EWM25593.1, cds5080 (CDS) Nannochloropsis gaditana

Overview
NameEWM25593.1
Unique Namecds5080
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002465.1:101429..101492 -
Alignment locationCM002465.1:101092..101174 -
Alignment locationCM002465.1:100861..100940 -
Alignment locationCM002465.1:100626..100713 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM25593.1
Productgtp-binding protein
Orig transcript idgnl|cribi|Naga_102242g1.2565.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002465.1supercontigCM002465.1:101429..101492 -
CM002465.1supercontigCM002465.1:101092..101174 -
CM002465.1supercontigCM002465.1:100861..100940 -
CM002465.1supercontigCM002465.1:100626..100713 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0000166nucleotide binding
GO:0005525GTP binding
Vocabulary: INTERPRO
TermDefinition
IPR016496GTPase_HflX
IPR027417P-loop_NTPase
Homology
BLAST of EWM25593.1 vs. NCBI_GenBank
Match: gi|585107388|gb|EWM25593.1| (gtp-binding protein [Nannochloropsis gaditana])

HSP 1 Score: 206.453 bits (524), Expect = 2.101e-67
Identity = 104/104 (100.00%), Postives = 104/104 (100.00%), Query Frame = 0
Query:    1 MADVLVHLVDASNPMWRKQKAAVDSTLEDMGMGHKPRIVLFNKMDALSEEELEAWSDGWAERMRETEAGTGRGRPRRRRVAGRCPRGEEGGRRKRRRGRRRDWK 104
            MADVLVHLVDASNPMWRKQKAAVDSTLEDMGMGHKPRIVLFNKMDALSEEELEAWSDGWAERMRETEAGTGRGRPRRRRVAGRCPRGEEGGRRKRRRGRRRDWK
Sbjct:    1 MADVLVHLVDASNPMWRKQKAAVDSTLEDMGMGHKPRIVLFNKMDALSEEELEAWSDGWAERMRETEAGTGRGRPRRRRVAGRCPRGEEGGRRKRRRGRRRDWK 104          
BLAST of EWM25593.1 vs. NCBI_GenBank
Match: gi|727082181|gb|KHF36434.1| (GTPase HflX [Paenibacillus sp. P1XP2])

HSP 1 Score: 67.0106 bits (162), Expect = 6.294e-11
Identity = 29/57 (50.88%), Postives = 41/57 (71.93%), Query Frame = 0
Query:    2 ADVLVHLVDASNPMWRKQKAAVDSTLEDMGMGHKPRIVLFNKMDALSEEELEAWSDG 58
            AD+++H+VDAS+PM  +Q   VDS LED+G   KP++VLFNK D  ++E+LE    G
Sbjct:  245 ADLILHVVDASSPMREEQMKVVDSILEDLGAADKPQLVLFNKKDVCTQEQLEMLPSG 301          
BLAST of EWM25593.1 vs. NCBI_GenBank
Match: gi|1072233982|gb|OEU18712.1| (hypothetical protein FRACYDRAFT_224939 [Fragilariopsis cylindrus CCMP1102])

HSP 1 Score: 66.6254 bits (161), Expect = 1.160e-10
Identity = 32/74 (43.24%), Postives = 46/74 (62.16%), Query Frame = 0
Query:    2 ADVLVHLVDASNPMWRKQKAAVDSTLEDMGMGHKPRIVLFNKMDALSEEELEA--WSDGWAERMRETEAGTGRG 73
            ADVLVH++D +NP W KQ+ AV + L DMG+  KP + + NK+D LSEE+ E   +   +A++     A  G G
Sbjct:  272 ADVLVHVIDVANPAWEKQERAVLAVLSDMGVADKPIVRVLNKIDLLSEEDAEYLKYEAAFADKTVAVSALFGEG 345          
BLAST of EWM25593.1 vs. NCBI_GenBank
Match: gi|224009828|ref|XP_002293872.1| (predicted protein [Thalassiosira pseudonana CCMP1335] >gi|220970544|gb|EED88881.1| predicted protein [Thalassiosira pseudonana CCMP1335])

HSP 1 Score: 64.6994 bits (156), Expect = 5.518e-10
Identity = 28/52 (53.85%), Postives = 38/52 (73.08%), Query Frame = 0
Query:    2 ADVLVHLVDASNPMWRKQKAAVDSTLEDMGMGHKPRIVLFNKMDALSEEELE 53
            ADVLVH+VD SNP WRKQ+ +V   L ++G G KP + +FNK+D L +E+ E
Sbjct:  276 ADVLVHIVDVSNPCWRKQEDSVTKVLSEIGAGDKPTVRVFNKLDLLDKEDAE 327          
BLAST of EWM25593.1 vs. NCBI_GenBank
Match: gi|397571092|gb|EJK47620.1| (hypothetical protein THAOC_33645 [Thalassiosira oceanica])

HSP 1 Score: 64.3142 bits (155), Expect = 7.500e-10
Identity = 26/52 (50.00%), Postives = 38/52 (73.08%), Query Frame = 0
Query:    2 ADVLVHLVDASNPMWRKQKAAVDSTLEDMGMGHKPRIVLFNKMDALSEEELE 53
            ADVL+H++D +NP WRKQ+ +V S L ++G G KP + +FNK+D L  E+ E
Sbjct:  435 ADVLIHIIDVANPTWRKQEESVTSVLNEIGAGSKPIVRVFNKLDLLEPEDAE 486          
BLAST of EWM25593.1 vs. NCBI_GenBank
Match: gi|551229502|ref|WP_022853298.1| (GTPase HflX [Thermodesulfatator atlanticus])

HSP 1 Score: 63.1586 bits (152), Expect = 1.858e-9
Identity = 29/52 (55.77%), Postives = 42/52 (80.77%), Query Frame = 0
Query:    2 ADVLVHLVDASNPMWRKQKAAVDSTLEDMGMGHKPRIVLFNKMDALSEEELE 53
            AD+L+HLVDASNP +  Q AAV++  E+MG+ H PR+++FNK+D L+ EE+E
Sbjct:  458 ADLLLHLVDASNPYYEDQIAAVENIFEEMGLDHLPRLLVFNKIDLLAPEEVE 509          
BLAST of EWM25593.1 vs. NCBI_GenBank
Match: gi|816612641|gb|KKM08885.1| (hypothetical protein SY88_22040 [Clostridiales bacterium PH28_bin88])

HSP 1 Score: 62.003 bits (149), Expect = 4.568e-9
Identity = 25/44 (56.82%), Postives = 36/44 (81.82%), Query Frame = 0
Query:    2 ADVLVHLVDASNPMWRKQKAAVDSTLEDMGMGHKPRIVLFNKMD 45
            AD+L+H++DAS+P W  Q AAV+  LE++G+ +KPRI +FNKMD
Sbjct:  447 ADLLLHVIDASSPRWEAQMAAVEQVLEELGVANKPRINVFNKMD 490          
BLAST of EWM25593.1 vs. NCBI_GenBank
Match: gi|1072873872|gb|OEU72760.1| (GTPase HflX, partial [Desulfuromonadales bacterium C00003068])

HSP 1 Score: 61.2326 bits (147), Expect = 5.778e-9
Identity = 25/54 (46.30%), Postives = 38/54 (70.37%), Query Frame = 0
Query:    2 ADVLVHLVDASNPMWRKQKAAVDSTLEDMGMGHKPRIVLFNKMDALSEEELEAW 55
            AD+L+H+VD SNP + +Q  AV+  L D+ +GH P +++FNK+D +  EE EA 
Sbjct:  191 ADLLMHVVDLSNPRFEEQIQAVEQILTDLDLGHIPHLLVFNKIDLVDPEECEAL 244          
BLAST of EWM25593.1 vs. NCBI_GenBank
Match: gi|1113219136|gb|OJU86830.1| (GTPase HflX, partial [Burkholderiales bacterium 66-5])

HSP 1 Score: 61.6178 bits (148), Expect = 6.432e-9
Identity = 36/93 (38.71%), Postives = 54/93 (58.06%), Query Frame = 0
Query:    2 ADVLVHLVDASNPMWRKQKAAVDSTLEDMGMGHKPRIVLFNKMDALSE-EELEAWSDGWAERMRETE-------AGTGRGRPRRRRVAGRCPR 86
            AD+L+H+VD +NP   +Q A V   LE++G    P++++FNK+DAL++ E   AW D +A + RE E       AG G   P R  ++ R  R
Sbjct:  282 ADLLLHVVDTANPGHSEQMAQVQQVLEEIGAADVPQVLVFNKVDALADLERPVAWQDAYALQGRELERVFVSARAGDGLA-PLRELLSKRATR 373          
BLAST of EWM25593.1 vs. NCBI_GenBank
Match: gi|639201255|ref|WP_024539689.1| (GTPase HflX [Comamonas badia])

HSP 1 Score: 61.6178 bits (148), Expect = 6.460e-9
Identity = 40/107 (37.38%), Postives = 57/107 (53.27%), Query Frame = 0
Query:    2 ADVLVHLVDASNPMWRKQKAAVDSTLEDMGMGHKPRIVLFNKMDALSE-EELEAWSDGWAERMRETE-------AGTGRGRPRR-------RRVA--GRCPRGEEGG 91
            AD+L+H+VD +NP   +Q A V   LE++G    P++++FNK+DAL++ E   AW D +A + RE E       AG G    R        RR A  G C   E+ G
Sbjct:  282 ADLLLHVVDTANPGHSEQMAQVQQVLEEIGAADVPQVLVFNKVDALADLERPVAWQDAYALQGRELERVFVSARAGDGLAALRELLSKRATRRAAESGDCANAEQPG 388          
The following BLAST results are available for this feature:
BLAST of EWM25593.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585107388|gb|EWM25593.1|2.101e-67100.00gtp-binding protein [Nannochloropsis gaditana][more]
gi|727082181|gb|KHF36434.1|6.294e-1150.88GTPase HflX [Paenibacillus sp. P1XP2][more]
gi|1072233982|gb|OEU18712.1|1.160e-1043.24hypothetical protein FRACYDRAFT_224939 [Fragilario... [more]
gi|224009828|ref|XP_002293872.1|5.518e-1053.85predicted protein [Thalassiosira pseudonana CCMP13... [more]
gi|397571092|gb|EJK47620.1|7.500e-1050.00hypothetical protein THAOC_33645 [Thalassiosira oc... [more]
gi|551229502|ref|WP_022853298.1|1.858e-955.77GTPase HflX [Thermodesulfatator atlanticus][more]
gi|816612641|gb|KKM08885.1|4.568e-956.82hypothetical protein SY88_22040 [Clostridiales bac... [more]
gi|1072873872|gb|OEU72760.1|5.778e-946.30GTPase HflX, partial [Desulfuromonadales bacterium... [more]
gi|1113219136|gb|OJU86830.1|6.432e-938.71GTPase HflX, partial [Burkholderiales bacterium 66... [more]
gi|639201255|ref|WP_024539689.1|6.460e-937.38GTPase HflX [Comamonas badia][more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna5092rna5092Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications