rna5093, rna5093 (mRNA) Nannochloropsis gaditana

Overview
Namerna5093
Unique Namerna5093
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length315
Alignment locationCM002465.1:101688..102110 -

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_103055g1.7137.mrna
Orig protein idgnl|cribi|Naga_103055g1.7137
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002465.1supercontigCM002465.1:101688..102110 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_103055g1gene4918Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna5093rna5093-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM25592.1cds5081Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna5093 ID=rna5093|Name=rna5093|organism=Nannochloropsis gaditana|type=mRNA|length=315bp
ATGGCCGACGTCCTCGTTCATCTGGTGGACGCCTCCAACCCCATGTGGCG
AAAGCAGAAGGCTGCCGTGGACAGCACCCTGGAAGACATGGGGATGGGCC
ACAAGCCTCGGATCGTGCTCTTCAACAAAATGGACGCGCTGAGCGAGGAG
GAGCTAGAGGCATGGTCGGACGGCTGGGCGGAGAGGATGCGAGAGACGGA
GGCGGGAACTGGGAGAGGGCGTCCGAGGAGAAGACGAGTAGCAGGGAGGT
GTCCGCGGGGAGAGGAGGGGGGGAGGAGGAAGAGGAGGAGGGGGAGAAGA
AGGGACTGGAAATAG
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protein sequence of rna5093

>rna5093-protein ID=rna5093-protein|Name=rna5093|organism=Nannochloropsis gaditana|type=polypeptide|length=66bp
MCAGIPRGGLGGLYQQRKVDTPEPAHAGGGARRGPTLCHAGPYHTALSRP
YSSRTLWGSSRSFRHN
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mRNA from alignment at CM002465.1:101688..102110-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna5093 ID=rna5093|Name=rna5093|organism=Nannochloropsis gaditana|type=mRNA|length=423bp|location=Sequence derived from alignment at CM002465.1:101688..102110- (Nannochloropsis gaditana)
ATGTGTGCAGGGATACCCCGTGGTGGCCTTGGTGGGCTATACCAACAGCG
GAAAGTCGACACTCCTGAACCGGCTCACGCAGGCGGGGGCGCTCGCCGAG
GACCTACTCTTTGCCACGCTGGACCCTACCACACGGTAGGGCTCCCTGCC
CGCCCTCCTCCCGCGCCTTTTTTTCCCTTGTTTAAGTCCCATGCACGCGG
CCTGGTTTTTCTTCTCGTGACGCACTCGGTTCGGTAACCCCTTCCACCCT
CTTTCCCTCCCTCCTTCCCTCCATTCTTCCCTCCTTCCCTCCCTCCATTC
TTCCCTCCTTTTCTTCCCTCCCTTCTTCCAGCCGCCTCTCCCTCCCGGGC
TTCCAAGGCTCTTTCCCGTCCATACTCCTCACGGACACTGTGGGGTTCAT
CCAGAAGCTTCCGACACAACTGA
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Coding sequence (CDS) from alignment at CM002465.1:101688..102110-

>rna5093 ID=rna5093|Name=rna5093|organism=Nannochloropsis gaditana|type=CDS|length=402bp|location=Sequence derived from alignment at CM002465.1:101688..102110- (Nannochloropsis gaditana)
GCTCTTTCCCGTCCATACTCCTCACGGACACTGTGGGGTTCATCCAGAAG
CTTCCGACACAACTGAATGTGTGCAGGGATACCCCGTGGTGGCCTTGGTG
GGCTATACCAACAGCGGAAAGTCGACACTCCTGAACCGGCTCACGCAGGC
GGGGGCGCTCGCCGAGGACCTACTCTTTGCCACGCTGGACCCTACCACAC
GGCTCTTTCCCGTCCATACTCCTCACGGACACTGTGGGGTTCATCCAGAA
GCTTCCGACACAACTGAATGTGTGCAGGGATACCCCGTGGTGGCCTTGGT
GGGCTATACCAACAGCGGAAAGTCGACACTCCTGAACCGGCTCACGCAGG
CGGGGGCGCTCGCCGAGGACCTACTCTTTGCCACGCTGGACCCTACCACA
CG
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Synonyms
Publications