rna5095, rna5095 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna5095
Unique Name	rna5095
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1246
Alignment location	CM002465.1:102678..104504 -

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Properties


Property Name	Value
Product	hypothetical protein
Orig transcript id	gnl\|cribi\|Naga_101029g2.3277.mrna
Orig protein id	gnl\|cribi\|Naga_101029g2.3277
Gbkey	mRNA
Note	encoded by transcript variant 1; alternatively spliced

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002465.1	supercontig	CM002465.1:102678..104504 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_101029g2	gene4919	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna5095	rna5095-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM25589.1	cds5083	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002465.1:102678..104504-
coding sequence from alignment at CM002465.1:102678..104504-

mRNA sequence

>rna5095 ID=rna5095|Name=rna5095|organism=Nannochloropsis gaditana|type=mRNA|length=1246bp
CTACTTCCGCCCGCCTCGCGTGTCAAGCGACACGGCAACGTTTTGGTATT
ATTTCATCGAGCATTGAAGTACTCGCACGGGTATCTGGGCGCGACACTTT
CTGCACTTTGTGTGCAAAAGACTGGCAAGTCGACTGTGTTGGACCCTCGG
AACGCGAATAAGGCTCCCCACTCGGACTCGAAGGGTGTTACAACTCACTT
TTCACGGGAACACTGTAAACCCTTGTCCAATTTTCCCCACCCCGTCCAGA
ACACCAGCATCTACACAATAAATAAACTTTAAAACCTCCTCGTGTGGCCT
CGGGTTCTGTGGACAAGGCTTGAAGCACTCCGCAAACCCCTCCGCTGTCA
CAAGCTCTGACAAAAGCTGCGTGAATTGAAGGCGCCATGCCGTCCCTCCT
ACCGTTGTCCTGCCTCATGCTCCTTTCCCTGCTGGGCTCATGTGCCTTCT
TTCTGCCTGCACGTCCCTCTTCCTCCTTAATTTCTCGCTCCCTCTTCATC
ACCTCATCACCCTCCCTCCCCACATCTTCATCTGCCTTACATGCTCGCAA
AAAACGGCCCAAAGAGCAAGATTGGATGGAAGTCCTGGCGGAATCGGGGG
GTATGGAAGAGAAGGAGGAGGGCATTTGGCCGGCCGCCCCGGCCCCCTGG
GAGGCATCCTTCGTCGGGACCTCATTAGATCCGTTGATGCTGGACCCCGA
TGACTTTGATGAAGAGGAGTTGGGGATGATGGCCATGTTGAACCAGGAAG
AGGAGGAGGAGGACCTTCCGGTGCTGGAGGTAGAGCAAGTCCTAGACTTG
TCCTTAGGCAACATGGAGTACCGGGAGGACGAGGTATGTAAATCTATTAC
TGTGTAGGGAGGGAGGGAGGGAAAGGAAAGAAAGAAGGAAGCAAGGAGGC
ATTGCCGGAGATTGTGAGTGGTTCTGCTGTGTTTCTCCTTCCAGCGGGCC
GGCAGAGGGCGCCCTGAGACCCCAATAGAGGTGTACTGTGTTCCAAAATC
CGTTACACTTGCGTGGACGAAACCGTTCGAGGTTTTGGGAAATACCGGTC
GGAGAATCTGGCCCGGGCTATGACCCTTGTTTCCCTTGTGTACTTTTTTG
GGCCCTGGACACTGGCAGGATTGGGAGGGCGAGGAAAACAGCGAAAAATA
CCGACAGGCGCGGAACCGGGCGAAAGCCTCCTCCCTCCATGACACCGTGG
TGGAGCACGCGGGGAGGTTCTACGAGCATTACAACGGGCGGTAGGA

