EWM30623.1, cds51 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM30623.1 vs. NCBI_GenBank
Match: gi|585113300|gb|EWM30623.1| (transcriptional repressor [Nannochloropsis gaditana]) HSP 1 Score: 406.371 bits (1043), Expect = 2.076e-143 Identity = 199/199 (100.00%), Postives = 199/199 (100.00%), Query Frame = 0
Query: 1 MRVLSDHDIMFLRSKLATQANSDMVMAKDFEAFWQWWSLVFSALEIIYREWLCEAPTPVVIGFSGRKESEAALKEKPSGTFLLRFSTSHLGLLAISFVAPPPSPSASVPPPSPGSAPVGPPIQHCLVRVTEKGCELFMEPGRKRYDDLQALLEDIATLTLFYPDVPKQDVLQALRKPLPIEVEAMRQSNPASADETTVA 199
MRVLSDHDIMFLRSKLATQANSDMVMAKDFEAFWQWWSLVFSALEIIYREWLCEAPTPVVIGFSGRKESEAALKEKPSGTFLLRFSTSHLGLLAISFVAPPPSPSASVPPPSPGSAPVGPPIQHCLVRVTEKGCELFMEPGRKRYDDLQALLEDIATLTLFYPDVPKQDVLQALRKPLPIEVEAMRQSNPASADETTVA
Sbjct: 1 MRVLSDHDIMFLRSKLATQANSDMVMAKDFEAFWQWWSLVFSALEIIYREWLCEAPTPVVIGFSGRKESEAALKEKPSGTFLLRFSTSHLGLLAISFVAPPPSPSASVPPPSPGSAPVGPPIQHCLVRVTEKGCELFMEPGRKRYDDLQALLEDIATLTLFYPDVPKQDVLQALRKPLPIEVEAMRQSNPASADETTVA 199
BLAST of EWM30623.1 vs. NCBI_GenBank
Match: gi|585110526|gb|EWM28181.1| (sh2 domain containing protein [Nannochloropsis gaditana]) HSP 1 Score: 123.25 bits (308), Expect = 4.983e-29 Identity = 72/179 (40.22%), Postives = 101/179 (56.42%), Query Frame = 0
Query: 1 MRVLSDHDIMFLRSKLATQA-NSDMVMAKDFEAFWQWWSLVFSALEIIYREWLCEAPTPVVIGFSGRKESEAALKEKPSGTFLLRFSTSHLGLLAISFVAPPPSPSASVPPPSPGSAPVGP-PIQHCLVRVTE-KGCELFMEPGRKRYDDLQALLEDIATLTLFYPDVPKQDVLQALRK 176
+R L DI F++ +L + SD+V DF F + W +++ ++ REWLC P ++ GF RKE+EA L+ GTFL RFSTSHLGLL++SFV + P G I+H LV+V E + C +FMEPGR R+ L+ L+ A+L FYP VPK L +R+
Sbjct: 715 IRGLEPGDIQFIKDRLVIRTPESDLVRITDFAVFCEGWVPAQNSIALLCREWLCNKPR-LLHGFLSRKETEALLQGYKEGTFLFRFSTSHLGLLSLSFVG---KSRKNYPNDEEGEKKAKALHIRHFLVQVEEDRRCVVFMEPGRSRHASLEDLIMSSASLLEFYPGVPKAHALTQMRR 889
BLAST of EWM30623.1 vs. NCBI_GenBank
Match: gi|298707847|emb|CBJ30253.1| (SH2 domain containing protein [Ectocarpus siliculosus]) HSP 1 Score: 77.411 bits (189), Expect = 4.103e-13 Identity = 55/151 (36.42%), Postives = 73/151 (48.34%), Query Frame = 0
Query: 23 DMVMAKDFEAFWQWWSLVFSALEIIYREWLCEAPTPVVIGFSGRKESEAALKEKPSGTFLLRFSTSHLGLLAISFVAPPPSPSASVPPPSPGSAPVGPPIQHCLVRVTEKG-CELFMEPGRKR-YDDLQALLEDIATLTLFYPDVPKQDVL 171
D + + F F QWW+ + S L II +W P V GF R ++ L ++ GTFLLRFS S +G L ISF P SV SPG + ++H LV V G C + E G R Y L + I L YPD+PK++
Sbjct: 755 DFISVEAFAKFSQWWAPLISTLGIIRNDWARTRPV-RVHGFMSRLAAKRLLMQRECGTFLLRFSESKMGALVISFTQP------SV---SPGRRSLS--VKHSLVEVKWGGRCCIQAEKGGMRCYASLHDFVRRIPELKKLYPDIPKEEAF 893
BLAST of EWM30623.1 vs. NCBI_GenBank
Match: gi|298707841|emb|CBJ30247.1| (SH2 domain containing protein [Ectocarpus siliculosus]) HSP 1 Score: 74.3294 bits (181), Expect = 4.184e-12 Identity = 55/158 (34.81%), Postives = 77/158 (48.73%), Query Frame = 0
