rna5088, rna5088 (mRNA) Nannochloropsis gaditana

Overview
Namerna5088
Unique Namerna5088
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length282
Alignment locationCM002465.1:91633..92570 +

Link to JBrowse

Properties
Property NameValue
Productdna damage-binding protein
Orig transcript idgnl|cribi|Naga_101250g1.2590.mrna
Orig protein idgnl|cribi|Naga_101250g1.2590
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002465.1supercontigCM002465.1:91633..92570 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_101250g1gene4913Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna5088rna5088-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM25597.1cds5076Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna5088 ID=rna5088|Name=rna5088|organism=Nannochloropsis gaditana|type=mRNA|length=282bp
ATGTATCCTGAGGTGGAACTTCTCTTTACCACCCACAAACATTCCTCCCT
TTCCTCGTCATCCCCAGTACCCCCGGGTATTCGCGTGATAGACATCCATC
CTTGTGAGACCCGGGTGGCGGTAGTGGATGAGGCGGGAACCCTCTTTGTG
TGGGATTTCGCAACCTCCTCTCTCCTCCTCCGCCTCCCCCTGGCCCCAGC
CCACGATGCAGCCTGGCCCTTCCAAGTCCATGCCGATGGACGTGGGGGAG
GAGGAAGGCTTGGACGCAAAAGAGGGGGATAG
back to top

protein sequence of rna5088

>rna5088-protein ID=rna5088-protein|Name=rna5088|organism=Nannochloropsis gaditana|type=polypeptide|length=118bp
MAYNYVVTNQKPTTVTHALTASFTSPDALNLLLIRNTRLEVHEMGPEGLV
PVGGRFEGGKGVDRTERKGEACPGRAHLRAGQHGLHFKAGQRASRRRFPV
NGTVPVLPLGLRCSPGRD
back to top

mRNA from alignment at CM002465.1:91633..92570+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna5088 ID=rna5088|Name=rna5088|organism=Nannochloropsis gaditana|type=mRNA|length=938bp|location=Sequence derived from alignment at CM002465.1:91633..92570+ (Nannochloropsis gaditana)
ATGGCGTACAACTATGTGGTCACGAATCAGAAACCGACCACAGTCACACA
CGCCCTCACTgcttccttcacctctccCGATGCGTTAAACCTGTTGCTCA
TCCGGAACACGCGTTTGGAGGTGCATGAAATGGGGCCAGAAGGACTCGTA
CCGGTAGGAGGACGgtttgaaggagggaaaggcgttGATCgaacggagag
gaagggcgaggcaTGTTAAGGAGGCATCCAGTATGGCTTAATGTACCGAA
ATAATGTTTGCTTTAGTCCTGATAGTGGTTTCGGCTTCTATGTCTAAGGG
CTAtgctggaagggggagcgTGGGATATATTATAGAAGGGGGTCTTTCTC
GTCGTAGAAATCGTGGGTGTAGTAGGGGAACTCGAGGGCTATTTGAATCT
CTTGGTTACAGCGTCATTCTGTCCTCGGTTTCCTCAATCCTGAcaccttt
cctcctccataaTGTCCCTCTCGTCTCCacgttcctcttctctcctcttt
tcccacctccttcccccgctcccacccttctttcctcccttctcctcctc
tttttttcgtcctcgccctctcaaCCCATGGCTCTTCCTATCAGGTCCTG
GACGTGCGCATTTACGGGCGGGTCAGCACGGCCTGCATTTTAAAGCTGGC
CAACGAGCCTCAAGACGTCGTTTTCCTGTCAACGGAACGGTGGGTGCAcg
cgaggcggaagagggaggaatccTGGGCCCTGGCGCTGGGGGAGCGaggt
cgaaggagggcgtggagagtCTACAATGAAGCcccgcgggggagggatgc
aTGTGTCCGGCAAGGGTCCCTCCCTGTCGACGGCAGGCATCCATCCCTCA
CCGACACCACGCCCTGGATTCCCTTTTCACTAATTGGCAGGTACCAGTAC
TCCCTCTTGGTCTACGATGCAGCCCGGGGCGAGATTAA
back to top

Coding sequence (CDS) from alignment at CM002465.1:91633..92570+

>rna5088 ID=rna5088|Name=rna5088|organism=Nannochloropsis gaditana|type=CDS|length=1071bp|location=Sequence derived from alignment at CM002465.1:91633..92570+ (Nannochloropsis gaditana)
ATGGCGTACAACTATGTGGTCACGAATCAGAAACCGACCACAGTCACACA
CGCCCTCACTgcttccttcacctctccCGATGCGTTAAACCTGTTGCTCA
TCCGGAACACGCGTTTGGAGGTGCATGAAATGGGGCCAGAAGGACTCGTA
CCGGTAGGAGGACGgtttgaaggagggaaaggcgttGATCgaacggagag
gaagggcgaggcaTGTCCTGGACGTGCGCATTTACGGGCGGGTCAGCACG
GCCTGCATTTTAAAGCTGGCCAACGAGCCTCAAGACGTCGTTTTCCTGTC
AACGGAACGGTACCAGTACTCCCTCTTGGTCTACGATGCAGCCCGGGGCG
AGATTAAATGGCGTACAACTATGTGGTCACGAATCAGAAACCGACCACAG
TCACACACGCCCTCACTgcttccttcacctctccCGATGCGTTAAACCTG
TTGCTCATCCGGAACACGCGTTTGGAGGTGCATGAAATGGGGCCAGAAGG
ACTCGTACCGGTAGGAGGACGgtttgaaggagggaaaggcgttGATCgaa
cggagaggaagggcgaggcaTGTCCTGGACGTGCGCATTTACGGGCGGGT
CAGCACGGCCTGCATTTTAAAGCTGGCCAACGAGCCTCAAGACGTCGTTT
TCCTGTCAACGGAACGGTACCAGTACTCCCTCTTGGTCTACGATGCAGCC
CGGGGCGAGATTAAATGGCGTACAACTATGTGGTCACGAATCAGAAACCG
ACCACAGTCACACACGCCCTCACTgcttccttcacctctccCGATGCGTT
AAACCTGTTGCTCATCCGGAACACGCGTTTGGAGGTGCATGAAATGGGGC
CAGAAGGACTCGTACCGGTAGGAGGACGgtttgaaggagggaaaggcgtt
GATCgaacggagaggaagggcgaggcaTGTCCTGGACGTGCGCATTTACG
GGCGGGTCAGCACGGCCTGCATTTTAAAGCTGGCCAACGAGCCTCAAGAC
GTCGTTTTCCTGTCAACGGAACGGTACCAGTACTCCCTCTTGGTCTACGA
TGCAGCCCGGGGCGAGATTAA
back to top
Synonyms
Publications