protein sequence of rna5095

>rna5095-protein ID=rna5095-protein|Name=rna5095|organism=Nannochloropsis gaditana|type=polypeptide|length=190bp
MPSLLPLSCLMLLSLLGSCAFFLPARPSSSLISRSLFITSSPSLPTSSSA
LHARKKRPKEQDWMEVLAESGGMEEKEEGIWPAAPAPWEASFVGTSLDPL
MLDPDDFDEEELGMMAMLNQEEEEEDLPVLEVEQVLDLSLGNMEYREDED
WEGEENSEKYRQARNRAKASSLHDTVVEHAGRFYEHYNGR

mRNA from alignment at CM002465.1:102678..104504-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna5095 ID=rna5095|Name=rna5095|organism=Nannochloropsis gaditana|type=mRNA|length=1827bp|location=Sequence derived from alignment at CM002465.1:102678..104504- (Nannochloropsis gaditana)
CCGCCCGCCTCGCGTGTCAAGCGACACGGCAACGTTTTGGTATTATTTCA
TCGAGCATTGAAGTACTCGCACGGGTATCTGGGCGCGACACTTTCTGCAC
TTTGTGTGCAAAAGACTGGCAAGTCGACTGTGTTGGACCCTCGGAACGCG
AATAAGGCTCCCCACTCGGACTCGAAGGGTGTTACAACTCACTTTTCACG
GGAACACTGTAAACCCTTGTCCAATTTTCCCCACCCCGTCCAGAACACCA
GCATCTACACAATAAATAAACTTTAAAACCTCCTCGTGTGGCCTCGGGTT
CTGTGGACAAGGCTTGAAGCACTCCGCAAACCCCTCCGCTGTCACAAGCT
CTGACAAAAGGTGGGCTTGGAGGGATGAGTACCGTGTGTAGAATCGTACC
GCGCTTCCATACCCTCTCTTTCCTCTTGTGGGCTGGCTTTCTTTTGCGAT
CTCGGGCTCGACGCTTATTTACTGCGGCATATTTGGTTTCATGATCTTAT
TTTTGATCCCTCCCGGCGATGGAGGTGGACAGCCTACCTCGTCCTGGTAG
ACGTGCATCTCATTTAATCACCTCTGCCCTCCTTGATTCGTCCTTCTCTT
TCATTCTACTCCAGCTGCGTGAATTGAAGGCGCCATGCCGTCCCTCCTAC
CGTTGTCCTGCCTCATGCTCCTTTCCCTGCTGGGCTCATGTGCCTTCTTT
CTGCCTGCACGTCCCTCTTCCTCCTTAATTTCTCGCTCCCTCTTCATCAC
CTCATCACCCTCCCTCCCCACATCTTCATCTGCCTTACATGCTCGCAAAA
AACGGCCCAAAGAGCAAGATTGGTGCGTCGCCGGGATGCAGGATGTTTCC
CGACGTGTCACACCTTCTCACCTTCGCCCTCCCGCCCTCCTTTCCTCCCT
CCCTCCCTCCCACCCTCCCTCTTTCCCTCCCTCCCTCCCGCTTCACACTC
AGGATGGAAGTCCTGGCGGAATCGGGGGGTATGGAAGAGAAGGAGGAGGG
CATTTGGCCGGCCGCCCCGGCCCCCTGGGAGGCATCCTTCGTCGGGACCT
CATTAGATCCGTTGATGCTGGACCCCGGTAGGGAGGGAGGGAGGGGGGAA
GCGAGGGAGGGGGGGGGGGGAGGAAAAGGAGTGGTTGTCGATTTAGGTTC
CTGACTACTGGGCTCTTTCTTCACGGGGTGGCAGATGACTTTGATGAAGA
GGAGTTGGGGATGATGGCCATGTTGAACCAGGTAAGAAGGAAGGGGGAAG
GAAAGGACGGGGGGGAGGGCGGGGTGGAGGTCCCGCTTTCATTCCCTCAC
CTCGCTCGCATGCTCGGTGATGAACAGGAAGAGGAGGAGGAGGACCTTCC
GGTGCTGGAGGTAGAGCAAGTCCTAGACTTGTCCTTAGGCAACATGGAGT
ACCGGGAGGACGAGGTATGTAAATCTATTACTGTGTAGGGAGGGAGGGAG
GGAAAGGAAAGAAAGAAGGAAGCAAGGAGGCATTGCCGGAGATTGTGAGT
GGTTCTGCTGTGTTTCTCCTTCCAGCGGGCCGGCAGAGGGCGCCCTGAGA
CCCCAATAGAGGTGTACTGTGTTCCAAAATCCGTTACACTTGCGTGGACG
AAACCGTTCGAGGTTTTGGGAAATACCGGTCGGAGAATCTGGCCCGGGCT
ATGACCCTTGTTTCCCTTGTGTACTTTTTTGGGCCCTGGACACTGGCAGG
ATTGGGAGGGCGAGGAAAACAGCGAAAAATACCGACAGGCGCGGAACCGG
GCGAAAGCCTCCTCCCTCCATGACACCGTGGTGGAGCACGCGGGGAGGTT
CTACGAGCATTACAACGGGCGGTAGGA

