EWM25595.1, cds5077 (CDS) Nannochloropsis gaditana

Overview
NameEWM25595.1
Unique Namecds5077
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002465.1:95370..95597 +
Alignment locationCM002465.1:95842..96192 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM25595.1
Productuv-damaged response dna-binding protein
Orig transcript idgnl|cribi|Naga_100813g5.3596.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002465.1supercontigCM002465.1:95370..95597 +
CM002465.1supercontigCM002465.1:95842..96192 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0006950response to stress
GO:0006259DNA metabolic process
GO:0009056catabolic process
GO:0019538protein metabolic process
Vocabulary: Molecular Function
TermDefinition
GO:0003677DNA binding
GO:0003676nucleic acid binding
Vocabulary: Cellular Component
TermDefinition
GO:0005634nucleus
Vocabulary: INTERPRO
TermDefinition
IPR004871Cleavage/polyA-sp_fac_asu_C
Homology
BLAST of EWM25595.1 vs. NCBI_GenBank
Match: gi|553189148|ref|XP_005854942.1| (uv-damaged dna-binding protein [Nannochloropsis gaditana CCMP526] >gi|422294117|gb|EKU21417.1| uv-damaged dna-binding protein [Nannochloropsis gaditana CCMP526] >gi|585107391|gb|EWM25595.1| uv-damaged response dna-binding protein [Nannochloropsis gaditana])

HSP 1 Score: 378.637 bits (971), Expect = 9.108e-133
Identity = 192/192 (100.00%), Postives = 192/192 (100.00%), Query Frame = 0
Query:    1 MAGTENPLGGEKGEEKDEKVGDKEKEGRRSGGEVARGHVQDLGLMFGTQQGMIGSILPISEEDYRFFVALTKCLNKVVKGVGGLSHEEYRRFLTDKAISDTQGFVDGDLIESFLELPTQRMEEVVELMRVEGVGGESKTDAALCDQAGGGKGEGKMEVVGLQEHAGKEEEKKDGVLSLDEVYRRVEDMTRLH 192
            MAGTENPLGGEKGEEKDEKVGDKEKEGRRSGGEVARGHVQDLGLMFGTQQGMIGSILPISEEDYRFFVALTKCLNKVVKGVGGLSHEEYRRFLTDKAISDTQGFVDGDLIESFLELPTQRMEEVVELMRVEGVGGESKTDAALCDQAGGGKGEGKMEVVGLQEHAGKEEEKKDGVLSLDEVYRRVEDMTRLH
Sbjct:    1 MAGTENPLGGEKGEEKDEKVGDKEKEGRRSGGEVARGHVQDLGLMFGTQQGMIGSILPISEEDYRFFVALTKCLNKVVKGVGGLSHEEYRRFLTDKAISDTQGFVDGDLIESFLELPTQRMEEVVELMRVEGVGGESKTDAALCDQAGGGKGEGKMEVVGLQEHAGKEEEKKDGVLSLDEVYRRVEDMTRLH 192          
BLAST of EWM25595.1 vs. NCBI_GenBank
Match: gi|301121252|ref|XP_002908353.1| (DNA damage-binding protein, putative [Phytophthora infestans T30-4] >gi|262103384|gb|EEY61436.1| DNA damage-binding protein, putative [Phytophthora infestans T30-4])

HSP 1 Score: 100.908 bits (250), Expect = 2.231e-21
Identity = 44/95 (46.32%), Postives = 69/95 (72.63%), Query Frame = 0
Query:   39 VQDLGLMFGTQQGMIGSILPISEEDYRFFVALTKCLNKVVKGVGGLSHEEYRRFLTDKAISDTQGFVDGDLIESFLELPTQRMEEVVELMRVEGV 133
            VQ+  ++FGT  GMIG ILPIS++ Y F + + + L  VVKGVGG SH+++R F   +++S+ + F+DGDL+ESFL+LP  +M +VV+ +  +G+
Sbjct: 1033 VQNQSMLFGTVSGMIGVILPISKDQYSFLLRVQQALTHVVKGVGGFSHKDWRTFENRRSVSEARNFIDGDLVESFLDLPKPQMTKVVDKLNSDGM 1127          
BLAST of EWM25595.1 vs. NCBI_GenBank
Match: gi|970660322|gb|KUF97882.1| (hypothetical protein AM588_10010651 [Phytophthora nicotianae])

HSP 1 Score: 99.7525 bits (247), Expect = 6.030e-21
Identity = 43/95 (45.26%), Postives = 70/95 (73.68%), Query Frame = 0
Query:   39 VQDLGLMFGTQQGMIGSILPISEEDYRFFVALTKCLNKVVKGVGGLSHEEYRRFLTDKAISDTQGFVDGDLIESFLELPTQRMEEVVELMRVEGV 133
            VQ+  ++FGT  GMIG ILPI+++ Y F + + + L +VVKGVGG SH+++R F   +++S+ + F+DGDL+ESFL+LP  +M +VV+ +  +G+
Sbjct:  901 VQNQSMLFGTVSGMIGVILPITKDQYAFLLRVQQALTQVVKGVGGFSHKDWRTFENRRSVSEARNFIDGDLVESFLDLPKPQMMKVVDKLNSDGM 995          
BLAST of EWM25595.1 vs. NCBI_GenBank
Match: gi|586646685|ref|XP_006828193.1| (DNA damage-binding protein 1 [Amborella trichopoda] >gi|548832840|gb|ERM95609.1| hypothetical protein AMTR_s00023p00145060 [Amborella trichopoda])

HSP 1 Score: 99.7525 bits (247), Expect = 6.637e-21
Identity = 46/87 (52.87%), Postives = 62/87 (71.26%), Query Frame = 0
Query:   44 LMFGTQQGMIGSILPISEEDYRFFVALTKCLNKVVKGVGGLSHEEYRRFLTDKAISDTQGFVDGDLIESFLELPTQRMEEVVELMRV 130
            ++FGT  G IG +  +S+  ++FF  L  CL KV+KGVGGLSHE++R F  +K  +D +GF+DGDLIESFL+L   RMEE+   MRV
Sbjct:  987 VIFGTVNGAIGIVASLSQHQFKFFEKLQGCLVKVIKGVGGLSHEQWRSFNNEKKTADARGFLDGDLIESFLDLSRARMEEISTAMRV 1073          
BLAST of EWM25595.1 vs. NCBI_GenBank
Match: gi|570997892|gb|ETP54184.1| (hypothetical protein F442_00994 [Phytophthora parasitica P10297])

HSP 1 Score: 99.3673 bits (246), Expect = 9.914e-21
Identity = 43/95 (45.26%), Postives = 70/95 (73.68%), Query Frame = 0
Query:   39 VQDLGLMFGTQQGMIGSILPISEEDYRFFVALTKCLNKVVKGVGGLSHEEYRRFLTDKAISDTQGFVDGDLIESFLELPTQRMEEVVELMRVEGV 133
            VQ+  ++FGT  GMIG ILPI+++ Y F + + + L +VVKGVGG SH+++R F   +++S+ + F+DGDL+ESFL+LP  +M +VV+ +  +G+
Sbjct: 1031 VQNQSMLFGTVSGMIGVILPITKDQYAFLLRVQQALTQVVKGVGGFSHKDWRTFENRRSVSEARNFIDGDLVESFLDLPKPQMMKVVDKLNSDGM 1125          
BLAST of EWM25595.1 vs. NCBI_GenBank
Match: gi|675163645|ref|XP_008890707.1| (hypothetical protein PPTG_00887 [Phytophthora parasitica INRA-310] >gi|568110053|gb|ETN24660.1| hypothetical protein PPTG_00887 [Phytophthora parasitica INRA-310])

HSP 1 Score: 99.3673 bits (246), Expect = 9.914e-21
Identity = 43/95 (45.26%), Postives = 70/95 (73.68%), Query Frame = 0
Query:   39 VQDLGLMFGTQQGMIGSILPISEEDYRFFVALTKCLNKVVKGVGGLSHEEYRRFLTDKAISDTQGFVDGDLIESFLELPTQRMEEVVELMRVEGV 133
            VQ+  ++FGT  GMIG ILPI+++ Y F + + + L +VVKGVGG SH+++R F   +++S+ + F+DGDL+ESFL+LP  +M +VV+ +  +G+
Sbjct: 1031 VQNQSMLFGTVSGMIGVILPITKDQYAFLLRVQQALTQVVKGVGGFSHKDWRTFENRRSVSEARNFIDGDLVESFLDLPKPQMMKVVDKLNSDGM 1125          
BLAST of EWM25595.1 vs. NCBI_GenBank
Match: gi|567999509|gb|ETL49547.1| (hypothetical protein L916_00970 [Phytophthora parasitica])

HSP 1 Score: 99.3673 bits (246), Expect = 9.914e-21
Identity = 43/95 (45.26%), Postives = 70/95 (73.68%), Query Frame = 0
Query:   39 VQDLGLMFGTQQGMIGSILPISEEDYRFFVALTKCLNKVVKGVGGLSHEEYRRFLTDKAISDTQGFVDGDLIESFLELPTQRMEEVVELMRVEGV 133
            VQ+  ++FGT  GMIG ILPI+++ Y F + + + L +VVKGVGG SH+++R F   +++S+ + F+DGDL+ESFL+LP  +M +VV+ +  +G+
Sbjct: 1031 VQNQSMLFGTVSGMIGVILPITKDQYAFLLRVQQALTQVVKGVGGFSHKDWRTFENRRSVSEARNFIDGDLVESFLDLPKPQMMKVVDKLNSDGM 1125          
BLAST of EWM25595.1 vs. NCBI_GenBank
Match: gi|566033493|gb|ETI56404.1| (hypothetical protein F443_01047 [Phytophthora parasitica P1569] >gi|568028674|gb|ETM02612.1| hypothetical protein L917_00938 [Phytophthora parasitica] >gi|568059286|gb|ETM55862.1| hypothetical protein L914_00977 [Phytophthora parasitica])

