EWM25597.1, cds5076 (CDS) Nannochloropsis gaditana

Overview
NameEWM25597.1
Unique Namecds5076
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002465.1:91633..91846 +
Alignment locationCM002465.1:92227..92321 +
Alignment locationCM002465.1:92523..92570 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM25597.1
Productdna damage-binding protein
Orig transcript idgnl|cribi|Naga_101250g1.2590.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002465.1supercontigCM002465.1:91633..91846 +
CM002465.1supercontigCM002465.1:92227..92321 +
CM002465.1supercontigCM002465.1:92523..92570 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0006950response to stress
GO:0006259DNA metabolic process
Vocabulary: Cellular Component
TermDefinition
GO:0005634nucleus
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
Homology
[Close]
BLAST of EWM25597.1 vs. NCBI_GenBank
Match: gi|585107396|gb|EWM25597.1| (dna damage-binding protein [Nannochloropsis gaditana])

HSP 1 Score: 241.121 bits (614), Expect = 1.224e-80
Identity = 118/118 (100.00%), Postives = 118/118 (100.00%), Query Frame = 0 
Query:    1 MAYNYVVTNQKPTTVTHALTASFTSPDALNLLLIRNTRLEVHEMGPEGLVPVGGRFEGGKGVDRTERKGEACPGRAHLRAGQHGLHFKAGQRASRRRFPVNGTVPVLPLGLRCSPGRD 118
            MAYNYVVTNQKPTTVTHALTASFTSPDALNLLLIRNTRLEVHEMGPEGLVPVGGRFEGGKGVDRTERKGEACPGRAHLRAGQHGLHFKAGQRASRRRFPVNGTVPVLPLGLRCSPGRD
Sbjct:    1 MAYNYVVTNQKPTTVTHALTASFTSPDALNLLLIRNTRLEVHEMGPEGLVPVGGRFEGGKGVDRTERKGEACPGRAHLRAGQHGLHFKAGQRASRRRFPVNGTVPVLPLGLRCSPGRD 118
[Close]
BLAST of EWM25597.1 vs. NCBI_GenBank
Match: gi|695404816|ref|XP_009523625.1| (hypothetical protein PHYSODRAFT_259403 [Phytophthora sojae] >gi|348681092|gb|EGZ20908.1| hypothetical protein PHYSODRAFT_259403 [Phytophthora sojae])

HSP 1 Score: 77.7962 bits (190), Expect = 2.255e-14
Identity = 34/51 (66.67%), Postives = 41/51 (80.39%), Query Frame = 0 
Query:    1 MAYNYVVTNQKPTTVTHALTASFTSPDALNLLLIRNTRLEVHEMGPEGLVP 51
            MAYNYV T QKPT+VTH+LTA+FT P+  NLLL ++TR EVH + PEGL P
Sbjct:    1 MAYNYVATAQKPTSVTHSLTAAFTGPNDTNLLLAKSTRFEVHLLTPEGLSP 51
[Close]
BLAST of EWM25597.1 vs. NCBI_GenBank
Match: gi|1214689300|gb|OWZ04928.1| (DNA damage-binding protein [Phytophthora megakarya])

HSP 1 Score: 77.7962 bits (190), Expect = 2.708e-14
Identity = 34/51 (66.67%), Postives = 41/51 (80.39%), Query Frame = 0 
Query:    1 MAYNYVVTNQKPTTVTHALTASFTSPDALNLLLIRNTRLEVHEMGPEGLVP 51
            MAYNYV T QKPT+VTH+LTA+FT P+  NLLL ++TR EVH + PEGL P
Sbjct:    1 MAYNYVATAQKPTSVTHSLTAAFTGPNDTNLLLAKSTRFEVHLLTPEGLQP 51
[Close]
BLAST of EWM25597.1 vs. NCBI_GenBank
Match: gi|970638886|gb|KUF82205.1| (DNA damage-binding protein 1a [Phytophthora nicotianae])

HSP 1 Score: 74.3294 bits (181), Expect = 4.360e-13
Identity = 33/51 (64.71%), Postives = 40/51 (78.43%), Query Frame = 0 
Query:    1 MAYNYVVTNQKPTTVTHALTASFTSPDALNLLLIRNTRLEVHEMGPEGLVP 51
            MAYNYV T QKPT+VTH+LTA+FT  +  NLLL ++TR EVH + PEGL P
Sbjct:    1 MAYNYVATAQKPTSVTHSLTAAFTGANDTNLLLAKSTRFEVHLLTPEGLQP 51
[Close]
BLAST of EWM25597.1 vs. NCBI_GenBank
Match: gi|570997892|gb|ETP54184.1| (hypothetical protein F442_00994 [Phytophthora parasitica P10297])

HSP 1 Score: 74.3294 bits (181), Expect = 4.360e-13
Identity = 33/51 (64.71%), Postives = 40/51 (78.43%), Query Frame = 0 
Query:    1 MAYNYVVTNQKPTTVTHALTASFTSPDALNLLLIRNTRLEVHEMGPEGLVP 51
            MAYNYV T QKPT+VTH+LTA+FT  +  NLLL ++TR EVH + PEGL P
Sbjct:    1 MAYNYVATAQKPTSVTHSLTAAFTGANDTNLLLAKSTRFEVHLLTPEGLQP 51
[Close]
BLAST of EWM25597.1 vs. NCBI_GenBank
Match: gi|570961222|gb|ETP26201.1| (hypothetical protein F441_01020 [Phytophthora parasitica CJ01A1])

HSP 1 Score: 74.3294 bits (181), Expect = 4.360e-13
Identity = 33/51 (64.71%), Postives = 40/51 (78.43%), Query Frame = 0 
Query:    1 MAYNYVVTNQKPTTVTHALTASFTSPDALNLLLIRNTRLEVHEMGPEGLVP 51
            MAYNYV T QKPT+VTH+LTA+FT  +  NLLL ++TR EVH + PEGL P
Sbjct:    1 MAYNYVATAQKPTSVTHSLTAAFTGANDTNLLLAKSTRFEVHLLTPEGLQP 51
[Close]
BLAST of EWM25597.1 vs. NCBI_GenBank
Match: gi|675163645|ref|XP_008890707.1| (hypothetical protein PPTG_00887 [Phytophthora parasitica INRA-310] >gi|568110053|gb|ETN24660.1| hypothetical protein PPTG_00887 [Phytophthora parasitica INRA-310])

HSP 1 Score: 74.3294 bits (181), Expect = 4.360e-13
Identity = 33/51 (64.71%), Postives = 40/51 (78.43%), Query Frame = 0 
Query:    1 MAYNYVVTNQKPTTVTHALTASFTSPDALNLLLIRNTRLEVHEMGPEGLVP 51
            MAYNYV T QKPT+VTH+LTA+FT  +  NLLL ++TR EVH + PEGL P
Sbjct:    1 MAYNYVATAQKPTSVTHSLTAAFTGANDTNLLLAKSTRFEVHLLTPEGLQP 51
[Close]
BLAST of EWM25597.1 vs. NCBI_GenBank
Match: gi|567999509|gb|ETL49547.1| (hypothetical protein L916_00970 [Phytophthora parasitica])

HSP 1 Score: 74.3294 bits (181), Expect = 4.360e-13
Identity = 33/51 (64.71%), Postives = 40/51 (78.43%), Query Frame = 0 
Query:    1 MAYNYVVTNQKPTTVTHALTASFTSPDALNLLLIRNTRLEVHEMGPEGLVP 51
            MAYNYV T QKPT+VTH+LTA+FT  +  NLLL ++TR EVH + PEGL P
Sbjct:    1 MAYNYVATAQKPTSVTHSLTAAFTGANDTNLLLAKSTRFEVHLLTPEGLQP 51
[Close]
BLAST of EWM25597.1 vs. NCBI_GenBank
Match: gi|567971162|gb|ETK96175.1| (hypothetical protein L915_00983 [Phytophthora parasitica] >gi|570337191|gb|ETO85139.1| hypothetical protein F444_01050 [Phytophthora parasitica P1976])

HSP 1 Score: 74.3294 bits (181), Expect = 4.360e-13
Identity = 33/51 (64.71%), Postives = 40/51 (78.43%), Query Frame = 0 
Query:    1 MAYNYVVTNQKPTTVTHALTASFTSPDALNLLLIRNTRLEVHEMGPEGLVP 51
            MAYNYV T QKPT+VTH+LTA+FT  +  NLLL ++TR EVH + PEGL P
Sbjct:    1 MAYNYVATAQKPTSVTHSLTAAFTGANDTNLLLAKSTRFEVHLLTPEGLQP 51
[Close]
BLAST of EWM25597.1 vs. NCBI_GenBank
Match: gi|566033493|gb|ETI56404.1| (hypothetical protein F443_01047 [Phytophthora parasitica P1569] >gi|568028674|gb|ETM02612.1| hypothetical protein L917_00938 [Phytophthora parasitica] >gi|568059286|gb|ETM55862.1| hypothetical protein L914_00977 [Phytophthora parasitica])

HSP 1 Score: 74.3294 bits (181), Expect = 4.360e-13
Identity = 33/51 (64.71%), Postives = 40/51 (78.43%), Query Frame = 0 
Query:    1 MAYNYVVTNQKPTTVTHALTASFTSPDALNLLLIRNTRLEVHEMGPEGLVP 51
            MAYNYV T QKPT+VTH+LTA+FT  +  NLLL ++TR EVH + PEGL P
Sbjct:    1 MAYNYVATAQKPTSVTHSLTAAFTGANDTNLLLAKSTRFEVHLLTPEGLQP 51
The following BLAST results are available for this feature:
BLAST of EWM25597.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585107396|gb|EWM25597.1|1.224e-80100.00dna damage-binding protein [Nannochloropsis gadita... [more]
gi|695404816|ref|XP_009523625.1|2.255e-1466.67hypothetical protein PHYSODRAFT_259403 [Phytophtho... [more]
gi|1214689300|gb|OWZ04928.1|2.708e-1466.67DNA damage-binding protein [Phytophthora megakarya... [more]
gi|970638886|gb|KUF82205.1|4.360e-1364.71DNA damage-binding protein 1a [Phytophthora nicoti... [more]
gi|570997892|gb|ETP54184.1|4.360e-1364.71hypothetical protein F442_00994 [Phytophthora para... [more]
gi|570961222|gb|ETP26201.1|4.360e-1364.71hypothetical protein F441_01020 [Phytophthora para... [more]
gi|675163645|ref|XP_008890707.1|4.360e-1364.71hypothetical protein PPTG_00887 [Phytophthora para... [more]
gi|567999509|gb|ETL49547.1|4.360e-1364.71hypothetical protein L916_00970 [Phytophthora para... [more]
gi|567971162|gb|ETK96175.1|4.360e-1364.71hypothetical protein L915_00983 [Phytophthora para... [more]
gi|566033493|gb|ETI56404.1|4.360e-1364.71hypothetical protein F443_01047 [Phytophthora para... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna5088rna5088Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications