EWM25593.1, cds5080 (CDS) Nannochloropsis gaditana
Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM25593.1 vs. NCBI_GenBank
Match: gi|585107388|gb|EWM25593.1| (gtp-binding protein [Nannochloropsis gaditana]) HSP 1 Score: 206.453 bits (524), Expect = 2.101e-67 Identity = 104/104 (100.00%), Postives = 104/104 (100.00%), Query Frame = 0 Query: 1 MADVLVHLVDASNPMWRKQKAAVDSTLEDMGMGHKPRIVLFNKMDALSEEELEAWSDGWAERMRETEAGTGRGRPRRRRVAGRCPRGEEGGRRKRRRGRRRDWK 104 MADVLVHLVDASNPMWRKQKAAVDSTLEDMGMGHKPRIVLFNKMDALSEEELEAWSDGWAERMRETEAGTGRGRPRRRRVAGRCPRGEEGGRRKRRRGRRRDWK Sbjct: 1 MADVLVHLVDASNPMWRKQKAAVDSTLEDMGMGHKPRIVLFNKMDALSEEELEAWSDGWAERMRETEAGTGRGRPRRRRVAGRCPRGEEGGRRKRRRGRRRDWK 104
BLAST of EWM25593.1 vs. NCBI_GenBank
Match: gi|727082181|gb|KHF36434.1| (GTPase HflX [Paenibacillus sp. P1XP2]) HSP 1 Score: 67.0106 bits (162), Expect = 6.294e-11 Identity = 29/57 (50.88%), Postives = 41/57 (71.93%), Query Frame = 0 Query: 2 ADVLVHLVDASNPMWRKQKAAVDSTLEDMGMGHKPRIVLFNKMDALSEEELEAWSDG 58 AD+++H+VDAS+PM +Q VDS LED+G KP++VLFNK D ++E+LE G Sbjct: 245 ADLILHVVDASSPMREEQMKVVDSILEDLGAADKPQLVLFNKKDVCTQEQLEMLPSG 301
BLAST of EWM25593.1 vs. NCBI_GenBank
Match: gi|1072233982|gb|OEU18712.1| (hypothetical protein FRACYDRAFT_224939 [Fragilariopsis cylindrus CCMP1102]) HSP 1 Score: 66.6254 bits (161), Expect = 1.160e-10 Identity = 32/74 (43.24%), Postives = 46/74 (62.16%), Query Frame = 0 Query: 2 ADVLVHLVDASNPMWRKQKAAVDSTLEDMGMGHKPRIVLFNKMDALSEEELEA--WSDGWAERMRETEAGTGRG 73 ADVLVH++D +NP W KQ+ AV + L DMG+ KP + + NK+D LSEE+ E + +A++ A G G Sbjct: 272 ADVLVHVIDVANPAWEKQERAVLAVLSDMGVADKPIVRVLNKIDLLSEEDAEYLKYEAAFADKTVAVSALFGEG 345
BLAST of EWM25593.1 vs. NCBI_GenBank
Match: gi|224009828|ref|XP_002293872.1| (predicted protein [Thalassiosira pseudonana CCMP1335] >gi|220970544|gb|EED88881.1| predicted protein [Thalassiosira pseudonana CCMP1335]) HSP 1 Score: 64.6994 bits (156), Expect = 5.518e-10 Identity = 28/52 (53.85%), Postives = 38/52 (73.08%), Query Frame = 0 Query: 2 ADVLVHLVDASNPMWRKQKAAVDSTLEDMGMGHKPRIVLFNKMDALSEEELE 53 ADVLVH+VD SNP WRKQ+ +V L ++G G KP + +FNK+D L +E+ E Sbjct: 276 ADVLVHIVDVSNPCWRKQEDSVTKVLSEIGAGDKPTVRVFNKLDLLDKEDAE 327
BLAST of EWM25593.1 vs. NCBI_GenBank
Match: gi|397571092|gb|EJK47620.1| (hypothetical protein THAOC_33645 [Thalassiosira oceanica]) HSP 1 Score: 64.3142 bits (155), Expect = 7.500e-10 Identity = 26/52 (50.00%), Postives = 38/52 (73.08%), Query Frame = 0 Query: 2 ADVLVHLVDASNPMWRKQKAAVDSTLEDMGMGHKPRIVLFNKMDALSEEELE 53 ADVL+H++D +NP WRKQ+ +V S L ++G G KP + +FNK+D L E+ E Sbjct: 435 ADVLIHIIDVANPTWRKQEESVTSVLNEIGAGSKPIVRVFNKLDLLEPEDAE 486
BLAST of EWM25593.1 vs. NCBI_GenBank
Match: gi|551229502|ref|WP_022853298.1| (GTPase HflX [Thermodesulfatator atlanticus]) HSP 1 Score: 63.1586 bits (152), Expect = 1.858e-9 Identity = 29/52 (55.77%), Postives = 42/52 (80.77%), Query Frame = 0 Query: 2 ADVLVHLVDASNPMWRKQKAAVDSTLEDMGMGHKPRIVLFNKMDALSEEELE 53 AD+L+HLVDASNP + Q AAV++ E+MG+ H PR+++FNK+D L+ EE+E Sbjct: 458 ADLLLHLVDASNPYYEDQIAAVENIFEEMGLDHLPRLLVFNKIDLLAPEEVE 509
BLAST of EWM25593.1 vs. NCBI_GenBank
Match: gi|816612641|gb|KKM08885.1| (hypothetical protein SY88_22040 [Clostridiales bacterium PH28_bin88]) HSP 1 Score: 62.003 bits (149), Expect = 4.568e-9 Identity = 25/44 (56.82%), Postives = 36/44 (81.82%), Query Frame = 0 Query: 2 ADVLVHLVDASNPMWRKQKAAVDSTLEDMGMGHKPRIVLFNKMD 45 AD+L+H++DAS+P W Q AAV+ LE++G+ +KPRI +FNKMD Sbjct: 447 ADLLLHVIDASSPRWEAQMAAVEQVLEELGVANKPRINVFNKMD 490
BLAST of EWM25593.1 vs. NCBI_GenBank
Match: gi|1072873872|gb|OEU72760.1| (GTPase HflX, partial [Desulfuromonadales bacterium C00003068]) HSP 1 Score: 61.2326 bits (147), Expect = 5.778e-9 Identity = 25/54 (46.30%), Postives = 38/54 (70.37%), Query Frame = 0 Query: 2 ADVLVHLVDASNPMWRKQKAAVDSTLEDMGMGHKPRIVLFNKMDALSEEELEAW 55 AD+L+H+VD SNP + +Q AV+ L D+ +GH P +++FNK+D + EE EA Sbjct: 191 ADLLMHVVDLSNPRFEEQIQAVEQILTDLDLGHIPHLLVFNKIDLVDPEECEAL 244
BLAST of EWM25593.1 vs. NCBI_GenBank
Match: gi|1113219136|gb|OJU86830.1| (GTPase HflX, partial [Burkholderiales bacterium 66-5]) HSP 1 Score: 61.6178 bits (148), Expect = 6.432e-9 Identity = 36/93 (38.71%), Postives = 54/93 (58.06%), Query Frame = 0 Query: 2 ADVLVHLVDASNPMWRKQKAAVDSTLEDMGMGHKPRIVLFNKMDALSE-EELEAWSDGWAERMRETE-------AGTGRGRPRRRRVAGRCPR 86 AD+L+H+VD +NP +Q A V LE++G P++++FNK+DAL++ E AW D +A + RE E AG G P R ++ R R Sbjct: 282 ADLLLHVVDTANPGHSEQMAQVQQVLEEIGAADVPQVLVFNKVDALADLERPVAWQDAYALQGRELERVFVSARAGDGLA-PLRELLSKRATR 373
BLAST of EWM25593.1 vs. NCBI_GenBank
Match: gi|639201255|ref|WP_024539689.1| (GTPase HflX [Comamonas badia]) HSP 1 Score: 61.6178 bits (148), Expect = 6.460e-9 Identity = 40/107 (37.38%), Postives = 57/107 (53.27%), Query Frame = 0 Query: 2 ADVLVHLVDASNPMWRKQKAAVDSTLEDMGMGHKPRIVLFNKMDALSE-EELEAWSDGWAERMRETE-------AGTGRGRPRR-------RRVA--GRCPRGEEGG 91 AD+L+H+VD +NP +Q A V LE++G P++++FNK+DAL++ E AW D +A + RE E AG G R RR A G C E+ G Sbjct: 282 ADLLLHVVDTANPGHSEQMAQVQQVLEEIGAADVPQVLVFNKVDALADLERPVAWQDAYALQGRELERVFVSARAGDGLAALRELLSKRATRRAAESGDCANAEQPG 388 The following BLAST results are available for this feature:
BLAST of EWM25593.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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