rna5092, rna5092 (mRNA) Nannochloropsis gaditana

Overview
Namerna5092
Unique Namerna5092
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1400
Alignment locationCM002465.1:100626..101492 -

Link to JBrowse

Properties
Property NameValue
Productgtp-binding protein
Orig transcript idgnl|cribi|Naga_102242g1.2565.mrna
Orig protein idgnl|cribi|Naga_102242g1.2565
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002465.1supercontigCM002465.1:100626..101492 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_102242g1gene4917Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna5092rna5092-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM25593.1cds5080Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna5092 ID=rna5092|Name=rna5092|organism=Nannochloropsis gaditana|type=mRNA|length=1400bp
GGGAACCTGAGGGAGGGGGGAGGGGGGCGGGGGCAGGAGAAGGGTCGAAA
GAGATGCGTCAGTCGTGGGCAAGGAAGAAGGTGTAGGGTTTCCTTACCTC
CGGGCGCCTTCCTCCGTCTCTGGGCGGTCCCCAATGATCTCTCCTCTTTG
TCCGGCGTTCCCTCTTTTCCCCTCCTTTTCTTCCACCTGCCCTGCCGTTT
TCCCCTCTCTCGGGCGGAAGTGAGTCTTTTCAACGTTGATGAGAATTCTT
GCAACTCATTTGCATTTTGCTTTTTCCTTCTTCTCCTCCCTCCCTCCCTC
CTTCCCTCCCTCAGGACCTGGCCATCCGCCTGCTCCCGTATCGGGTGGAC
AGTGGGGCACAGTCGTACAAGCAAGTGGAGGAAGGGCAAGAGATCGACTG
GGGGGCCCTAGCCAAAGGGAGGCACGTGTACAAGGAGCGGCTGCAACGCG
GAGAAGTCACGGCTTTACCCACAGGAAGCGTGCCAGTCGCGTCCTACAAG
GTAACGGCCGCCGCAGCGTGATAGTTGGTTGGGGGGGGTGAACAGGGATG
TACGAATAGCTTTTTCTTGGAAGAAGGTTTTTGACTCAAGACTTGGAGGG
GCGAAAACGGAGGAAAATGAACAGGAAGCTTTGATTTAGAAAATGTGAAC
ACCAGCCATATGGATTCGATGACATCGGTCGAAAAGGAGAAGAATGACCC
CTGCAGTATAGAAACCGCAAAAGCCGCCATAGCGCCCCATGTGTCGTGTG
ACATCGCGGGTGTGTAGTTCATAATTATGTCTCTCTCTTTCTTGAGGGGA
TGGAATGATAAGGTGTCAATAATGTGCGTTGGGAAAGACGTGGAGAGCAA
GGAGCTGTCGAAACGTACAGCGGCCGGGGGGAAGTCTCTGCGAACCCTGG
TAGGGCCCGCCGAGGGACAAGAGGAAGGACCGAGACGCAGGGTGATGGAA
GAAGGAGATTGTGCATTATCGTCATCCCCAAGTACGATGCTCGTGTTCCT
TTTCTTTGGTCACGGTCGTTGAGGTCATTATTGTGCTATTTTGATACTCA
GGCATGTATAAGGGGGCTATGGACCCAGAAGCGCTTGGCGTTGCCAACCG
TCCCTTGAGTCAAAGGGCTTACATGCTAGAAATGTACCGCATTCCAGCGC
AGCTTAAACTAAGCGCGAGCACGTGTGTGCCCCCACATCTTTGAATGTAC
ATATGCTTACATTAATGCTATCTTACATGCCAAGCTCTGCTGGCGGATAA
TCGACATCCCCCTCGTCTGGCAAACCAATCTAGGCCAGCGTGAATAGCTC
CGGTCACGGCGTACCAATAGATTGACATTCTTACACGTACCTCATCCCCC
GGAGCATGTACACCATAGTTTAACAACAACATACCGCAATATGTCCATCA
back to top

protein sequence of rna5092

>rna5092-protein ID=rna5092-protein|Name=rna5092|organism=Nannochloropsis gaditana|type=polypeptide|length=104bp
MADVLVHLVDASNPMWRKQKAAVDSTLEDMGMGHKPRIVLFNKMDALSEE
ELEAWSDGWAERMRETEAGTGRGRPRRRRVAGRCPRGEEGGRRKRRRGRR
RDWK
back to top

mRNA from alignment at CM002465.1:100626..101492-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna5092 ID=rna5092|Name=rna5092|organism=Nannochloropsis gaditana|type=mRNA|length=867bp|location=Sequence derived from alignment at CM002465.1:100626..101492- (Nannochloropsis gaditana)
ATGGCCGACGTCCTCGTTCATCTGGTGGACGCCTCCAACCCCATGTGGCG
AAAGCAGAAGGCTGGTGCGTGGATGGGCGGATGGGAGGGCAAGAGGGAGG
ACGGGACCGAGGACGGGAGGGAGGGCGGACAGAAAGTGGTGTGATCGACG
CGGTGGATTCCAGGTTGTCAAGGCAACGGAGAAGGGTAGATAGCACGTGG
TTGACCTTTGGCTTCACGGACACGAGATAAGAGCAAGAAGCGGTCCGAGG
ATCCTAAGATAACCCTCCCTCCCTCCCCTCCTCTTTCCCTCCCTCCCTCC
CTCCCTCCCTCCTGCCAGCCGTGGACAGCACCCTGGAAGACATGGGGATG
GGCCACAAGCCTCGGATCGTGCTCTTCAACAAAATGGACGCGCTGAGCGA
GGTAGGGAGCCGCGTTCTCCCTTTTCAGCGCGCTCGTCTTTCCTCTCCCG
GCACTCGTCCCTCAGTTTCTGCCCCTCCTCATTCTCCGGCGGTTCCCCTC
CTTCCTCTGGAAATCTTTTCCTCTTCTTTCTCTTCTTTCCACTATTTATC
AGGAGGAGCTAGAGGCATGGTCGGACGGCTGGGCGGAGAGGATGCGAGAG
ACGGAGGCGGGAACTGGGAGAGGGCGTCCGAGGTAGGGAAAGAAGTCAAG
ACGAGGGAGGGGGAGGAGGGGGGGGGAGAGGAAGCTGCAGAGCCGGTGGA
CAAGATCTTCCACGTTCTCGGGGGCTCACTATACGTGCATGTTTTGCTAC
GCATCCCTCCCGTCCCACACCCCAGCAAGGAGAAGACGAGTAGCAGGGAG
GTGTCCGCGGGGAGAGGAGGGGGGGAGGAGGAAGAGGAGGAGGGGGAGAA
GAAGGGACTGGAAATAG
back to top

Coding sequence (CDS) from alignment at CM002465.1:100626..101492-

>rna5092 ID=rna5092|Name=rna5092|organism=Nannochloropsis gaditana|type=CDS|length=1260bp|location=Sequence derived from alignment at CM002465.1:100626..101492- (Nannochloropsis gaditana)
GAGAAGACGAGTAGCAGGGAGGTGTCCGCGGGGAGAGGAGGGGGGGAGGA
GGAAGAGGAGGAGGGGGAGAAGAAGGGACTGGAAATAGGAGGAGCTAGAG
GCATGGTCGGACGGCTGGGCGGAGAGGATGCGAGAGACGGAGGCGGGAAC
TGGGAGAGGGCGTCCGAGCCGTGGACAGCACCCTGGAAGACATGGGGATG
GGCCACAAGCCTCGGATCGTGCTCTTCAACAAAATGGACGCGCTGAGCGA
GATGGCCGACGTCCTCGTTCATCTGGTGGACGCCTCCAACCCCATGTGGC
GAAAGCAGAAGGCTGGAGAAGACGAGTAGCAGGGAGGTGTCCGCGGGGAG
AGGAGGGGGGGAGGAGGAAGAGGAGGAGGGGGAGAAGAAGGGACTGGAAA
TAGGAGGAGCTAGAGGCATGGTCGGACGGCTGGGCGGAGAGGATGCGAGA
GACGGAGGCGGGAACTGGGAGAGGGCGTCCGAGCCGTGGACAGCACCCTG
GAAGACATGGGGATGGGCCACAAGCCTCGGATCGTGCTCTTCAACAAAAT
GGACGCGCTGAGCGAGATGGCCGACGTCCTCGTTCATCTGGTGGACGCCT
CCAACCCCATGTGGCGAAAGCAGAAGGCTGGAGAAGACGAGTAGCAGGGA
GGTGTCCGCGGGGAGAGGAGGGGGGGAGGAGGAAGAGGAGGAGGGGGAGA
AGAAGGGACTGGAAATAGGAGGAGCTAGAGGCATGGTCGGACGGCTGGGC
GGAGAGGATGCGAGAGACGGAGGCGGGAACTGGGAGAGGGCGTCCGAGCC
GTGGACAGCACCCTGGAAGACATGGGGATGGGCCACAAGCCTCGGATCGT
GCTCTTCAACAAAATGGACGCGCTGAGCGAGATGGCCGACGTCCTCGTTC
ATCTGGTGGACGCCTCCAACCCCATGTGGCGAAAGCAGAAGGCTGGAGAA
GACGAGTAGCAGGGAGGTGTCCGCGGGGAGAGGAGGGGGGGAGGAGGAAG
AGGAGGAGGGGGAGAAGAAGGGACTGGAAATAGGAGGAGCTAGAGGCATG
GTCGGACGGCTGGGCGGAGAGGATGCGAGAGACGGAGGCGGGAACTGGGA
GAGGGCGTCCGAGCCGTGGACAGCACCCTGGAAGACATGGGGATGGGCCA
CAAGCCTCGGATCGTGCTCTTCAACAAAATGGACGCGCTGAGCGAGATGG
CCGACGTCCTCGTTCATCTGGTGGACGCCTCCAACCCCATGTGGCGAAAG
CAGAAGGCTG
back to top
Synonyms
Publications