  IQ+             ++P  KR  ++++L   ++DI  +T  YPD+PK DV +      PLP
Sbjct:  534 QFNKEVLPGRPF-TFWQWFDGVIELTKKHLKSYWSDG---LIFGFIGKQHLHLILKDRPNGTFLLRFSDSEIGGITIAYVAP--------------SENGGQKIQN-------------IQPSTKRDLEIRSLGDRIQDIDFITHVYPDLPKNDVFRKYYTDNPLP 668          
BLAST of EWM30623.1 vs. NCBI_GenBank
Match: gi|929229458|ref|XP_013991238.1| (PREDICTED: signal transducer and activator of transcription 6-like isoform X1 [Salmo salar] >gi|929229460|ref|XP_013991239.1| PREDICTED: signal transducer and activator of transcription 6-like isoform X1 [Salmo salar])

HSP 1 Score: 70.0922 bits (170), Expect = 1.136e-10
Identity = 49/166 (29.52%), Postives = 81/166 (48.80%), Query Frame = 0
Query:   19 QANSDMVMAKDFEAFWQWWSLVFSALEIIYREWLCEAPTPVVIGFSGRKESEAALKEKPSGTFLLRFSTSHLGLLAISFVAPPPSPSASVPPPSPGSAPVGPPIQHCLVRVTEKGCELFMEPGRKRYDDLQAL---LEDIATLTLFYPDVPKQDVLQALR--KPLP 179
            Q N +++  + F  FWQW+  V    +   + +  +    ++ GF G++     LK++P+GTFLLRFS S +G + I++VAP              S   G  IQ+             ++P  KR  ++++L   ++DI  +T  YPD+PK DV +      PLP
Sbjct:  534 QFNKEVLPGRPF-TFWQWFDGVIELTKKHLKSYWSDG---LIFGFIGKQHLHLILKDRPNGTFLLRFSDSEIGGITIAYVAP--------------SENGGQKIQN-------------IQPSTKRDLEIRSLGDRIQDIDFITHVYPDLPKNDVFRKYYTDNPLP 668          
BLAST of EWM30623.1 vs. NCBI_GenBank
Match: gi|642118734|emb|CDQ66037.1| (unnamed protein product [Oncorhynchus mykiss])

HSP 1 Score: 69.3218 bits (168), Expect = 2.214e-10
Identity = 46/157 (29.30%), Postives = 78/157 (49.68%), Query Frame = 0
Query:   19 QANSDMVMAKDFEAFWQWWSLVFSALEIIYREWLCEAPTPVVIGFSGRKESEAALKEKPSGTFLLRFSTSHLGLLAISFVAPPPSPSASVPPPSPGSAPVGPPIQHCLVRVTEKGCELFMEPGRKRYDDLQAL---LEDIATLTLFYPDVPKQDVLQ 172
            Q N +++  + F  FWQW+  V    +   + +  +    ++ GF G++     LK++P+GTFLLRFS S +G + I++VAP              S   G  IQ+             ++P  KR  ++++L   ++DI  +T  YPD+PK DV +
Sbjct:  534 QFNKEVLPGRPF-TFWQWFDGVIELTKKHLKSYWSDG---LIFGFIGKQHLHLILKDRPNGTFLLRFSDSEIGGITIAYVAP--------------SENGGQKIQN-------------IQPSTKRDLEIRSLGDRIQDIDFITHVYPDLPKNDVFR 659          
The following BLAST results are available for this feature:
BLAST of EWM30623.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585113300|gb|EWM30623.1|2.076e-143100.00transcriptional repressor [Nannochloropsis gaditan... [more]
gi|585110526|gb|EWM28181.1|4.983e-2940.22sh2 domain containing protein [Nannochloropsis gad... [more]
gi|298707847|emb|CBJ30253.1|4.103e-1336.42SH2 domain containing protein [Ectocarpus siliculo... [more]
gi|298707841|emb|CBJ30247.1|4.184e-1234.81SH2 domain containing protein [Ectocarpus siliculo... [more]
gi|1025283793|ref|XP_016378049.1|5.253e-1129.56PREDICTED: LOW QUALITY PROTEIN: signal transducer ... [more]
gi|1158934481|ref|XP_020315474.1|1.053e-1029.52signal transducer and activator of transcription 6... [more]
gi|1211275149|ref|XP_021421480.1|1.063e-1029.52signal transducer and activator of transcription 6... [more]
gi|929229462|ref|XP_013991240.1|1.099e-1029.52PREDICTED: signal transducer and activator of tran... [more]
gi|929229458|ref|XP_013991238.1|1.136e-1029.52PREDICTED: signal transducer and activator of tran... [more]
gi|642118734|emb|CDQ66037.1|2.214e-1029.30unnamed protein product [Oncorhynchus mykiss][more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna51rna51Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications