rna5097, rna5097 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna5097
Unique Name	rna5097
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	445
Alignment location	CM002465.1:113387..116452 +

Link to JBrowse

Properties


Property Name	Value
Product	hypothetical protein
Orig transcript id	gnl\|cribi\|Naga_100377g5.7559.mrna
Orig protein id	gnl\|cribi\|Naga_100377g5.7559
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002465.1	supercontig	CM002465.1:113387..116452 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100377g5	gene4921	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna5097	rna5097-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM25586.1	cds5085	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002465.1:113387..116452+
coding sequence from alignment at CM002465.1:113387..116452+

mRNA sequence

>rna5097 ID=rna5097|Name=rna5097|organism=Nannochloropsis gaditana|type=mRNA|length=445bp
AGTCTATAAAACAAAATTGGACTCATACAAAGACGATTTCACCTCGATGG
CAGGACGCATGTCATCTTCGACGAGGGCGGCGGCCAATCGTGCCATTTTT
CGTGCATTCAAGTTGCGTGGATTGAGCGTCAAAGCTGATGCTGTGGCTGC
CCTTGTATCTGTCCTCACTCACGAAGAAGATGTAGACGGGGCCCTCGATG
CCATATTAAATGCGATCAAAGGTCTCGTTGAACGGGGGGAGCTCCGCTCG
ACCTTGGTAGACAGAGCGACGATAGAAACAGTCGTGCGGCAGTTGACAAA
AGATGAAGATGACCTGAATCAGGAAGCCATTGCTATCTGGGATGCTTTCA
GCATGCCGAAAATGACGTACGATCACCGGAGCAAGAGTTTCTCCTTCACG
TTCGACAAAGAGCGGCCGTTCAACCCGGATCCAGGGGCACGGTGA

protein sequence of rna5097

>rna5097-protein ID=rna5097-protein|Name=rna5097|organism=Nannochloropsis gaditana|type=polypeptide|length=344bp
MLYRKSAMALLSLAMFAARGTAIEKNILRGLQAPGVTQGAGVPQQATLQQ
ASGTQQAAGVQGVAPGGAPGGMGQAQQPGASQQYNGGQQANGGVANAGGA
GAGGMGQNGMNRPGMQQPGMQQPGMQQPGMQQPGMQQPGMQQPGMQQPGM
QQPGAQAGAGQATRPVPLVSALCNMTMLDQSLIALTTVPQCQAPMTTFST
TLEGENFSGLPLPDQVTALDTFCQTPCGPLFNKAITDWRTWCDLNRASFV
PLSGGMGGMYSFDGFVSNFGCTKSAGPNGEYCAKLVMEQLMAKPEDTATR
CAYYTSCCFGEMHRLVTLTDLKAHAAMLEAKCPGTTAALTTKCA

mRNA from alignment at CM002465.1:113387..116452+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna5097 ID=rna5097|Name=rna5097|organism=Nannochloropsis gaditana|type=mRNA|length=3066bp|location=Sequence derived from alignment at CM002465.1:113387..116452+ (Nannochloropsis gaditana)
GAACGGTAACGCGACTGGAAACCCAAGCTCACGTGGAAATATTTCAAGCC
GTTGCCCTCATTTAAAGGAAAATGTAGCACGGCTCCATGATTGAGGATGC
TTATCCTCGGACACTCCGACGGCCCTTCGGTGCGAACGCCCTCACTGTTA
GAGCTGTCTTGCTCAAAATATTGACGCTGCCGTGCATTGTGTCCCTGGAA
TAGTGCTATATATTTTTGCAACGCAAAGATAGATTTGATTTGGAACACGC
ACGTGTTCAAGTGAAAGGACAGGGTGACGAACGGGTAAGCGACTGTTCCA
AATGTGGCACGATTACTGCGATGCGAGCTATTCCCATGTATCTGCACCAT
ACCGGCTGTTATTTTGGGTGATGTACGATTAAAAGAGGGGCGGAATTTTA
CGGATTATGCTCTTGATTGTGTGTGCGAATTCTTCATTTTTGTCCCTCGT
ATCTATACTAGGCCTTCTCATCTTCGTATCATACTTCGCACTCATTCCCA
CTCTGGGAAGCATTCAATAAGCCTTGCGCTAATCCAACGAGTCATGTATC
CACGTGGCATTTGTGTGCACCGATGTTTTATTCCTTTAGTAACTCATACT
TTTTGCCATCCTCATAAATACATAGTACCCCACAGACTTCAACTATGCTG
TACCGGAAAAGCGCCATGGCTCTTTTGAGCCTTGCGATGTTTGCTGCGCG
TGGCACTGCTATAGAGAAGAATATCCTGCGAGGCTTGCAAGCACCTGGAG
TCACCCAAGGGGCTGGAGTGCCGCAGCAAGCCACATTGCAACAAGCGAGC
GGAACCCAGCAGGCTGCCGGTGTCCAAGGTGTGGCACCTGGTGGTGCACC
CGGCGGAATGGGCCAGGCACAGCAACCTGGAGCTTCTCAACAGTACAACG
GGGGCCAACAAGCAAACGGAGGCGTGGCCAACgcagggggagcaggcgcg
ggcgggaTGGGCCAAAATGGGATGAATAGACCGGGCATGCAACAACCAGG
CATGCAGCAACCAGGCATGCAGCAACCAGGCATGCAGCAACCAGGCATGC
AGCAACCAGGCATGCAGCAACCGGGCATGCAGCAACCAGGAATGCAGCAA
CCGGGAGCACAAGCTGGTGCGGGGCAGGCGACGCGTCCCGTACCTCTGGT
ATCGGCCTTGTGCAACATGGTAAGTGCCTGTACGACGGATGCGTCGCCGC
CAAAGGGTTGCATAGATTTATGTTTGTCCGAAGTCTCTGCAGACAGACAT
GCCGGGCATGGTCAATGTTAATACGGGTCTTTGGCATTCAATGCCTGGTA
GCTTTtcccagggggggggagggcacctTTTGTCCGGAGGAAACTACTTT
GTCTTTTGGTTCATCACACTTatcaccacctccacgtccacagACCATGC
TGGATCAAAGCCTGATCGCCTTGACTACGGTACCTCAATGTCAAGCCCCC
ATgaccaccttctccaccacgctggagggagagaactTCAGTGGATTGCC
GCTTCCGGATCAAGTCACGGTAGGCTAACTGCGAGGAGATACGGAAATAG
GGAATGTGGTCATCATGGTGTTGTCTAGCcaaaagagaaggatgaaAACG
AGGCAAGAGAAGGCATAAGAGGTACCGCCCTTGATGTGTGCACAGGGGGG
GTGGtaaggggagaagagggagaggaaaaaggcggccATCGACCTGCATG
CGCGGGATGGACTTGATAACGGTGGATCGCCGGCCTTTGGAAGACACCGA
ACCTCATCCCGTTCCTTGATTGTCTTTTGTTCGCTCCACCGGTCGAGAAG
ACTAAGaacctttcccgccttccatgTACTGACCCCCATTCCCGCCTGTC
TTCTCTCCTTACACTTAGGCTCTTGATACATTCTGCCAGACCCCTTGCGG
TCCGCTTTTCAACAAAGCCATTACCGACTGGCGCACCTGGTGCGACCTGA
ACCGAGCGTCGTTTGTGCCGCTTAGCGGGGGTATGGGGGGCATGTACTCT
TTCGACGGATTCGTCTCCAACTTCGGCTGCACCAAGTCGGCGGGTCCCAA
CGGAGAATATTGCGCGAAACTGGTCATGGAACAATTGATGGCGAAACCGG
AAGACACGGCCACGCGCTGCGCCTACTACACGAGCTGCTGCTTTGGAGAA
ATGCATCGGTTGGTGACCCTGACAGACCTAAAGGCGCATGCAGCCATGCT
GGAAGCAAAATGCCCGGGCACGACGGCGGCCTTAACGACAAAGTGTGCct
aagaagaaaagggacaaAGAGTAGCGCCTCACGCTGAGGCTGGCTATACT
GTACAGAGGTCGACGACGAGAAGGTGCAGACGAGGACGCATGGGTGTGTT
CTTGGCCTCTCTTGCTTGCTCGGAAGATGGATTGCATGAAATAGGAGGTG
TGAAGCTGGAACGTTCTTGGAATTTTCTTGAAGGTGTCGAAAAGGTGTCC
GGttgaggacgcggagggagcgaagaaGGGCACCGAGGTTGTTGGTAGAG
GTGGTGCATATACAACGCGAGGGCAATACACGAGGTGACagaaaggaaat
ggagaagaggatatCGTACTAACGAGAGAATGTAAGATGTGAGAGAAACT
GGAAGACGGGCAAGGCAGCATAAGGAAGGTTCAGGTAGATGTGTGCTTAG
AGAACCACAGGAGGCGAAGTGAAGGACTTTACGGGAAGAGTGGTGCTCTT
GGAATTTAAAAGGAGAATGTGCGGAAGCTTtgagcgaggaagaaaagtTT
ATTtgtttcttctccttttttttgggtTGAGATTTGGACAAGTCGGTAAC
GATGAAACAAGCAGCACACCGCGCATGCAGACAACTCACACTCACCCACA
GAAAATGATTTTTACCtactcctttctcctccccccccccttgccgaGAG
CTATGTCAGTCGGTAATCAGGAGTTGTGAAGGGTGCCCAAGGAATCAAAA
ATAGCAAGGCAGTCTCCAACATACGGTCTGGTGATTGAAGATGTTCACAT
CGTCGagattttcttcttctgtgcTATGTTTAGTAGTATTCACGTGGAGC
TCTACGCCGCACACTA

Coding sequence (CDS) from alignment at CM002465.1:113387..116452+

>rna5097 ID=rna5097|Name=rna5097|organism=Nannochloropsis gaditana|type=CDS|length=3105bp|location=Sequence derived from alignment at CM002465.1:113387..116452+ (Nannochloropsis gaditana)
ATGCTGTACCGGAAAAGCGCCATGGCTCTTTTGAGCCTTGCGATGTTTGC
TGCGCGTGGCACTGCTATAGAGAAGAATATCCTGCGAGGCTTGCAAGCAC
CTGGAGTCACCCAAGGGGCTGGAGTGCCGCAGCAAGCCACATTGCAACAA
GCGAGCGGAACCCAGCAGGCTGCCGGTGTCCAAGGTGTGGCACCTGGTGG
TGCACCCGGCGGAATGGGCCAGGCACAGCAACCTGGAGCTTCTCAACAGT
ACAACGGGGGCCAACAAGCAAACGGAGGCGTGGCCAACgcagggggagca
ggcgcgggcgggaTGGGCCAAAATGGGATGAATAGACCGGGCATGCAACA
ACCAGGCATGCAGCAACCAGGCATGCAGCAACCAGGCATGCAGCAACCAG
GCATGCAGCAACCAGGCATGCAGCAACCGGGCATGCAGCAACCAGGAATG
CAGCAACCGGGAGCACAAGCTGGTGCGGGGCAGGCGACGCGTCCCGTACC
TCTGGTATCGGCCTTGTGCAACATGACCATGCTGGATCAAAGCCTGATCG
CCTTGACTACGGTACCTCAATGTCAAGCCCCCATgaccaccttctccacc
acgctggagggagagaactTCAGTGGATTGCCGCTTCCGGATCAAGTCAC
GGCTCTTGATACATTCTGCCAGACCCCTTGCGGTCCGCTTTTCAACAAAG
CCATTACCGACTGGCGCACCTGGTGCGACCTGAACCGAGCGTCGTTTGTG
CCGCTTAGCGGGGGTATGGGGGGCATGTACTCTTTCGACGGATTCGTCTC
CAACTTCGGCTGCACCAAGTCGGCGGGTCCCAACGGAGAATATTGCGCGA
AACTGGTCATGGAACAATTGATGGCGAAACCGGAAGACACGGCCACGCGC
TGCGCCTACTACACGAGCTGCTGCTTTGGAGAAATGCATCGGTTGGTGAC
CCTGACAGACCTAAAGGCGCATGCAGCCATGCTGGAAGCAAAATGCCCGG
GCACGACGGCGGCCTTAACGACAAAGTGTGCctaaATGCTGTACCGGAAA
AGCGCCATGGCTCTTTTGAGCCTTGCGATGTTTGCTGCGCGTGGCACTGC
TATAGAGAAGAATATCCTGCGAGGCTTGCAAGCACCTGGAGTCACCCAAG
GGGCTGGAGTGCCGCAGCAAGCCACATTGCAACAAGCGAGCGGAACCCAG
CAGGCTGCCGGTGTCCAAGGTGTGGCACCTGGTGGTGCACCCGGCGGAAT
GGGCCAGGCACAGCAACCTGGAGCTTCTCAACAGTACAACGGGGGCCAAC
AAGCAAACGGAGGCGTGGCCAACgcagggggagcaggcgcgggcgggaTG
GGCCAAAATGGGATGAATAGACCGGGCATGCAACAACCAGGCATGCAGCA
ACCAGGCATGCAGCAACCAGGCATGCAGCAACCAGGCATGCAGCAACCAG
GCATGCAGCAACCGGGCATGCAGCAACCAGGAATGCAGCAACCGGGAGCA
CAAGCTGGTGCGGGGCAGGCGACGCGTCCCGTACCTCTGGTATCGGCCTT
GTGCAACATGACCATGCTGGATCAAAGCCTGATCGCCTTGACTACGGTAC
CTCAATGTCAAGCCCCCATgaccaccttctccaccacgctggagggagag
aactTCAGTGGATTGCCGCTTCCGGATCAAGTCACGGCTCTTGATACATT
CTGCCAGACCCCTTGCGGTCCGCTTTTCAACAAAGCCATTACCGACTGGC
GCACCTGGTGCGACCTGAACCGAGCGTCGTTTGTGCCGCTTAGCGGGGGT
ATGGGGGGCATGTACTCTTTCGACGGATTCGTCTCCAACTTCGGCTGCAC
CAAGTCGGCGGGTCCCAACGGAGAATATTGCGCGAAACTGGTCATGGAAC
AATTGATGGCGAAACCGGAAGACACGGCCACGCGCTGCGCCTACTACACG
AGCTGCTGCTTTGGAGAAATGCATCGGTTGGTGACCCTGACAGACCTAAA
GGCGCATGCAGCCATGCTGGAAGCAAAATGCCCGGGCACGACGGCGGCCT
TAACGACAAAGTGTGCctaaATGCTGTACCGGAAAAGCGCCATGGCTCTT
TTGAGCCTTGCGATGTTTGCTGCGCGTGGCACTGCTATAGAGAAGAATAT
CCTGCGAGGCTTGCAAGCACCTGGAGTCACCCAAGGGGCTGGAGTGCCGC
AGCAAGCCACATTGCAACAAGCGAGCGGAACCCAGCAGGCTGCCGGTGTC
CAAGGTGTGGCACCTGGTGGTGCACCCGGCGGAATGGGCCAGGCACAGCA
ACCTGGAGCTTCTCAACAGTACAACGGGGGCCAACAAGCAAACGGAGGCG
TGGCCAACgcagggggagcaggcgcgggcgggaTGGGCCAAAATGGGATG
AATAGACCGGGCATGCAACAACCAGGCATGCAGCAACCAGGCATGCAGCA
ACCAGGCATGCAGCAACCAGGCATGCAGCAACCAGGCATGCAGCAACCGG
GCATGCAGCAACCAGGAATGCAGCAACCGGGAGCACAAGCTGGTGCGGGG
CAGGCGACGCGTCCCGTACCTCTGGTATCGGCCTTGTGCAACATGACCAT
GCTGGATCAAAGCCTGATCGCCTTGACTACGGTACCTCAATGTCAAGCCC
CCATgaccaccttctccaccacgctggagggagagaactTCAGTGGATTG
CCGCTTCCGGATCAAGTCACGGCTCTTGATACATTCTGCCAGACCCCTTG
CGGTCCGCTTTTCAACAAAGCCATTACCGACTGGCGCACCTGGTGCGACC
TGAACCGAGCGTCGTTTGTGCCGCTTAGCGGGGGTATGGGGGGCATGTAC
TCTTTCGACGGATTCGTCTCCAACTTCGGCTGCACCAAGTCGGCGGGTCC
CAACGGAGAATATTGCGCGAAACTGGTCATGGAACAATTGATGGCGAAAC
CGGAAGACACGGCCACGCGCTGCGCCTACTACACGAGCTGCTGCTTTGGA
GAAATGCATCGGTTGGTGACCCTGACAGACCTAAAGGCGCATGCAGCCAT
GCTGGAAGCAAAATGCCCGGGCACGACGGCGGCCTTAACGACAAAGTGTG
Cctaa

Synonyms

Publications