Query: 23 DMVMAKDFEAFWQWWSLVFSALEIIYREWLCEAPTPVVIGFSGRKESEAALKEKPSGTFLLRFSTSHLGLLAISFV-----APPPSPS--ASVPPPSPGSAPVGPPIQHCLVRVTEKG-CELFMEPGRKR-YDDLQALLEDIATLTLFYPDVPKQDVL 171
D++ F F WW+ + L ++ +W PT V GF R +E L E+ GTFLLRFS S G L +SF A P + S S P P S + ++HCLV V G C + +E G K Y L L+ +++ + YPDV K+D
Sbjct: 786 DVISLDAFVEFSLWWAPLMPTLSLLRNDWASTNPT-RVHGFISRIAAERQLLERERGTFLLRFSESQPGELVVSFTEHVTQAAPRASSMLTSAPRSRPRSQSM--CVKHCLVEVRRGGWCYIEVEQGSKVPYPSLHDLVLACSSMQVLYPDVRKEDAF 940
BLAST of EWM30623.1 vs. NCBI_GenBank
Match: gi|1025283793|ref|XP_016378049.1| (PREDICTED: LOW QUALITY PROTEIN: signal transducer and activator of transcription 5B-like [Sinocyclocheilus rhinocerous]) HSP 1 Score: 71.2478 bits (173), Expect = 5.253e-11 Identity = 47/159 (29.56%), Postives = 75/159 (47.17%), Query Frame = 0
Query: 19 QANSDMVMAKDFEAFWQWWSLVFSALEIIYREWLCEAPTPVVIGFSGRKESEAALKEKPSGTFLLRFSTSHLGLLAISFVAPPPSPSASVPPPSPGSAPVGPPIQHCLVRVTEKGCELFMEPGRKRYDDLQAL---LEDIATLTLFYPDVPKQDVLQAL 174
Q N +++ ++F FWQW+ V + R++ E ++ GF G++ L+ KP+GTFLLRFS S +G + I++V P S VG IQ+ ++P K+ D L + DI +T YPD+PK +V +
Sbjct: 539 QFNKEVLPGRNF-TFWQWFEGVMDLTKKCLRDYWSEK---LIFGFIGKQHLHVILQNKPNGTFLLRFSDSEIGGITIAYVGP--------------SDNVGRKIQN-------------IQPFTKKDLDSAGLGDRIRDINCITHVYPDLPKNEVFKKF 666
BLAST of EWM30623.1 vs. NCBI_GenBank
Match: gi|1158934481|ref|XP_020315474.1| (signal transducer and activator of transcription 6-like [Oncorhynchus kisutch] >gi|1158934483|ref|XP_020315475.1| signal transducer and activator of transcription 6-like [Oncorhynchus kisutch]) HSP 1 Score: 70.4774 bits (171), Expect = 1.053e-10 Identity = 49/166 (29.52%), Postives = 81/166 (48.80%), Query Frame = 0
Query: 19 QANSDMVMAKDFEAFWQWWSLVFSALEIIYREWLCEAPTPVVIGFSGRKESEAALKEKPSGTFLLRFSTSHLGLLAISFVAPPPSPSASVPPPSPGSAPVGPPIQHCLVRVTEKGCELFMEPGRKRYDDLQAL---LEDIATLTLFYPDVPKQDVLQALR--KPLP 179
Q N +++ + F FWQW+ V + + + + ++ GF G++ LK++P+GTFLLRFS S +G + I++VAP S G IQ+ ++P KR ++++L ++DI +T YPD+PK DV + PLP
Sbjct: 534 QFNKEVLPGRPF-TFWQWFDGVIELTKKHLKSYWSDG---LIFGFIGKQHLHLILKDRPNGTFLLRFSDSEIGGITIAYVAP--------------SENGGQKIQN-------------IQPSTKRDLEIRSLGDRIQDIDFITHVYPDLPKNDVFRKYYTDNPLP 668
BLAST of EWM30623.1 vs. NCBI_GenBank
Match: gi|1211275149|ref|XP_021421480.1| (signal transducer and activator of transcription 6-like [Oncorhynchus mykiss] >gi|948545558|emb|CDK69042.1| signal transducer and activator of transcription 6 [Oncorhynchus mykiss]) HSP 1 Score: 70.4774 bits (171), Expect = 1.063e-10 Identity = 49/166 (29.52%), Postives = 81/166 (48.80%), Query Frame = 0
Query: 19 QANSDMVMAKDFEAFWQWWSLVFSALEIIYREWLCEAPTPVVIGFSGRKESEAALKEKPSGTFLLRFSTSHLGLLAISFVAPPPSPSASVPPPSPGSAPVGPPIQHCLVRVTEKGCELFMEPGRKRYDDLQAL---LEDIATLTLFYPDVPKQDVLQALR--KPLP 179
Q N +++ + F FWQW+ V + + + + ++ GF G++ LK++P+GTFLLRFS S +G + I++VAP S G IQ+ ++P KR ++++L ++DI +T YPD+PK DV + PLP
Sbjct: 534 QFNKEVLPGRPF-TFWQWFDGVIELTKKHLKSYWSDG---LIFGFIGKQHLHLILKDRPNGTFLLRFSDSEIGGITIAYVAP--------------SENGGQKIQN-------------IQPSTKRDLEIRSLGDRIQDIDFITHVYPDLPKNDVFRKYYTDNPLP 668
BLAST of EWM30623.1 vs. NCBI_GenBank
Match: gi|929229462|ref|XP_013991240.1| (PREDICTED: signal transducer and activator of transcription 6-like isoform X2 [Salmo salar]) HSP 1 Score: 70.4774 bits (171), Expect = 1.099e-10 Identity = 49/166 (29.52%), Postives = 81/166 (48.80%), Query Frame = 0
Query: 19 QANSDMVMAKDFEAFWQWWSLVFSALEIIYREWLCEAPTPVVIGFSGRKESEAALKEKPSGTFLLRFSTSHLGLLAISFVAPPPSPSASVPPPSPGSAPVGPPIQHCLVRVTEKGCELFMEPGRKRYDDLQAL---LEDIATLTLFYPDVPKQDVLQALR--KPLP 179
Q N +++ + F FWQW+ V + + + + ++ GF G++ LK++P+GTFLLRFS S +G + I++VAP S G IQ+ ++P KR ++++L ++DI +T YPD+PK DV + PLP
Sbjct: 534 QFNKEVLPGRPF-TFWQWFDGVIELTKKHLKSYWSDG---LIFGFIGKQHLHLILKDRPNGTFLLRFSDSEIGGITIAYVAP--------------SENGGQKIQN-------------IQPSTKRDLEIRSLGDRIQDIDFITHVYPDLPKNDVFRKYYTDNPLP 668
BLAST of EWM30623.1 vs. NCBI_GenBank
Match: gi|929229458|ref|XP_013991238.1| (PREDICTED: signal transducer and activator of transcription 6-like isoform X1 [Salmo salar] >gi|929229460|ref|XP_013991239.1| PREDICTED: signal transducer and activator of transcription 6-like isoform X1 [Salmo salar]) HSP 1 Score: 70.0922 bits (170), Expect = 1.136e-10 Identity = 49/166 (29.52%), Postives = 81/166 (48.80%), Query Frame = 0
Query: 19 QANSDMVMAKDFEAFWQWWSLVFSALEIIYREWLCEAPTPVVIGFSGRKESEAALKEKPSGTFLLRFSTSHLGLLAISFVAPPPSPSASVPPPSPGSAPVGPPIQHCLVRVTEKGCELFMEPGRKRYDDLQAL---LEDIATLTLFYPDVPKQDVLQALR--KPLP 179
Q N +++ + F FWQW+ V + + + + ++ GF G++ LK++P+GTFLLRFS S +G + I++VAP S G IQ+ ++P KR ++++L ++DI +T YPD+PK DV + PLP
Sbjct: 534 QFNKEVLPGRPF-TFWQWFDGVIELTKKHLKSYWSDG---LIFGFIGKQHLHLILKDRPNGTFLLRFSDSEIGGITIAYVAP--------------SENGGQKIQN-------------IQPSTKRDLEIRSLGDRIQDIDFITHVYPDLPKNDVFRKYYTDNPLP 668
BLAST of EWM30623.1 vs. NCBI_GenBank
Match: gi|642118734|emb|CDQ66037.1| (unnamed protein product [Oncorhynchus mykiss]) HSP 1 Score: 69.3218 bits (168), Expect = 2.214e-10 Identity = 46/157 (29.30%), Postives = 78/157 (49.68%), Query Frame = 0
Query: 19 QANSDMVMAKDFEAFWQWWSLVFSALEIIYREWLCEAPTPVVIGFSGRKESEAALKEKPSGTFLLRFSTSHLGLLAISFVAPPPSPSASVPPPSPGSAPVGPPIQHCLVRVTEKGCELFMEPGRKRYDDLQAL---LEDIATLTLFYPDVPKQDVLQ 172
Q N +++ + F FWQW+ V + + + + ++ GF G++ LK++P+GTFLLRFS S +G + I++VAP S G IQ+ ++P KR ++++L ++DI +T YPD+PK DV +
Sbjct: 534 QFNKEVLPGRPF-TFWQWFDGVIELTKKHLKSYWSDG---LIFGFIGKQHLHLILKDRPNGTFLLRFSDSEIGGITIAYVAP--------------SENGGQKIQN-------------IQPSTKRDLEIRSLGDRIQDIDFITHVYPDLPKNDVFR 659 The following BLAST results are available for this feature:
BLAST of EWM30623.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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