Coding sequence (CDS) from alignment at CM002465.1:102678..104504-

>rna5095 ID=rna5095|Name=rna5095|organism=Nannochloropsis gaditana|type=CDS|length=2865bp|location=Sequence derived from alignment at CM002465.1:102678..104504- (Nannochloropsis gaditana)
GATTGGGAGGGCGAGGAAAACAGCGAAAAATACCGACAGGCGCGGAACCG
GGCGAAAGCCTCCTCCCTCCATGACACCGTGGTGGAGCACGCGGGGAGGT
TCTACGAGCATTACAACGGGCGGTAGGAAGAGGAGGAGGAGGACCTTCCG
GTGCTGGAGGTAGAGCAAGTCCTAGACTTGTCCTTAGGCAACATGGAGTA
CCGGGAGGACGAGATGACTTTGATGAAGAGGAGTTGGGGATGATGGCCAT
GTTGAACCAGGATGGAAGTCCTGGCGGAATCGGGGGGTATGGAAGAGAAG
GAGGAGGGCATTTGGCCGGCCGCCCCGGCCCCCTGGGAGGCATCCTTCGT
CGGGACCTCATTAGATCCGTTGATGCTGGACCCCGATGCCGTCCCTCCTA
CCGTTGTCCTGCCTCATGCTCCTTTCCCTGCTGGGCTCATGTGCCTTCTT
TCTGCCTGCACGTCCCTCTTCCTCCTTAATTTCTCGCTCCCTCTTCATCA
CCTCATCACCCTCCCTCCCCACATCTTCATCTGCCTTACATGCTCGCAAA
AAACGGCCCAAAGAGCAAGATTGGATTGGGAGGGCGAGGAAAACAGCGAA
AAATACCGACAGGCGCGGAACCGGGCGAAAGCCTCCTCCCTCCATGACAC
CGTGGTGGAGCACGCGGGGAGGTTCTACGAGCATTACAACGGGCGGTAGG
AAGAGGAGGAGGAGGACCTTCCGGTGCTGGAGGTAGAGCAAGTCCTAGAC
TTGTCCTTAGGCAACATGGAGTACCGGGAGGACGAGATGACTTTGATGAA
GAGGAGTTGGGGATGATGGCCATGTTGAACCAGGATGGAAGTCCTGGCGG
AATCGGGGGGTATGGAAGAGAAGGAGGAGGGCATTTGGCCGGCCGCCCCG
GCCCCCTGGGAGGCATCCTTCGTCGGGACCTCATTAGATCCGTTGATGCT
GGACCCCGATGCCGTCCCTCCTACCGTTGTCCTGCCTCATGCTCCTTTCC
CTGCTGGGCTCATGTGCCTTCTTTCTGCCTGCACGTCCCTCTTCCTCCTT
AATTTCTCGCTCCCTCTTCATCACCTCATCACCCTCCCTCCCCACATCTT
CATCTGCCTTACATGCTCGCAAAAAACGGCCCAAAGAGCAAGATTGGATT
GGGAGGGCGAGGAAAACAGCGAAAAATACCGACAGGCGCGGAACCGGGCG
AAAGCCTCCTCCCTCCATGACACCGTGGTGGAGCACGCGGGGAGGTTCTA
CGAGCATTACAACGGGCGGTAGGAAGAGGAGGAGGAGGACCTTCCGGTGC
TGGAGGTAGAGCAAGTCCTAGACTTGTCCTTAGGCAACATGGAGTACCGG
GAGGACGAGATGACTTTGATGAAGAGGAGTTGGGGATGATGGCCATGTTG
AACCAGGATGGAAGTCCTGGCGGAATCGGGGGGTATGGAAGAGAAGGAGG
AGGGCATTTGGCCGGCCGCCCCGGCCCCCTGGGAGGCATCCTTCGTCGGG
ACCTCATTAGATCCGTTGATGCTGGACCCCGATGCCGTCCCTCCTACCGT
TGTCCTGCCTCATGCTCCTTTCCCTGCTGGGCTCATGTGCCTTCTTTCTG
CCTGCACGTCCCTCTTCCTCCTTAATTTCTCGCTCCCTCTTCATCACCTC
ATCACCCTCCCTCCCCACATCTTCATCTGCCTTACATGCTCGCAAAAAAC
GGCCCAAAGAGCAAGATTGGATTGGGAGGGCGAGGAAAACAGCGAAAAAT
ACCGACAGGCGCGGAACCGGGCGAAAGCCTCCTCCCTCCATGACACCGTG
GTGGAGCACGCGGGGAGGTTCTACGAGCATTACAACGGGCGGTAGGAAGA
GGAGGAGGAGGACCTTCCGGTGCTGGAGGTAGAGCAAGTCCTAGACTTGT
CCTTAGGCAACATGGAGTACCGGGAGGACGAGATGACTTTGATGAAGAGG
AGTTGGGGATGATGGCCATGTTGAACCAGGATGGAAGTCCTGGCGGAATC
GGGGGGTATGGAAGAGAAGGAGGAGGGCATTTGGCCGGCCGCCCCGGCCC
CCTGGGAGGCATCCTTCGTCGGGACCTCATTAGATCCGTTGATGCTGGAC
CCCGATGCCGTCCCTCCTACCGTTGTCCTGCCTCATGCTCCTTTCCCTGC
TGGGCTCATGTGCCTTCTTTCTGCCTGCACGTCCCTCTTCCTCCTTAATT
TCTCGCTCCCTCTTCATCACCTCATCACCCTCCCTCCCCACATCTTCATC
TGCCTTACATGCTCGCAAAAAACGGCCCAAAGAGCAAGATTGGATTGGGA
GGGCGAGGAAAACAGCGAAAAATACCGACAGGCGCGGAACCGGGCGAAAG
CCTCCTCCCTCCATGACACCGTGGTGGAGCACGCGGGGAGGTTCTACGAG
CATTACAACGGGCGGTAGGAAGAGGAGGAGGAGGACCTTCCGGTGCTGGA
GGTAGAGCAAGTCCTAGACTTGTCCTTAGGCAACATGGAGTACCGGGAGG
ACGAGATGACTTTGATGAAGAGGAGTTGGGGATGATGGCCATGTTGAACC
AGGATGGAAGTCCTGGCGGAATCGGGGGGTATGGAAGAGAAGGAGGAGGG
CATTTGGCCGGCCGCCCCGGCCCCCTGGGAGGCATCCTTCGTCGGGACCT
CATTAGATCCGTTGATGCTGGACCCCGATGCCGTCCCTCCTACCGTTGTC
CTGCCTCATGCTCCTTTCCCTGCTGGGCTCATGTGCCTTCTTTCTGCCTG
CACGTCCCTCTTCCTCCTTAATTTCTCGCTCCCTCTTCATCACCTCATCA
CCCTCCCTCCCCACATCTTCATCTGCCTTACATGCTCGCAAAAAACGGCC
CAAAGAGCAAGATTG

Synonyms

Publications