EWM25586.1, cds5085 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM25586.1 vs. NCBI_GenBank
Match: gi|585107375|gb|EWM25586.1| (hypothetical protein Naga_100377g5 [Nannochloropsis gaditana]) HSP 1 Score: 685.256 bits (1767), Expect = 0.000e+0 Identity = 344/344 (100.00%), Postives = 344/344 (100.00%), Query Frame = 0
Query: 1 MLYRKSAMALLSLAMFAARGTAIEKNILRGLQAPGVTQGAGVPQQATLQQASGTQQAAGVQGVAPGGAPGGMGQAQQPGASQQYNGGQQANGGVANAGGAGAGGMGQNGMNRPGMQQPGMQQPGMQQPGMQQPGMQQPGMQQPGMQQPGMQQPGAQAGAGQATRPVPLVSALCNMTMLDQSLIALTTVPQCQAPMTTFSTTLEGENFSGLPLPDQVTALDTFCQTPCGPLFNKAITDWRTWCDLNRASFVPLSGGMGGMYSFDGFVSNFGCTKSAGPNGEYCAKLVMEQLMAKPEDTATRCAYYTSCCFGEMHRLVTLTDLKAHAAMLEAKCPGTTAALTTKCA 344
MLYRKSAMALLSLAMFAARGTAIEKNILRGLQAPGVTQGAGVPQQATLQQASGTQQAAGVQGVAPGGAPGGMGQAQQPGASQQYNGGQQANGGVANAGGAGAGGMGQNGMNRPGMQQPGMQQPGMQQPGMQQPGMQQPGMQQPGMQQPGMQQPGAQAGAGQATRPVPLVSALCNMTMLDQSLIALTTVPQCQAPMTTFSTTLEGENFSGLPLPDQVTALDTFCQTPCGPLFNKAITDWRTWCDLNRASFVPLSGGMGGMYSFDGFVSNFGCTKSAGPNGEYCAKLVMEQLMAKPEDTATRCAYYTSCCFGEMHRLVTLTDLKAHAAMLEAKCPGTTAALTTKCA
Sbjct: 1 MLYRKSAMALLSLAMFAARGTAIEKNILRGLQAPGVTQGAGVPQQATLQQASGTQQAAGVQGVAPGGAPGGMGQAQQPGASQQYNGGQQANGGVANAGGAGAGGMGQNGMNRPGMQQPGMQQPGMQQPGMQQPGMQQPGMQQPGMQQPGMQQPGAQAGAGQATRPVPLVSALCNMTMLDQSLIALTTVPQCQAPMTTFSTTLEGENFSGLPLPDQVTALDTFCQTPCGPLFNKAITDWRTWCDLNRASFVPLSGGMGGMYSFDGFVSNFGCTKSAGPNGEYCAKLVMEQLMAKPEDTATRCAYYTSCCFGEMHRLVTLTDLKAHAAMLEAKCPGTTAALTTKCA 344
BLAST of EWM25586.1 vs. NCBI_GenBank
Match: gi|585107376|gb|EWM25587.1| (hypothetical protein Naga_100377g3 [Nannochloropsis gaditana] >gi|585107377|gb|EWM25588.1| hypothetical protein Naga_100377g3 [Nannochloropsis gaditana]) HSP 1 Score: 191.43 bits (485), Expect = 3.396e-56 Identity = 94/188 (50.00%), Postives = 126/188 (67.02%), Query Frame = 0
Query: 164 RPVPLVSALCNMTMLDQSLIALTTVPQCQAPMTTFSTTLEGENFSGLPLPDQVTALDTFCQTPCGPLFNKAITDWRTWCDLNRASFVPLSGGMGGM-------YSFDGFVSNFGCTKSAGPNGEYCAKLVMEQLMAKPEDTATRCAYYTSCCFGEMHRLVTLTDLKAHAAMLEAKCPGTTAALTTKCA 344
R P+ SA T LD SL AL +C A TTFS T+ F+ +PL QV AL+ FC TPCGP F+KA+T+WR WCD +A+F P+ +FDGFV+ FGC+KSAG G++CA+LVM ++ AKP+D T+C YY+SCCFGE++R+V +TDL++ A+ L+AKCPG AAL +KCA
Sbjct: 29 RLYPIPSAHPPQTELDASLDALAEDAKCGAVWTTFSDTISTAEFNLMPLAGQVKALEAFCATPCGPSFDKAVTEWRNWCDSKKATFTPMDDVDEDEDEDEDMPVTFDGFVAEFGCSKSAG--GQFCAQLVMAEIAAKPDDLETKCDYYSSCCFGELNRIVKVTDLESRASALDAKCPGARAALESKCA 214
BLAST of EWM25586.1 vs. NCBI_GenBank
