rna5083, rna5083 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna5083
Unique Name	rna5083
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	2646
Alignment location	CM002465.1:75394..76887 -

Link to JBrowse

Properties


Property Name	Value
Product	hypothetical protein
Orig transcript id	gnl\|cribi\|Naga_100936g2.9424.mrna
Orig protein id	gnl\|cribi\|Naga_100936g2.9424
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002465.1	supercontig	CM002465.1:75394..76887 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100936g2	gene4907	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM25602.1	cds5071	Nannochloropsis gaditana (N. gaditana B-31)	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna5083	rna5083-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002465.1:75394..76887-
coding sequence from alignment at CM002465.1:75394..76887-

mRNA sequence

>rna5083 ID=rna5083|Name=rna5083|organism=Nannochloropsis gaditana|type=mRNA|length=2646bp
TCGTTTCCTCCCCCTTTCCCGTCCTCAGGAGAATACCCGGGCTGGAGCGC
AACTCACACAGCTGCCGAAAAAGGCGATGTCTCCTCTCTTCGGTCCCTCC
TCCAATCCCTCCCTCCCTCCCTCCTTCCCTCCCTCGTCACAGGCCCTGGC
CCGGGAGGGGTGCGCCCCCTCATGCTGAGCGTCCGCACCGGCCATGTGGG
CGTGGTAAAGATTCTCCTTCAACTTGGGAAAGAGGCTTGTCGAGCGAGGG
ATGAGGTGGGAAGACACGCATTGCTGGAGGCCTGGGAGCGGAGGGACGTG
GAGATGATCCGTGTGTTGATTTCTTGCTTCCAGGAGGAAAGAGGAGGAAA
GTCATGGGGGAAAGACGAGGAGGATGAGGGGAGAGAGGAAAGGGAGGGAG
ACAGAAGGGGAGAGAAAACGCTGCCAGCCCCTTCGTTGAATGATTTGCAC
TGGCGTTCAGGCCAGGGCTTGATCCACGATGCGGTGAGGGAGGGATGGAG
GGAGGTGCTGAAAGAGCTTATTGCGATGGGGCGAAAGGGAAGCAAAAACA
TCGTAGACATAAACTTGAGAAGCGGTGGGATGGGAGTGACGGGCTGGGGA
TGGACGCCGATGCAAATGGCAGCGATGAAGGACGACAAGGAGGGAGGGAG
GTTGTTGTGGAGGGAGGAGGCGGTTCGAGAGAAGCATCGATGCGACCTGA
TGGTTCGCAGCTGGGTTTGGTGGAGGAAGATAGGAGGAGAAGAGGAGAGG
AAGAAGACACGATGAAACGCGTGCATTACTTCTTTTTCGAAATTCAGTTT
CTGATCCGAATCCTTCCTGTCAGGTACTTGGAAATGTTTGACAAATCATT
ATACAAGGAAATGTAGAAAAGCAGGATTATTCCCCAAAAATACTGGACCA
GCATTGCCGGCAAGAAGTGTTAAAATTATGCTTTTCCTTTTCCGTGAGTT
GGCGCTGGATTTGACTGACCGATCATACGCTCCGGACCCTCGCATTTCAT
TCCTTTTCAGCCACCGCACATGACTATTTTTCTCACTCTTTTCCGTGCAA
TACTATCCTTCTTTTTTCGTCCCATCCCAACCTGAGTCTCTTCTCTTCAC
GCTCTCATGCTGACGCCCTGATGGCTCTTTCTCCTCCTCTTGGCGCATGC
GTCAACCTCCTCCCTATCACGATGCTTCGTTGCTTCGTCGTCCTCGCTCA
TACTTCACTTTAAGTCCACTCTATCCCTTGCCTACCATGGTCAAAGCGTT
CATTTCCGACAGTCAGCTTTTTGGGGAGTTGAAAGCTCGTGGTGCTAGCA
CTATATGGCTAGAATATGTAGTCTGAAGGAAAAGCGTAGCGTTGAAGAAC
AGCGACACGGAAGATCGAGTAGAACGCAAGGCGTCAGTCATATGACCATA
GGCCTTACCGATTTTAGCAGGCTATCTTTGGATAAAAACACATACACAGT
CATAGAATGTTATGAACAACATACAGTACTACGCTCATAGGAAAGGGATG
GAAAATTTGTCGCACGAGATTGTGTTTGTATTTTATCGCTTGTTGAGCTT
GGCAGGAAGTGGGAAGCGCCCTCTTTTCGATACGTAATCGTTCATTGTGG
AACAATGTGGGGAATGAAACGCCCCTCCATCTTACTGACCCTGAAGAACT
CTACGAATGGATGAAAGGGCGAGCGCTTCTTGTCCATGTTGTCCGAGTGG
GGCCGCCAAAAGTGCGCTTCTTATTTTCATTGTGGTTTGGCATGGTGACA
GCACCAAGTTTTGGCAGGAAAGGCGGTCGCATGCATTCAACATCGCACTC
AGCTTTTGACAACATGCACCTCTGATTGGACAGGGTAAAATTCAAGAAAA
AAAATAGACGTGTTGAGATGTCGAGAGCTCCCCTAGCCGAGGACGAGAAG
CTCCTCCTCACCTTGTACACGAGTCTCAAGAGAGCAATTGCGCCTTTGCA
GCTCGTCAATTCTTCCACACCCATCGCTGAGATGTCTCTCTCGCCTGGAA
TTCTGCATTTCCTGGGGTTTGTCGTCCTCGCCAATAAAAGTCACGACGAA
ATCCTCTTCCTCACACAAGGGCGTCCTGCACGGCCTGCTTCCACCCCTCC
ATCGCTTCCAGGAAACGATGTGAAAAGTCTGGCCAAGCGCCTTCGGGAAG
AGCTTGACGTTGCCATGCACATTGATACGCCCTTGGGTGAATGTGCTCAT
GCGATTTCTGAGGCTGCTTCCCATCTACGAAATGTATTGATGAGCCGTGG
CGTTGATCTCCCAAATGAGATTGTAGCACAGGTGGCCGATCTGGACAATA
CACCTGTGTCTTTCAACGCACCGACAGACCTAGCATCTGCAAAGACAATG
GAAGCAAGATCGAGAAAACCTGTTGAAAATCATGCGCAGCAACGTGTTGT
TGAGAGTGAAGAGAGAAAACGGGGTTGGGCAACGCAGGAAAGGAAGAAAA
GTCTGGAGCAACTTTCATCGCCAGAATTTCATGTGGTTGCTGGCATACTC
ATAGCTTCATACGCCTTGATATCTCAAGGGCCACTGCATGTGCTCTTGCT
TGTAGTCGCATATTTTGTGATGACCAGGGTATTTAAAGTACTCCTGAAAC
TAATAGCATAAATGACTTGCGAAGGAAGCGAATTAGTTCACAGATG

