rna5098, rna5098 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna5098
Unique Name	rna5098
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	2493
Alignment location	CM002465.1:116127..118356 -

Link to JBrowse

Properties


Property Name	Value
Product	hypothetical protein
Orig transcript id	gnl\|cribi\|Naga_100377g4.7558.mrna
Orig protein id	gnl\|cribi\|Naga_100377g4.7558
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002465.1	supercontig	CM002465.1:116127..118356 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100377g4	gene4922	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna5098	rna5098-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM25585.1	cds5086	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002465.1:116127..118356-
coding sequence from alignment at CM002465.1:116127..118356-

mRNA sequence

>rna5098 ID=rna5098|Name=rna5098|organism=Nannochloropsis gaditana|type=mRNA|length=2493bp
GAACGGTAACGCGACTGGAAACCCAAGCTCACGTGGAAATATTTCAAGCC
GTTGCCCTCATTTAAAGGAAAATGTAGCACGGCTCCATGATTGAGGATGC
TTATCCTCGGACACTCCGACGGCCCTTCGGTGCGAACGCCCTCACTGTTA
GAGCTGTCTTGCTCAAAATATTGACGCTGCCGTGCATTGTGTCCCTGGAA
TAGTGCTATATATTTTTGCAACGCAAAGATAGATTTGATTTGGAACACGC
ACGTGTTCAAGTGAAAGGACAGGGTGACGAACGGGTAAGCGACTGTTCCA
AATGTGGCACGATTACTGCGATGCGAGCTATTCCCATGTATCTGCACCAT
ACCGGCTGTTATTTTGGGTGATGTACGATTAAAAGAGGGGCGGAATTTTA
CGGATTATGCTCTTGATTGTGTGTGCGAATTCTTCATTTTTGTCCCTCGT
ATCTATACTAGGCCTTCTCATCTTCGTATCATACTTCGCACTCATTCCCA
CTCTGGGAAGCATTCAATAAGCCTTGCGCTAATCCAACGAGTCATGTATC
CACGTGGCATTTGTGTGCACCGATGTTTTATTCCTTTAGTAACTCATACT
TTTTGCCATCCTCATAAATACATAGTACCCCACAGACTTCAACTATGCTG
TACCGGAAAAGCGCCATGGCTCTTTTGAGCCTTGCGATGTTTGCTGCGCG
TGGCACTGCTATAGAGAAGAATATCCTGCGAGGCTTGCAAGCACCTGGAG
TCACCCAAGGGGCTGGAGTGCCGCAGCAAGCCACATTGCAACAAGCGAGC
GGAACCCAGCAGGCTGCCGGTGTCCAAGGTGTGGCACCTGGTGGTGCACC
CGGCGGAATGGGCCAGGCACAGCAACCTGGAGCTTCTCAACAGTACAACG
GGGGCCAACAAGCAAACGGAGGCGTGGCCAACGCAGGGGGAGCAGGCGCG
GGCGGGATGGGCCAAAATGGGATGAATAGACCGGGCATGCAACAACCAGG
CATGCAGCAACCAGGCATGCAGCAACCAGGCATGCAGCAACCAGGCATGC
AGCAACCAGGCATGCAGCAACCGGGCATGCAGCAACCAGGAATGCAGCAA
CCGGGAGCACAAGCTGGTGCGGGGCAGGCGACGCGTCCCGTACCTCTGGT
ATCGGCCTTGTGCAACATGACCATGCTGGATCAAAGCCTGATCGCCTTGA
CTACGGTACCTCAATGTCAAGCCCCCATGACCACCTTCTCCACCACGCTG
GAGGGAGAGAACTTCAGTGGATTGCCGCTTCCGGATCAAGTCACGGCTCT
TGATACATTCTGCCAGACCCCTTGCGGTCCGCTTTTCAACAAAGCCATTA
CCGACTGGCGCACCTGGTGCGACCTGAACCGAGCGTCGTTTGTGCCGCTT
AGCGGGGGTATGGGGGGCATGTACTCTTTCGACGGATTCGTCTCCAACTT
CGGCTGCACCAAGTCGGCGGGTCCCAACGGAGAATATTGCGCGAAACTGG
TCATGGAACAATTGATGGCGAAACCGGAAGACACGGCCACGCGCTGCGCC
TACTACACGAGCTGCTGCTTTGGAGAAATGCATCGGTTGGTGACCCTGAC
AGACCTAAAGGCGCATGCAGCCATGCTGGAAGCAAAATGCCCGGGCACGA
CGGCGGCCTTAACGACAAAGTGTGCCTAAGAAGAAAAGGGACAAAGAGTA
GCGCCTCACGCTGAGGCTGGCTATACTGTACAGAGGTCGACGACGAGAAG
GTGCAGACGAGGACGCATGGGTGTGTTCTTGGCCTCTCTTGCTTGCTCGG
AAGATGGATTGCATGAAATAGGAGGTGTGAAGCTGGAACGTTCTTGGAAT
TTTCTTGAAGGTGTCGAAAAGGTGTCCGGTTGAGGACGCGGAGGGAGCGA
AGAAGGGCACCGAGGTTGTTGGTAGAGGTGGTGCATATACAACGCGAGGG
CAATACACGAGGTGACAGAAAGGAAATGGAGAAGAGGATATCGTACTAAC
GAGAGAATGTAAGATGTGAGAGAAACTGGAAGACGGGCAAGGCAGCATAA
GGAAGGTTCAGGTAGATGTGTGCTTAGAGAACCACAGGAGGCGAAGTGAA
GGACTTTACGGGAAGAGTGGTGCTCTTGGAATTTAAAAGGAGAATGTGCG
GAAGCTTTGAGCGAGGAAGAAAAGTTTATTTGTTTCTTCTCCTTTTTTTT
GGGTTGAGATTTGGACAAGTCGGTAACGATGAAACAAGCAGCACACCGCG
CATGCAGACAACTCACACTCACCCACAGAAAATGATTTTTACCTACTCCT
TTCTCCTCCCCCCCCCCTTGCCGAGAGCTATGTCAGTCGGTAATCAGGAG
TTGTGAAGGGTGCCCAAGGAATCAAAAATAGCAAGGCAGTCTCCAACATA
CGGTCTGGTGATTGAAGATGTTCACATCGTCGAGATTTTCTTCTTCTGTG
CTATGTTTAGTAGTATTCACGTGGAGCTCTACGCCGCACACTA

protein sequence of rna5098

>rna5098-protein ID=rna5098-protein|Name=rna5098|organism=Nannochloropsis gaditana|type=polypeptide|length=105bp
MQSIARLLFFVACVMTLLTTSAAGSAHGHRELRGGFAGNVRRNNRAARAE
MRSDAGGRRLENVEVMTTGVVHPHRVLRGGFAGNVRRNNRAARAAMRSDA
GGRRL

mRNA from alignment at CM002465.1:116127..118356-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna5098 ID=rna5098|Name=rna5098|organism=Nannochloropsis gaditana|type=mRNA|length=2230bp|location=Sequence derived from alignment at CM002465.1:116127..118356- (Nannochloropsis gaditana)
GTAGTCGTTTTTTGTACAACGGCGCACATGTTTGTAAGGAATCTTGCCAA
TAATCCGATTATGGATCCCAAACATGAATTAAAATGAGGATCTGATGTGA
GATCCGGATACGGATACTACATAATAAAAAACTTGTAGCTCGTATGTTAG
ATTGAATTGTTCATCGTGACGAAGGATGCAAAGAGCTGAAGCTTATCCGA
AACAAGAAAACATAAATAATGGGAAGCAAATGAAAATCCTACACAACGAA
CATGCACACAGCTCTGCAGCGCCCCTGACGAGATGTTGAACGTCCTTGCT
CCGAGCGAATCCCCCTTGAATACCCGCTCAGATGTTGAACATCCCTGTTC
CCACTAAATTCCCCGCAAGCACCGGAGGAAGCTGTTCCGCTGCATCACGC
GGTACCAAAACATGTTGCCAGAATCTTTGAAATCTTTTCGAGGAGTAACC
AATTTGATAGTTGAAGAGTAGTTTAGACCGTTTATTGTGTTTTTGGGACA
CATTTCGCACTGATAGTCACATTAAACATGTACATCAAGGTTATCTAGTT
ATGGCTGGAAATATCCAAACTTGACAATTTCCGCAGGGAATCCCCCAATA
TTTTTTGGGCTCGGTATAGCTCGTTAGAAAAGCCTCAATCCGAAATCCCT
ATACGTAACTGGAGTAAATCAGAAACAGCATTTGGTGACATATGAAAACG
GGTTTCCAAGGAGTTTCCAAGGGGCGTTTCGCTTGCAATTGCTCTGGATT
TTGTGCTTTTTCATGTGCTTAGCGTTCTACGTCGGGGTAAACATTGATAA
GACAGCTTCCGTATAGCACCGGCGGCACGAGAAATCGATTTCTCCATGAC
TGTTTCTTCACTTTCACACGGCGGGGATAGCGTATCTGGATCATTTCGTG
TACTTCAATCGGGCGAGAAATGTCATTTTTTGTAAATGACAAGTGCCACG
AGGTCCTACTCGCATACTCCATGCTCTATGAGACCTTATCCTCACGCATG
ATATATTCACAACTACGACGTGTGAAGACAGCCTACCTTTAAAAACAGTA
AAAACAGGTCCAAATCGATTAAACATGCAGAGCATCGCCCGCTTGCTGTT
CTTTGTTGCCTGTGTTATGACATTACTCACGGTGAGTTTCAGAATGCTTG
AAAAGACATGCTGAGATCAATATCATGCGGGAGGAAGATTGATGGACTCA
GCCATAAAAGATCAGCATGACAACTAGTTCTGTCGCAATATCAATCCGTC
TTGCATCTGAGGACTGTGTCAAGAGTGGTCATGGTATAAGCTCTCGAAAA
TTGAATAAACTCCACGCCGGTAGAGAGTATATCTGATATACATCACTGTT
GTGCCTATCTTCATAAATATAGACAAGCGCGGCCGGCTCCGCCCACGGAC
ACCGCGAGCTGCGTGGTGGTTTTGCTGGCAATGTCCGTCGCAACAATCGC
GCCGCCCGGGCGGAGATGCGGAGCGATGCCGGAGGGCGTCGCTTGGAGAA
TGTGGAGGTCATGACGACGGGGGTCGTCCACCCCCATCGAGTCTTGCGTG
GTGGATTTGCCGGAAACGTCCGTCGCAACAATCGCGCCGCCCGGGCTGCG
ATGCGGAGCGATGCCGGAGGACGTCGCCTGTGAGCGTCCTTATGAGTCGG
TGAAGGGGAAAAAAAGACTGCGGGAATCCCAAGGTTCAAACTTTATCCAC
CCCAATGCCACTCAGGATGTGCTTAAGAAGATATATATGATGCATGATTC
TATACTACGGAAAAGCTTTTTTGACCGACAGGTGTCGAGACGACACGTAT
TGCCTTTACAAAAATTATGACGTGCACAAATTTGGACTCGAAACCTATGA
TTGGCTTTTCACTTGTGCAGAGAGGTGCTCTTGAAGAGGCGTGTGTGGAA
TTTGTAGTGTGCGGCGTAGAGCTCCACGTGAATACTACTAAACATAGCAC
AGAAGAAGAAAATCTCGACGATGTGAACATCTTCAATCACCAGACCGTAT
GTTGGAGACTGCCTTGCTATTTTTGATTCCTTGGGCACCCTTCACAACTC
CTGATTACCGACTGACATAGCTCTCGGCAAGGGGGGGGGGAGGAGAAAGG
AGTAGGTAAAAATCATTTTCTGTGGGTGAGTGTGAGTTGTCTGCATGCGC
GGTGTGCTGCTTGTTTCATCGTTACCGACTTGTCCAAATCTCAACCCAAA
AAAAAGGAGAAGAAACAAATAAACTTTTCT

Coding sequence (CDS) from alignment at CM002465.1:116127..118356-

>rna5098 ID=rna5098|Name=rna5098|organism=Nannochloropsis gaditana|type=CDS|length=636bp|location=Sequence derived from alignment at CM002465.1:116127..118356- (Nannochloropsis gaditana)
ACAAGCGCGGCCGGCTCCGCCCACGGACACCGCGAGCTGCGTGGTGGTTT
TGCTGGCAATGTCCGTCGCAACAATCGCGCCGCCCGGGCGGAGATGCGGA
GCGATGCCGGAGGGCGTCGCTTGGAGAATGTGGAGGTCATGACGACGGGG
GTCGTCCACCCCCATCGAGTCTTGCGTGGTGGATTTGCCGGAAACGTCCG
TCGCAACAATCGCGCCGCCCGGGCTGCGATGCGGAGCGATGCCGGAGGAC
GTCGCCTGTGAATGCAGAGCATCGCCCGCTTGCTGTTCTTTGTTGCCTGT
GTTATGACATTACTCACGACAAGCGCGGCCGGCTCCGCCCACGGACACCG
CGAGCTGCGTGGTGGTTTTGCTGGCAATGTCCGTCGCAACAATCGCGCCG
CCCGGGCGGAGATGCGGAGCGATGCCGGAGGGCGTCGCTTGGAGAATGTG
GAGGTCATGACGACGGGGGTCGTCCACCCCCATCGAGTCTTGCGTGGTGG
ATTTGCCGGAAACGTCCGTCGCAACAATCGCGCCGCCCGGGCTGCGATGC
GGAGCGATGCCGGAGGACGTCGCCTGTGAATGCAGAGCATCGCCCGCTTG
CTGTTCTTTGTTGCCTGTGTTATGACATTACTCACG

Synonyms

Publications