Match: gi|553189151|ref|XP_005854943.1| (hypothetical protein NGA_0367000, partial [Nannochloropsis gaditana CCMP526] >gi|422294118|gb|EKU21418.1| hypothetical protein NGA_0367000, partial [Nannochloropsis gaditana CCMP526]) HSP 1 Score: 137.502 bits (345), Expect = 4.055e-37 Identity = 74/75 (98.67%), Postives = 75/75 (100.00%), Query Frame = 0
Query: 8 MALLSLAMFAARGTAIEKNILRGLQAPGVTQGAGVPQQATLQQASGTQQAAGVQGVAPGGAPGGMGQAQQPGASQ 82
MALLSLAMFAARGTA+EKNILRGLQAPGVTQGAGVPQQATLQQASGTQQAAGVQGVAPGGAPGGMGQAQQPGASQ
Sbjct: 1 MALLSLAMFAARGTAVEKNILRGLQAPGVTQGAGVPQQATLQQASGTQQAAGVQGVAPGGAPGGMGQAQQPGASQ 75
BLAST of EWM25586.1 vs. NCBI_GenBank
Match: gi|504268166|ref|WP_014455268.1| (hypothetical protein [Spirochaeta africana] >gi|383106946|gb|AFG37279.1| hypothetical protein Spiaf_1200 [Spirochaeta africana DSM 8902]) HSP 1 Score: 78.9518 bits (193), Expect = 1.232e-13 Identity = 36/46 (78.26%), Postives = 40/46 (86.96%), Query Frame = 0
Query: 109 GMNRPGMQQPGMQQPGMQQPGMQQPGMQQPGMQQPGMQQPGMQQPG 154
GM++PGM QPGM QPGM QPGM QPGM QPGM QPGM+QPGM+QPG
Sbjct: 39 GMDQPGMDQPGMDQPGMDQPGMDQPGMDQPGMDQPGMEQPGMEQPG 84 HSP 2 Score: 75.485 bits (184), Expect = 1.799e-12 Identity = 35/46 (76.09%), Postives = 39/46 (84.78%), Query Frame = 0
Query: 104 GMGQNGMNRPGMQQPGMQQPGMQQPGMQQPGMQQPGMQQPGMQQPG 149
GM Q GM++PGM QPGM QPGM QPGM QPGM QPGM+QPGM+QPG
Sbjct: 39 GMDQPGMDQPGMDQPGMDQPGMDQPGMDQPGMDQPGMEQPGMEQPG 84 HSP 3 Score: 73.1738 bits (178), Expect = 1.286e-11 Identity = 34/45 (75.56%), Postives = 36/45 (80.00%), Query Frame = 0
Query: 112 RPGMQQPGMQQPGMQQPGMQQPGMQQPGMQQPGMQQPGMQQPGAQ 156
PGM QPGM QPGM QPGM QPGM QPGM QPGM QPGM+QPG +
Sbjct: 37 EPGMDQPGMDQPGMDQPGMDQPGMDQPGMDQPGMDQPGMEQPGME 81 HSP 4 Score: 67.781 bits (164), Expect = 1.035e-9 Identity = 32/46 (69.57%), Postives = 36/46 (78.26%), Query Frame = 0
Query: 99 GAGAGGMGQNGMNRPGMQQPGMQQPGMQQPGMQQPGMQQPGMQQPG 144
G GM Q GM++PGM QPGM QPGM QPGM QPGM+QPGM+QPG
Sbjct: 39 GMDQPGMDQPGMDQPGMDQPGMDQPGMDQPGMDQPGMEQPGMEQPG 84 HSP 5 Score: 67.0106 bits (162), Expect = 2.038e-9 Identity = 32/46 (69.57%), Postives = 34/46 (73.91%), Query Frame = 0
Query: 111 NRPGMQQPGMQQPGMQQPGMQQPGMQQPGMQQPGMQQPGMQQPGAQ 156
N P +PGM QPGM QPGM QPGM QPGM QPGM QPGM QPG +
Sbjct: 31 NFPDNAEPGMDQPGMDQPGMDQPGMDQPGMDQPGMDQPGMDQPGME 76
BLAST of EWM25586.1 vs. NCBI_GenBank
Match: gi|929758367|ref|XP_014154165.1| (hypothetical protein SARC_07373 [Sphaeroforma arctica JP610] >gi|906949957|gb|KNC80263.1| hypothetical protein SARC_07373 [Sphaeroforma arctica JP610]) HSP 1 Score: 81.6481 bits (200), Expect = 3.062e-13 Identity = 42/52 (80.77%), Postives = 44/52 (84.62%), Query Frame = 0
