EWM25598.1, cds5075 (CDS) Nannochloropsis gaditana

Overview
NameEWM25598.1
Unique Namecds5075
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002465.1:90821..90895 -
Alignment locationCM002465.1:90636..90692 -
Alignment locationCM002465.1:90276..90360 -
Alignment locationCM002465.1:90164..90228 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM25598.1
ProductWD40/YVTN repeat-like-containing domain protein
Orig transcript idgnl|cribi|Naga_101250g2.2591.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002465.1supercontigCM002465.1:90821..90895 -
CM002465.1supercontigCM002465.1:90636..90692 -
CM002465.1supercontigCM002465.1:90276..90360 -
CM002465.1supercontigCM002465.1:90164..90228 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
Vocabulary: INTERPRO
TermDefinition
IPR011044Quino_amine_DH_bsu
IPR015943WD40/YVTN_repeat-like_dom
Homology
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BLAST of EWM25598.1 vs. NCBI_GenBank
Match: gi|585107397|gb|EWM25598.1| (WD40/YVTN repeat-like-containing domain protein [Nannochloropsis gaditana])

HSP 1 Score: 189.504 bits (480), Expect = 4.314e-61
Identity = 93/93 (100.00%), Postives = 93/93 (100.00%), Query Frame = 0 
Query:    1 MYPEVELLFTTHKHSSLSSSSPVPPGIRVIDIHPCETRVAVVDEAGTLFVWDFATSSLLLRLPLAPAHDAAWPFQVHADGRGGGGRLGRKRGG 93
            MYPEVELLFTTHKHSSLSSSSPVPPGIRVIDIHPCETRVAVVDEAGTLFVWDFATSSLLLRLPLAPAHDAAWPFQVHADGRGGGGRLGRKRGG
Sbjct:    1 MYPEVELLFTTHKHSSLSSSSPVPPGIRVIDIHPCETRVAVVDEAGTLFVWDFATSSLLLRLPLAPAHDAAWPFQVHADGRGGGGRLGRKRGG 93
The following BLAST results are available for this feature:
BLAST of EWM25598.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 1
Match NameE-valueIdentityDescription
gi|585107397|gb|EWM25598.1|4.314e-61100.00WD40/YVTN repeat-like-containing domain protein [N... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna5087rna5087Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications