EWM25595.1, cds5077 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM25595.1 vs. NCBI_GenBank
Match: gi|553189148|ref|XP_005854942.1| (uv-damaged dna-binding protein [Nannochloropsis gaditana CCMP526] >gi|422294117|gb|EKU21417.1| uv-damaged dna-binding protein [Nannochloropsis gaditana CCMP526] >gi|585107391|gb|EWM25595.1| uv-damaged response dna-binding protein [Nannochloropsis gaditana]) HSP 1 Score: 378.637 bits (971), Expect = 9.108e-133 Identity = 192/192 (100.00%), Postives = 192/192 (100.00%), Query Frame = 0
Query: 1 MAGTENPLGGEKGEEKDEKVGDKEKEGRRSGGEVARGHVQDLGLMFGTQQGMIGSILPISEEDYRFFVALTKCLNKVVKGVGGLSHEEYRRFLTDKAISDTQGFVDGDLIESFLELPTQRMEEVVELMRVEGVGGESKTDAALCDQAGGGKGEGKMEVVGLQEHAGKEEEKKDGVLSLDEVYRRVEDMTRLH 192
MAGTENPLGGEKGEEKDEKVGDKEKEGRRSGGEVARGHVQDLGLMFGTQQGMIGSILPISEEDYRFFVALTKCLNKVVKGVGGLSHEEYRRFLTDKAISDTQGFVDGDLIESFLELPTQRMEEVVELMRVEGVGGESKTDAALCDQAGGGKGEGKMEVVGLQEHAGKEEEKKDGVLSLDEVYRRVEDMTRLH
Sbjct: 1 MAGTENPLGGEKGEEKDEKVGDKEKEGRRSGGEVARGHVQDLGLMFGTQQGMIGSILPISEEDYRFFVALTKCLNKVVKGVGGLSHEEYRRFLTDKAISDTQGFVDGDLIESFLELPTQRMEEVVELMRVEGVGGESKTDAALCDQAGGGKGEGKMEVVGLQEHAGKEEEKKDGVLSLDEVYRRVEDMTRLH 192
BLAST of EWM25595.1 vs. NCBI_GenBank
Match: gi|301121252|ref|XP_002908353.1| (DNA damage-binding protein, putative [Phytophthora infestans T30-4] >gi|262103384|gb|EEY61436.1| DNA damage-binding protein, putative [Phytophthora infestans T30-4]) HSP 1 Score: 100.908 bits (250), Expect = 2.231e-21 Identity = 44/95 (46.32%), Postives = 69/95 (72.63%), Query Frame = 0
Query: 39 VQDLGLMFGTQQGMIGSILPISEEDYRFFVALTKCLNKVVKGVGGLSHEEYRRFLTDKAISDTQGFVDGDLIESFLELPTQRMEEVVELMRVEGV 133
VQ+ ++FGT GMIG ILPIS++ Y F + + + L VVKGVGG SH+++R F +++S+ + F+DGDL+ESFL+LP +M +VV+ + +G+
Sbjct: 1033 VQNQSMLFGTVSGMIGVILPISKDQYSFLLRVQQALTHVVKGVGGFSHKDWRTFENRRSVSEARNFIDGDLVESFLDLPKPQMTKVVDKLNSDGM 1127
BLAST of EWM25595.1 vs. NCBI_GenBank
Match: gi|970660322|gb|KUF97882.1| (hypothetical protein AM588_10010651 [Phytophthora nicotianae]) HSP 1 Score: 99.7525 bits (247), Expect = 6.030e-21 Identity = 43/95 (45.26%), Postives = 70/95 (73.68%), Query Frame = 0
Query: 39 VQDLGLMFGTQQGMIGSILPISEEDYRFFVALTKCLNKVVKGVGGLSHEEYRRFLTDKAISDTQGFVDGDLIESFLELPTQRMEEVVELMRVEGV 133
VQ+ ++FGT GMIG ILPI+++ Y F + + + L +VVKGVGG SH+++R F +++S+ + F+DGDL+ESFL+LP +M +VV+ + +G+
Sbjct: 901 VQNQSMLFGTVSGMIGVILPITKDQYAFLLRVQQALTQVVKGVGGFSHKDWRTFENRRSVSEARNFIDGDLVESFLDLPKPQMMKVVDKLNSDGM 995