Query: 104 GMGQNGMNRPGMQQPGMQQPGMQQPGMQQPGMQQPGMQQPGMQQPGMQQPGA 155
G+ Q GM +PGMQQPGM QPGMQQ MQQPGMQQPGMQQPGMQQPGM Q GA
Sbjct: 180 GIQQAGMEQPGMQQPGMGQPGMQQLSMQQPGMQQPGMQQPGMQQPGMGQSGA 231 HSP 2 Score: 62.7734 bits (151), Expect = 4.732e-7 Identity = 38/61 (62.30%), Postives = 40/61 (65.57%), Query Frame = 0
Query: 105 MGQNGMNRPGMQQPGMQQPGMQQPGMQQPGMQQPGMQQPGMQQPGM----QQPGAQAGAGQ 161
M Q GM +PGMQQPGMQQPGM Q G GM QPGM+ P M QPGM QQ Q GAGQ
Sbjct: 206 MQQPGMQQPGMQQPGMQQPGMGQSGANPTGMSQPGMKPPSMSQPGMPGMGQQTMQQPGAGQ 266
BLAST of EWM25586.1 vs. NCBI_GenBank
Match: gi|1032830142|ref|XP_016830596.1| (PREDICTED: splicing factor, arginine/serine-rich 15 isoform X4 [Cricetulus griseus]) HSP 1 Score: 75.0998 bits (183), Expect = 4.060e-11 Identity = 42/68 (61.76%), Postives = 44/68 (64.71%), Query Frame = 0
Query: 99 GAGAGGMGQNGMNRPGMQQPGMQQPGMQQPGMQQPGMQQPGMQQPGMQQPGMQQPGAQAGAGQATRPV 166
G GM Q GM +PG+ QPGM QPGM QPGM QPGM QPGM QPGM QPGM QPG T PV
Sbjct: 402 GMAQPGMPQPGMTQPGLPQPGMAQPGMPQPGMAQPGMPQPGMAQPGMPQPGMAQPGMPQSGIPPTPPV 469 HSP 2 Score: 70.8626 bits (172), Expect = 9.868e-10 Identity = 41/60 (68.33%), Postives = 42/60 (70.00%), Query Frame = 0
Query: 109 GMNRPGMQQPGMQQPGMQQPGMQQPGMQQPGMQQPGMQQPGMQQPG-AQAGAGQATRPVP 167
GM +PGM QPGM QPGM QPGM QPGM QPGM QPGM QPGM QPG Q G Q P P
Sbjct: 372 GMAQPGMPQPGMPQPGMAQPGMPQPGMPQPGMAQPGMPQPGMTQPGLPQPGMAQPGMPQP 431
BLAST of EWM25586.1 vs. NCBI_GenBank
Match: gi|1032830144|ref|XP_016830598.1| (PREDICTED: splicing factor, arginine/serine-rich 15 isoform X5 [Cricetulus griseus]) HSP 1 Score: 74.7146 bits (182), Expect = 5.607e-11 Identity = 42/68 (61.76%), Postives = 44/68 (64.71%), Query Frame = 0
Query: 99 GAGAGGMGQNGMNRPGMQQPGMQQPGMQQPGMQQPGMQQPGMQQPGMQQPGMQQPGAQAGAGQATRPV 166
G GM Q GM +PG+ QPGM QPGM QPGM QPGM QPGM QPGM QPGM QPG T PV
Sbjct: 402 GMAQPGMPQPGMTQPGLPQPGMAQPGMPQPGMAQPGMPQPGMAQPGMPQPGMAQPGMPQSGIPPTPPV 469 HSP 2 Score: 70.4774 bits (171), Expect = 1.386e-9 Identity = 41/60 (68.33%), Postives = 42/60 (70.00%), Query Frame = 0
Query: 109 GMNRPGMQQPGMQQPGMQQPGMQQPGMQQPGMQQPGMQQPGMQQPG-AQAGAGQATRPVP 167
GM +PGM QPGM QPGM QPGM QPGM QPGM QPGM QPGM QPG Q G Q P P
Sbjct: 372 GMAQPGMPQPGMPQPGMAQPGMPQPGMPQPGMAQPGMPQPGMTQPGLPQPGMAQPGMPQP 431
BLAST of EWM25586.1 vs. NCBI_GenBank
Match: gi|625181827|ref|XP_007640179.1| (PREDICTED: splicing factor, arginine/serine-rich 15 isoform X1 [Cricetulus griseus]) HSP 1 Score: 73.9442 bits (180), Expect = 9.398e-11 Identity = 42/68 (61.76%), Postives = 44/68 (64.71%), Query Frame = 0
Query: 99 GAGAGGMGQNGMNRPGMQQPGMQQPGMQQPGMQQPGMQQPGMQQPGMQQPGMQQPGAQAGAGQATRPV 166
G GM Q GM +PG+ QPGM QPGM QPGM QPGM QPGM QPGM QPGM QPG T PV
Sbjct: 402 GMAQPGMPQPGMTQPGLPQPGMAQPGMPQPGMAQPGMPQPGMAQPGMPQPGMAQPGMPQSGIPPTPPV 469 HSP 2 Score: 70.4774 bits (171), Expect = 1.485e-9 Identity = 41/60 (68.33%), Postives = 42/60 (70.00%), Query Frame = 0
Query: 109 GMNRPGMQQPGMQQPGMQQPGMQQPGMQQPGMQQPGMQQPGMQQPG-AQAGAGQATRPVP 167
GM +PGM QPGM QPGM QPGM QPGM QPGM QPGM QPGM QPG Q G Q P P
Sbjct: 372 GMAQPGMPQPGMPQPGMAQPGMPQPGMPQPGMAQPGMPQPGMTQPGLPQPGMAQPGMPQP 431
BLAST of EWM25586.1 vs. NCBI_GenBank
Match: gi|344245356|gb|EGW01460.1| (Splicing factor, arginine/serine-rich 15 [Cricetulus griseus]) HSP 1 Score: 73.9442 bits (180), Expect = 9.491e-11 Identity = 42/68 (61.76%), Postives = 44/68 (64.71%), Query Frame = 0
Query: 99 GAGAGGMGQNGMNRPGMQQPGMQQPGMQQPGMQQPGMQQPGMQQPGMQQPGMQQPGAQAGAGQATRPV 166
G GM Q GM +PG+ QPGM QPGM QPGM QPGM QPGM QPGM QPGM QPG T PV
Sbjct: 333 GMAQPGMPQPGMTQPGLPQPGMAQPGMPQPGMAQPGMPQPGMAQPGMPQPGMAQPGMPQSGIPPTPPV 400 HSP 2 Score: 70.4774 bits (171), Expect = 1.436e-9 Identity = 41/60 (68.33%), Postives = 42/60 (70.00%), Query Frame = 0
Query: 109 GMNRPGMQQPGMQQPGMQQPGMQQPGMQQPGMQQPGMQQPGMQQPG-AQAGAGQATRPVP 167
GM +PGM QPGM QPGM QPGM QPGM QPGM QPGM QPGM QPG Q G Q P P
Sbjct: 303 GMAQPGMPQPGMPQPGMAQPGMPQPGMPQPGMAQPGMPQPGMTQPGLPQPGMAQPGMPQP 362
BLAST of EWM25586.1 vs. NCBI_GenBank
Match: gi|625181829|ref|XP_007640181.1| (PREDICTED: splicing factor, arginine/serine-rich 15 isoform X2 [Cricetulus griseus]) HSP 1 Score: 73.9442 bits (180), Expect = 9.980e-11 Identity = 42/68 (61.76%), Postives = 44/68 (64.71%), Query Frame = 0
Query: 99 GAGAGGMGQNGMNRPGMQQPGMQQPGMQQPGMQQPGMQQPGMQQPGMQQPGMQQPGAQAGAGQATRPV 166
G GM Q GM +PG+ QPGM QPGM QPGM QPGM QPGM QPGM QPGM QPG T PV
Sbjct: 402 GMAQPGMPQPGMTQPGLPQPGMAQPGMPQPGMAQPGMPQPGMAQPGMPQPGMAQPGMPQSGIPPTPPV 469 HSP 2 Score: 70.0922 bits (170), Expect = 1.620e-9 Identity = 41/60 (68.33%), Postives = 42/60 (70.00%), Query Frame = 0
Query: 109 GMNRPGMQQPGMQQPGMQQPGMQQPGMQQPGMQQPGMQQPGMQQPG-AQAGAGQATRPVP 167
GM +PGM QPGM QPGM QPGM QPGM QPGM QPGM QPGM QPG Q G Q P P
Sbjct: 372 GMAQPGMPQPGMPQPGMAQPGMPQPGMPQPGMAQPGMPQPGMTQPGLPQPGMAQPGMPQP 431 The following BLAST results are available for this feature:
BLAST of EWM25586.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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