HSP 1 Score: 99.3673 bits (246), Expect = 9.914e-21
Identity = 43/95 (45.26%), Postives = 70/95 (73.68%), Query Frame = 0
Query:   39 VQDLGLMFGTQQGMIGSILPISEEDYRFFVALTKCLNKVVKGVGGLSHEEYRRFLTDKAISDTQGFVDGDLIESFLELPTQRMEEVVELMRVEGV 133
            VQ+  ++FGT  GMIG ILPI+++ Y F + + + L +VVKGVGG SH+++R F   +++S+ + F+DGDL+ESFL+LP  +M +VV+ +  +G+
Sbjct: 1031 VQNQSMLFGTVSGMIGVILPITKDQYAFLLRVQQALTQVVKGVGGFSHKDWRTFENRRSVSEARNFIDGDLVESFLDLPKPQMMKVVDKLNSDGM 1125          
BLAST of EWM25595.1 vs. NCBI_GenBank
Match: gi|570961222|gb|ETP26201.1| (hypothetical protein F441_01020 [Phytophthora parasitica CJ01A1])

HSP 1 Score: 99.3673 bits (246), Expect = 1.001e-20
Identity = 43/95 (45.26%), Postives = 70/95 (73.68%), Query Frame = 0
Query:   39 VQDLGLMFGTQQGMIGSILPISEEDYRFFVALTKCLNKVVKGVGGLSHEEYRRFLTDKAISDTQGFVDGDLIESFLELPTQRMEEVVELMRVEGV 133
            VQ+  ++FGT  GMIG ILPI+++ Y F + + + L +VVKGVGG SH+++R F   +++S+ + F+DGDL+ESFL+LP  +M +VV+ +  +G+
Sbjct: 1031 VQNQSMLFGTVSGMIGVILPITKDQYAFLLRVQQALTQVVKGVGGFSHKDWRTFENRRSVSEARNFIDGDLVESFLDLPKPQMMKVVDKLNSDGM 1125          
BLAST of EWM25595.1 vs. NCBI_GenBank
Match: gi|567971162|gb|ETK96175.1| (hypothetical protein L915_00983 [Phytophthora parasitica] >gi|570337191|gb|ETO85139.1| hypothetical protein F444_01050 [Phytophthora parasitica P1976])

HSP 1 Score: 99.3673 bits (246), Expect = 1.001e-20
Identity = 43/95 (45.26%), Postives = 70/95 (73.68%), Query Frame = 0
Query:   39 VQDLGLMFGTQQGMIGSILPISEEDYRFFVALTKCLNKVVKGVGGLSHEEYRRFLTDKAISDTQGFVDGDLIESFLELPTQRMEEVVELMRVEGV 133
            VQ+  ++FGT  GMIG ILPI+++ Y F + + + L +VVKGVGG SH+++R F   +++S+ + F+DGDL+ESFL+LP  +M +VV+ +  +G+
Sbjct: 1031 VQNQSMLFGTVSGMIGVILPITKDQYAFLLRVQQALTQVVKGVGGFSHKDWRTFENRRSVSEARNFIDGDLVESFLDLPKPQMMKVVDKLNSDGM 1125          
The following BLAST results are available for this feature:
BLAST of EWM25595.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|553189148|ref|XP_005854942.1|9.108e-133100.00uv-damaged dna-binding protein [Nannochloropsis ga... [more]
gi|301121252|ref|XP_002908353.1|2.231e-2146.32DNA damage-binding protein, putative [Phytophthora... [more]
gi|970660322|gb|KUF97882.1|6.030e-2145.26hypothetical protein AM588_10010651 [Phytophthora ... [more]
gi|586646685|ref|XP_006828193.1|6.637e-2152.87DNA damage-binding protein 1 [Amborella trichopoda... [more]
gi|570997892|gb|ETP54184.1|9.914e-2145.26hypothetical protein F442_00994 [Phytophthora para... [more]
gi|675163645|ref|XP_008890707.1|9.914e-2145.26hypothetical protein PPTG_00887 [Phytophthora para... [more]
gi|567999509|gb|ETL49547.1|9.914e-2145.26hypothetical protein L916_00970 [Phytophthora para... [more]
gi|566033493|gb|ETI56404.1|9.914e-2145.26hypothetical protein F443_01047 [Phytophthora para... [more]
gi|570961222|gb|ETP26201.1|1.001e-2045.26hypothetical protein F441_01020 [Phytophthora para... [more]
gi|567971162|gb|ETK96175.1|1.001e-2045.26hypothetical protein L915_00983 [Phytophthora para... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna5089rna5089Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications