rna5087, rna5087 (mRNA) Nannochloropsis gaditana

Overview
Namerna5087
Unique Namerna5087
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length715
Alignment locationCM002465.1:90164..90895 -

Link to JBrowse

Properties
Property NameValue
ProductWD40/YVTN repeat-like-containing domain protein
Orig transcript idgnl|cribi|Naga_101250g2.2591.mrna
Orig protein idgnl|cribi|Naga_101250g2.2591
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002465.1supercontigCM002465.1:90164..90895 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_101250g2gene4912Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna5087rna5087-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM25598.1cds5075Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna5087 ID=rna5087|Name=rna5087|organism=Nannochloropsis gaditana|type=mRNA|length=715bp
GGCCTGAAAATCACCCTCTGTCACTCTCTCCCTCCCGCCCTCCTTCCCTC
CCTCCCGCCCTCCCCAGGCCATGGATCCTTTTTTGCACGATGCTGCCATC
CTTCAACTGTGTGAACCTCGAGGAGCCTCTGCGGTGGACGCGGCGATCGC
CTTCATGCCCGGCGTATCTTTGGCCCTCGCCATCGACCTCTGCATCCGCC
ACTCTCTCGTTTCCCGCCTGGAGCGCCTCCTTTTCCCCTCCCTTCCCTCC
TCTTCTCCCTCCTTCTCCTCCTCTTTCCCCCCGGAGACGGAAGCCACGGT
CCTTGCGCGGACGCTGTCGCTTCTCCTTCAGCTCGACGACTCCTTCTCCA
CGGATCCTCAGGGTCTTGCCTCTCTGGCCTGTGTGCACGGAACAGAGACA
TCTGCAGCAGACGCATACTATCCTCCGCCCCCCTCCCATCCCTGCTCGGC
CATCCGACGGGTGGGACTCTTCTTTGCACAGCACGGCCGGGAGGAAGAGG
CATTTTTCCTCTCCCTCCTTCTCCGCGATCCGAAGTTGACCATCGAAATA
GCATTGGCCGCAGGACGGCCCGAGGCAGCAGCAGCTGTGGTAGCGGGAAG
GCAGGAAAGGGAGGAAGGGGGGGAGGAGGAGGAGGAGAGGGTTGTTAGGG
CGTGGAATGAGTTTTTACAGGAGCAAGGGAGCGAGGTCAGGATCAATGGA
CGCCGAAACCCTTGA
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protein sequence of rna5087

>rna5087-protein ID=rna5087-protein|Name=rna5087|organism=Nannochloropsis gaditana|type=polypeptide|length=93bp
MYPEVELLFTTHKHSSLSSSSPVPPGIRVIDIHPCETRVAVVDEAGTLFV
WDFATSSLLLRLPLAPAHDAAWPFQVHADGRGGGGRLGRKRGG
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mRNA from alignment at CM002465.1:90164..90895-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna5087 ID=rna5087|Name=rna5087|organism=Nannochloropsis gaditana|type=mRNA|length=732bp|location=Sequence derived from alignment at CM002465.1:90164..90895- (Nannochloropsis gaditana)
ATGTATCCTGAGGTGGAACTTCTCTTTACCACCCACAAACATTCCTCCCT
TTCCTCGTCATCCCCAGTACCCCCGGTATGTGGTCGATGCACTTTTCATT
TTGCCATGGAAATCAAAGAAGACACGAAGGGTTTTATTCTTTTTAGCTAG
CACTAATTGTGGACAATCTGGCCTTTTCACATATCCCGTATACCTGGACA
CAGGGTATTCGCGTGATAGACATCCATCCTTGTGAGACCCGGGTGGCGGT
AGTGGATGAGGTACGTGTATGATAAATGCAGTCCGCACTTTCCATTTGAT
GATTGTTAATGAGAGGGATAAAAGAAGGGAAAGGATGAATGAAACCAGGG
AAACAAGAATTATCTCTTGAGTTCAAATCTGGGGGAAGCAGGATATACGA
AGAAGAGGAGGGGCAGGAGGGAGGGGCAGGGACGACGCGAGTGGATCACT
CCATCCACGCCGTGAGCTGCTGATAGGTATTGGCTCCCAAAAAAAGAAGT
GCAAAAATTGACGCATTTCTCTCACTCCCTTCCAGGCGGGAACCCTCTTT
GTGTGGGATTTCGCAACCTCCTCTCTCCTCCTCCGCCTCCCCCTGGCCCC
AGCCCACGATGCAGCCTGGCGTTTCGACCGCTTGTATCCGACCCTATCCC
TCTCGTCCGCCTCAAAGCCTTCCAAGTCCATGCCGATGGACGTGGGGGAG
GAGGAAGGCTTGGACGCAAAAGAGGGGGATAG
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Coding sequence (CDS) from alignment at CM002465.1:90164..90895-

>rna5087 ID=rna5087|Name=rna5087|organism=Nannochloropsis gaditana|type=CDS|length=1128bp|location=Sequence derived from alignment at CM002465.1:90164..90895- (Nannochloropsis gaditana)
CCTTCCAAGTCCATGCCGATGGACGTGGGGGAGGAGGAAGGCTTGGACGC
AAAAGAGGGGGATAGGCGGGAACCCTCTTTGTGTGGGATTTCGCAACCTC
CTCTCTCCTCCTCCGCCTCCCCCTGGCCCCAGCCCACGATGCAGCCTGGC
GGTATTCGCGTGATAGACATCCATCCTTGTGAGACCCGGGTGGCGGTAGT
GGATGAGATGTATCCTGAGGTGGAACTTCTCTTTACCACCCACAAACATT
CCTCCCTTTCCTCGTCATCCCCAGTACCCCCGCCTTCCAAGTCCATGCCG
ATGGACGTGGGGGAGGAGGAAGGCTTGGACGCAAAAGAGGGGGATAGGCG
GGAACCCTCTTTGTGTGGGATTTCGCAACCTCCTCTCTCCTCCTCCGCCT
CCCCCTGGCCCCAGCCCACGATGCAGCCTGGCGGTATTCGCGTGATAGAC
ATCCATCCTTGTGAGACCCGGGTGGCGGTAGTGGATGAGATGTATCCTGA
GGTGGAACTTCTCTTTACCACCCACAAACATTCCTCCCTTTCCTCGTCAT
CCCCAGTACCCCCGCCTTCCAAGTCCATGCCGATGGACGTGGGGGAGGAG
GAAGGCTTGGACGCAAAAGAGGGGGATAGGCGGGAACCCTCTTTGTGTGG
GATTTCGCAACCTCCTCTCTCCTCCTCCGCCTCCCCCTGGCCCCAGCCCA
CGATGCAGCCTGGCGGTATTCGCGTGATAGACATCCATCCTTGTGAGACC
CGGGTGGCGGTAGTGGATGAGATGTATCCTGAGGTGGAACTTCTCTTTAC
CACCCACAAACATTCCTCCCTTTCCTCGTCATCCCCAGTACCCCCGCCTT
CCAAGTCCATGCCGATGGACGTGGGGGAGGAGGAAGGCTTGGACGCAAAA
GAGGGGGATAGGCGGGAACCCTCTTTGTGTGGGATTTCGCAACCTCCTCT
CTCCTCCTCCGCCTCCCCCTGGCCCCAGCCCACGATGCAGCCTGGCGGTA
TTCGCGTGATAGACATCCATCCTTGTGAGACCCGGGTGGCGGTAGTGGAT
GAGATGTATCCTGAGGTGGAACTTCTCTTTACCACCCACAAACATTCCTC
CCTTTCCTCGTCATCCCCAGTACCCCCG
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Synonyms
Publications