rna5089, rna5089 (mRNA) Nannochloropsis gaditana

Overview
Namerna5089
Unique Namerna5089
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length357
Alignment locationCM002465.1:94941..96353 +

Link to JBrowse

Properties
Property NameValue
Productuv-damaged response dna-binding protein
Orig transcript idgnl|cribi|Naga_100813g5.3596.mrna
Orig protein idgnl|cribi|Naga_100813g5.3596
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002465.1supercontigCM002465.1:94941..96353 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100813g5gene4914Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna5089rna5089-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM25595.1cds5077Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna5089 ID=rna5089|Name=rna5089|organism=Nannochloropsis gaditana|type=mRNA|length=357bp
ATGGCGTACAACTATGTGGTCACGAATCAGAAACCGACCACAGTCACACA
CGCCCTCACTGCTTCCTTCACCTCTCCCGATGCGTTAAACCTGTTGCTCA
TCCGGAACACGCGTTTGGAGGTGCATGAAATGGGGCCAGAAGGACTCGTA
CCGGTAGGAGGACGGTTTGAAGGAGGGAAAGGCGTTGATCGAACGGAGAG
GAAGGGCGAGGCATGTCCTGGACGTGCGCATTTACGGGCGGGTCAGCACG
GCCTGCATTTTAAAGCTGGCCAACGAGCCTCAAGACGTCGTTTTCCTGTC
AACGGAACGGTACCAGTACTCCCTCTTGGTCTACGATGCAGCCCGGGGCG
AGATTAA
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protein sequence of rna5089

>rna5089-protein ID=rna5089-protein|Name=rna5089|organism=Nannochloropsis gaditana|type=polypeptide|length=192bp
MAGTENPLGGEKGEEKDEKVGDKEKEGRRSGGEVARGHVQDLGLMFGTQQ
GMIGSILPISEEDYRFFVALTKCLNKVVKGVGGLSHEEYRRFLTDKAISD
TQGFVDGDLIESFLELPTQRMEEVVELMRVEGVGGESKTDAALCDQAGGG
KGEGKMEVVGLQEHAGKEEEKKDGVLSLDEVYRRVEDMTRLH
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mRNA from alignment at CM002465.1:94941..96353+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna5089 ID=rna5089|Name=rna5089|organism=Nannochloropsis gaditana|type=mRNA|length=1413bp|location=Sequence derived from alignment at CM002465.1:94941..96353+ (Nannochloropsis gaditana)
cctccctcccttcctccttccttccctctttccctcccaggtcCGGAAGA
ACAGTGAGGCCACGACGGACGAGGAGCGCTATCGTCTGCAGACTATCGGG
CATTATCATCTTGGCGACTTTGTGAACCGCTTTGTCCGAGGCTCCCTGGT
GATGCAGCCTAAGGAAGgcgaggtagggagggaggatgggaggggggacg
ggaaggagggagtggttGAGAACGGGCGAGTCATTTTTAAGCACGTTGTG
GACCGGAAAAGGGGGGATATTCACACGACGATaagcagggggggaaattg
GTTCTTGGATGTGTGTGAAAATCACTGCTCatcgtcccttcctcggttCA
CCCTGTCCtacagagggagggtgggaaggagggcgggaaggagggcggga
aggagggcgggaaggacgaggaggaggccatggccgggACCGAAAATCCt
ctgggaggagaaaagggagaagaaaaggacgagAAAGTGGGGGataagga
gaaagagggccgCCGCAGCGGCGGGGAAGTAGCACGTGGGCATGTGCAGG
ACCTGGGGCTGATGTTCGGGACGCAACAGGGGATGATTGGATCCATCCTA
CCCATTTCCGAGGAGGATTACCGCTTCTTCGTGGCCCTGACCAAGTGTTT
GAACAAGGtaggggccgagggagggcggagaggaggggctgaTGGAGGAA
GCCTCAGGTCCTTTTTGCGTACTCGGTGTTGGGAATGCGGTGAAAACCTC
CGAAGGCCAGATCTCTGTTTCTTTCGCGTGGCCTCTTCggctccctgcct
ctctccctccctctctccctccctccctcgcattctccctccttccttct
caccttctcccctcctttccttcctcctccccatcgctcCGTGCCTGTCA
GGTGGTGAAAGGCGTGGGTGGACTTTCGCATGAAGAATATCGCCGATTTT
TAACGGACAAGGCCATTTCAGATACGCAAGGATTCGTCGATGGGGACTTG
ATCGAGTCGTTCCTGGAGCTCCCGACGcagcggatggaggaggtggtgga
gctgATGCGGGTTGAGGGAGTGGGCGGAGAGAGCAAGACTGATGCTGCCC
TTTGCGaccaggcgggaggggggaagggagaggggaagatggaagtgGTG
GGGTTGCAAGAGCATgccggaaaggaggaggaaaagaaagatggGGTGCT
CTCATTGGATGAGGTGTATCGAcgcgtggaggacatgaCGCGATTGCATT
GAAAGGGGTGGTCTGAGACTAGGAGGGCTGGTCGATCCCTTCAAAAATCt
cgggggggaaaaaaatatagAGGCGTTGAGGCGGGTTGAATAAGTCATGT
AGAATGCGGCGTTTTCCACGATATATGCGAAGGAACCCATGTCAAAAGAT
TGCCATATTTTTA
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Coding sequence (CDS) from alignment at CM002465.1:94941..96353+

>rna5089 ID=rna5089|Name=rna5089|organism=Nannochloropsis gaditana|type=CDS|length=1158bp|location=Sequence derived from alignment at CM002465.1:94941..96353+ (Nannochloropsis gaditana)
atggccgggACCGAAAATCCtctgggaggagaaaagggagaagaaaagga
cgagAAAGTGGGGGataaggagaaagagggccgCCGCAGCGGCGGGGAAG
TAGCACGTGGGCATGTGCAGGACCTGGGGCTGATGTTCGGGACGCAACAG
GGGATGATTGGATCCATCCTACCCATTTCCGAGGAGGATTACCGCTTCTT
CGTGGCCCTGACCAAGTGTTTGAACAAGGTGGTGAAAGGCGTGGGTGGAC
TTTCGCATGAAGAATATCGCCGATTTTTAACGGACAAGGCCATTTCAGAT
ACGCAAGGATTCGTCGATGGGGACTTGATCGAGTCGTTCCTGGAGCTCCC
GACGcagcggatggaggaggtggtggagctgATGCGGGTTGAGGGAGTGG
GCGGAGAGAGCAAGACTGATGCTGCCCTTTGCGaccaggcgggagggggg
aagggagaggggaagatggaagtgGTGGGGTTGCAAGAGCATgccggaaa
ggaggaggaaaagaaagatggGGTGCTCTCATTGGATGAGGTGTATCGAc
gcgtggaggacatgaCGCGATTGCATTGAatggccgggACCGAAAATCCt
ctgggaggagaaaagggagaagaaaaggacgagAAAGTGGGGGataagga
gaaagagggccgCCGCAGCGGCGGGGAAGTAGCACGTGGGCATGTGCAGG
ACCTGGGGCTGATGTTCGGGACGCAACAGGGGATGATTGGATCCATCCTA
CCCATTTCCGAGGAGGATTACCGCTTCTTCGTGGCCCTGACCAAGTGTTT
GAACAAGGTGGTGAAAGGCGTGGGTGGACTTTCGCATGAAGAATATCGCC
GATTTTTAACGGACAAGGCCATTTCAGATACGCAAGGATTCGTCGATGGG
GACTTGATCGAGTCGTTCCTGGAGCTCCCGACGcagcggatggaggaggt
ggtggagctgATGCGGGTTGAGGGAGTGGGCGGAGAGAGCAAGACTGATG
CTGCCCTTTGCGaccaggcgggaggggggaagggagaggggaagatggaa
gtgGTGGGGTTGCAAGAGCATgccggaaaggaggaggaaaagaaagatgg
GGTGCTCTCATTGGATGAGGTGTATCGAcgcgtggaggacatgaCGCGAT
TGCATTGA
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Synonyms
Publications