BLAST of EWM25595.1 vs. NCBI_GenBank
Match: gi|586646685|ref|XP_006828193.1| (DNA damage-binding protein 1 [Amborella trichopoda] >gi|548832840|gb|ERM95609.1| hypothetical protein AMTR_s00023p00145060 [Amborella trichopoda]) HSP 1 Score: 99.7525 bits (247), Expect = 6.637e-21 Identity = 46/87 (52.87%), Postives = 62/87 (71.26%), Query Frame = 0
Query: 44 LMFGTQQGMIGSILPISEEDYRFFVALTKCLNKVVKGVGGLSHEEYRRFLTDKAISDTQGFVDGDLIESFLELPTQRMEEVVELMRV 130
++FGT G IG + +S+ ++FF L CL KV+KGVGGLSHE++R F +K +D +GF+DGDLIESFL+L RMEE+ MRV
Sbjct: 987 VIFGTVNGAIGIVASLSQHQFKFFEKLQGCLVKVIKGVGGLSHEQWRSFNNEKKTADARGFLDGDLIESFLDLSRARMEEISTAMRV 1073
BLAST of EWM25595.1 vs. NCBI_GenBank
Match: gi|570997892|gb|ETP54184.1| (hypothetical protein F442_00994 [Phytophthora parasitica P10297]) HSP 1 Score: 99.3673 bits (246), Expect = 9.914e-21 Identity = 43/95 (45.26%), Postives = 70/95 (73.68%), Query Frame = 0
Query: 39 VQDLGLMFGTQQGMIGSILPISEEDYRFFVALTKCLNKVVKGVGGLSHEEYRRFLTDKAISDTQGFVDGDLIESFLELPTQRMEEVVELMRVEGV 133
VQ+ ++FGT GMIG ILPI+++ Y F + + + L +VVKGVGG SH+++R F +++S+ + F+DGDL+ESFL+LP +M +VV+ + +G+
Sbjct: 1031 VQNQSMLFGTVSGMIGVILPITKDQYAFLLRVQQALTQVVKGVGGFSHKDWRTFENRRSVSEARNFIDGDLVESFLDLPKPQMMKVVDKLNSDGM 1125
BLAST of EWM25595.1 vs. NCBI_GenBank
Match: gi|675163645|ref|XP_008890707.1| (hypothetical protein PPTG_00887 [Phytophthora parasitica INRA-310] >gi|568110053|gb|ETN24660.1| hypothetical protein PPTG_00887 [Phytophthora parasitica INRA-310]) HSP 1 Score: 99.3673 bits (246), Expect = 9.914e-21 Identity = 43/95 (45.26%), Postives = 70/95 (73.68%), Query Frame = 0
Query: 39 VQDLGLMFGTQQGMIGSILPISEEDYRFFVALTKCLNKVVKGVGGLSHEEYRRFLTDKAISDTQGFVDGDLIESFLELPTQRMEEVVELMRVEGV 133
VQ+ ++FGT GMIG ILPI+++ Y F + + + L +VVKGVGG SH+++R F +++S+ + F+DGDL+ESFL+LP +M +VV+ + +G+
Sbjct: 1031 VQNQSMLFGTVSGMIGVILPITKDQYAFLLRVQQALTQVVKGVGGFSHKDWRTFENRRSVSEARNFIDGDLVESFLDLPKPQMMKVVDKLNSDGM 1125
BLAST of EWM25595.1 vs. NCBI_GenBank
Match: gi|567999509|gb|ETL49547.1| (hypothetical protein L916_00970 [Phytophthora parasitica]) HSP 1 Score: 99.3673 bits (246), Expect = 9.914e-21 Identity = 43/95 (45.26%), Postives = 70/95 (73.68%), Query Frame = 0
Query: 39 VQDLGLMFGTQQGMIGSILPISEEDYRFFVALTKCLNKVVKGVGGLSHEEYRRFLTDKAISDTQGFVDGDLIESFLELPTQRMEEVVELMRVEGV 133
VQ+ ++FGT GMIG ILPI+++ Y F + + + L +VVKGVGG SH+++R F +++S+ + F+DGDL+ESFL+LP +M +VV+ + +G+
Sbjct: 1031 VQNQSMLFGTVSGMIGVILPITKDQYAFLLRVQQALTQVVKGVGGFSHKDWRTFENRRSVSEARNFIDGDLVESFLDLPKPQMMKVVDKLNSDGM 1125
BLAST of EWM25595.1 vs. NCBI_GenBank
Match: gi|566033493|gb|ETI56404.1| (hypothetical protein F443_01047 [Phytophthora parasitica P1569] >gi|568028674|gb|ETM02612.1| hypothetical protein L917_00938 [Phytophthora parasitica] >gi|568059286|gb|ETM55862.1| hypothetical protein L914_00977 [Phytophthora parasitica]) HSP 1 Score: 99.3673 bits (246), Expect = 9.914e-21 Identity = 43/95 (45.26%), Postives = 70/95 (73.68%), Query Frame = 0
Query: 39 VQDLGLMFGTQQGMIGSILPISEEDYRFFVALTKCLNKVVKGVGGLSHEEYRRFLTDKAISDTQGFVDGDLIESFLELPTQRMEEVVELMRVEGV 133
VQ+ ++FGT GMIG ILPI+++ Y F + + + L +VVKGVGG SH+++R F +++S+ + F+DGDL+ESFL+LP +M +VV+ + +G+
Sbjct: 1031 VQNQSMLFGTVSGMIGVILPITKDQYAFLLRVQQALTQVVKGVGGFSHKDWRTFENRRSVSEARNFIDGDLVESFLDLPKPQMMKVVDKLNSDGM 1125
BLAST of EWM25595.1 vs. NCBI_GenBank
Match: gi|570961222|gb|ETP26201.1| (hypothetical protein F441_01020 [Phytophthora parasitica CJ01A1]) HSP 1 Score: 99.3673 bits (246), Expect = 1.001e-20 Identity = 43/95 (45.26%), Postives = 70/95 (73.68%), Query Frame = 0
Query: 39 VQDLGLMFGTQQGMIGSILPISEEDYRFFVALTKCLNKVVKGVGGLSHEEYRRFLTDKAISDTQGFVDGDLIESFLELPTQRMEEVVELMRVEGV 133
VQ+ ++FGT GMIG ILPI+++ Y F + + + L +VVKGVGG SH+++R F +++S+ + F+DGDL+ESFL+LP +M +VV+ + +G+
Sbjct: 1031 VQNQSMLFGTVSGMIGVILPITKDQYAFLLRVQQALTQVVKGVGGFSHKDWRTFENRRSVSEARNFIDGDLVESFLDLPKPQMMKVVDKLNSDGM 1125
BLAST of EWM25595.1 vs. NCBI_GenBank
Match: gi|567971162|gb|ETK96175.1| (hypothetical protein L915_00983 [Phytophthora parasitica] >gi|570337191|gb|ETO85139.1| hypothetical protein F444_01050 [Phytophthora parasitica P1976]) HSP 1 Score: 99.3673 bits (246), Expect = 1.001e-20 Identity = 43/95 (45.26%), Postives = 70/95 (73.68%), Query Frame = 0
Query: 39 VQDLGLMFGTQQGMIGSILPISEEDYRFFVALTKCLNKVVKGVGGLSHEEYRRFLTDKAISDTQGFVDGDLIESFLELPTQRMEEVVELMRVEGV 133
VQ+ ++FGT GMIG ILPI+++ Y F + + + L +VVKGVGG SH+++R F +++S+ + F+DGDL+ESFL+LP +M +VV+ + +G+
Sbjct: 1031 VQNQSMLFGTVSGMIGVILPITKDQYAFLLRVQQALTQVVKGVGGFSHKDWRTFENRRSVSEARNFIDGDLVESFLDLPKPQMMKVVDKLNSDGM 1125 The following BLAST results are available for this feature:
BLAST of EWM25595.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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