protein sequence of rna5083

>rna5083-protein ID=rna5083-protein|Name=rna5083|organism=Nannochloropsis gaditana|type=polypeptide|length=497bp
MDCISLSHLSVPPRPSRPFLQVFSILILGSGVCLGSALLLLDQIQRGLPS
PYPAIFTNTTLSDVGRVLRQHDSTSTTQLVSLLDTRVIPLLHSSVSWLSD
ILTQLHYWLIRMDRGEMENMWAFTTSMLHYDKRWEESSDDKGGAGGYGKM
MEVGQFMRTTHMQYKNQVPLWLDEAFWLALRVLAVFLVIGAMRWGHQEQE
DSKTGEDSGRARDANDTSQCIALKDDPFQIKERNSGLTRSLPPNPGPAGG
MPLSPSLSPPPPSPPRPPLSPPSPSPTQSSLHLPPQKSLRLPAKVLAAFL
FAFGFALGGGLLCLDVGSREMTITQFSSSSSSSSSPSSSSFSSFSSPSVL
SLRSSSFTFSSLSSSFFLSSSFLSSFSHSSKDEQTDALCPPLTIATSLMD
LEGKEERQSSNISWFAHVYHRWQGPQGGRGSPSFPPLPSTSSLTSSAQAF
FIRSWRGSGEGGGKEGRKEGRKEGGKRRGGRDRIRCRRCCLRKELCR

mRNA from alignment at CM002465.1:75394..76887-

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna5083 ID=rna5083|Name=rna5083|organism=Nannochloropsis gaditana|type=mRNA|length=1494bp|location=Sequence derived from alignment at CM002465.1:75394..76887- (Nannochloropsis gaditana)
ATGGACTGTATATCGTTGTCCCATTTGAGCGTACCCCCCCGACCGTCCCG
CCCTTTTCTTCAAGTCTTCTCCATCCTCATCCTCGGCTCAGGGGTATGCT
TGGGCAGCGCATTACTTCTCCTTGATCAAATCCAGCGCGGCCTTCCGTCT
CCTTATCCGGCTATTTTTACAAATACTACCTTGTCCGACGTGGGAAGAGT
CCTTCGACAGCATGACTCGACAAGCACTACACAGCTCGTCTCTCTTTTGG
ACACACGTGTCATCCCTCTCCTCCATTCTTCTGTCTCATGGCTGTCCGAT
ATTTTGACACAGCTTCATTACTGGTTGATACGAATGGATAGAGGGGAGAT
GGAGAATATGTGGGCGTTCACGACGTCCATGCTTCACTACGATAAGCGAT
GGGAGGAAAGTAGTGACGATAAGGGTGGTGCTGGTGGATACGGGAAAATG
ATGGAGGTAGGACAATTTATGAGAACCACGCACATGCAATACAAAAATCA
GGTTCCTTTGTGGCTGGACGAGGCTTTCTGGTTGGCCTTGCGGGTGCTTG
CCGTCTTCCTCGTGATAGGCGCCATGCGGTGGGGCCACCAGGAGCAAGAG
GATTCCAAGACTGGGGAAGACTCAGGGAGAGCGAGGGATGCGAATGATAC
GAGCCAGTGCATTGCTCTGAAAGACGATCCATTCCAGATCAAGGAGCGCA
ACTCTGGGCTCACACGCTCCCTCCCTCCCAATCCAGGACCTGCCGGTGGT
ATGCCCCTCTCACCCTCCCTCTCTCCCCCCCCGCCCTCGCCACCTCGCCC
CCCCCTTTCCCCTCCCAGCCCATCCCCTACCCAATCTAGTCTGCATCTTC
CTCCTCAGAAATCTCTGCGTCTGCCAGCAAAGGTCCTCGCTGCCTTTCTC
TTTGCCTTCGGCTTTGCTTTGGGGGGGGGACTCCTCTGCCTCGACGTGGG
AAGCAGAGAGATGACTATTACTCAATTTTCTTCCTCATCATCCTCATCTT
CCTCTCCGTCCTCCTCCTCATTCTCCTCCTTCTCCTCACCCTCCGTCTTA
TCGCTCCGCTCTTCCTCTTTTACCTTTTCCTCCCTTTCTTCTTCCTTTTT
TCTCTCCTCCTCTTTTCTCTCCTCCTTCTCTCATTCATCCAAAGATGAAC
AAACAGATGCCCTCTGCCCTCCCCTTACGATCGCAACCTCACTAATGGAT
CTGGAAGGGAAGGAAGAGAGGCAGTCTTCCAATATCTCTTGGTTTGCACA
CGTCTACCATCGCTGGCAAGGTCCTCAAGGCGGGCGTGGGAGCCCTTCTT
TTCCTCCGCTACCTTCCACCTCCTCGCTCACTTCGTCGGCACAGGCTTTC
TTCATTCGGAGCTGGCGAGGATCGGGGGAGGGGGGGGGGAAGGAGGGAAG
GAAGGAGGGAAGGAAGGAGGGAGGGAAGAGGAGAGGGGGGAGAGACAGAA
TACGTTGCCGCCGTTGCTGCCTAAGGAAGGAGCTGTGTCGTTGA

Coding sequence (CDS) from alignment at CM002465.1:75394..76887-

>rna5083 ID=rna5083|Name=rna5083|organism=Nannochloropsis gaditana|type=CDS|length=1494bp|location=Sequence derived from alignment at CM002465.1:75394..76887- (Nannochloropsis gaditana)
ATGGACTGTATATCGTTGTCCCATTTGAGCGTACCCCCCCGACCGTCCCG
CCCTTTTCTTCAAGTCTTCTCCATCCTCATCCTCGGCTCAGGGGTATGCT
TGGGCAGCGCATTACTTCTCCTTGATCAAATCCAGCGCGGCCTTCCGTCT
CCTTATCCGGCTATTTTTACAAATACTACCTTGTCCGACGTGGGAAGAGT
CCTTCGACAGCATGACTCGACAAGCACTACACAGCTCGTCTCTCTTTTGG
ACACACGTGTCATCCCTCTCCTCCATTCTTCTGTCTCATGGCTGTCCGAT
ATTTTGACACAGCTTCATTACTGGTTGATACGAATGGATAGAGGGGAGAT
GGAGAATATGTGGGCGTTCACGACGTCCATGCTTCACTACGATAAGCGAT
GGGAGGAAAGTAGTGACGATAAGGGTGGTGCTGGTGGATACGGGAAAATG
ATGGAGGTAGGACAATTTATGAGAACCACGCACATGCAATACAAAAATCA
GGTTCCTTTGTGGCTGGACGAGGCTTTCTGGTTGGCCTTGCGGGTGCTTG
CCGTCTTCCTCGTGATAGGCGCCATGCGGTGGGGCCACCAGGAGCAAGAG
GATTCCAAGACTGGGGAAGACTCAGGGAGAGCGAGGGATGCGAATGATAC
GAGCCAGTGCATTGCTCTGAAAGACGATCCATTCCAGATCAAGGAGCGCA
ACTCTGGGCTCACACGCTCCCTCCCTCCCAATCCAGGACCTGCCGGTGGT
ATGCCCCTCTCACCCTCCCTCTCTCCCCCCCCGCCCTCGCCACCTCGCCC
CCCCCTTTCCCCTCCCAGCCCATCCCCTACCCAATCTAGTCTGCATCTTC
CTCCTCAGAAATCTCTGCGTCTGCCAGCAAAGGTCCTCGCTGCCTTTCTC
TTTGCCTTCGGCTTTGCTTTGGGGGGGGGACTCCTCTGCCTCGACGTGGG
AAGCAGAGAGATGACTATTACTCAATTTTCTTCCTCATCATCCTCATCTT
CCTCTCCGTCCTCCTCCTCATTCTCCTCCTTCTCCTCACCCTCCGTCTTA
TCGCTCCGCTCTTCCTCTTTTACCTTTTCCTCCCTTTCTTCTTCCTTTTT
TCTCTCCTCCTCTTTTCTCTCCTCCTTCTCTCATTCATCCAAAGATGAAC
AAACAGATGCCCTCTGCCCTCCCCTTACGATCGCAACCTCACTAATGGAT
CTGGAAGGGAAGGAAGAGAGGCAGTCTTCCAATATCTCTTGGTTTGCACA
CGTCTACCATCGCTGGCAAGGTCCTCAAGGCGGGCGTGGGAGCCCTTCTT
TTCCTCCGCTACCTTCCACCTCCTCGCTCACTTCGTCGGCACAGGCTTTC
TTCATTCGGAGCTGGCGAGGATCGGGGGAGGGGGGGGGGAAGGAGGGAAG
GAAGGAGGGAAGGAAGGAGGGAGGGAAGAGGAGAGGGGGGAGAGACAGAA
TACGTTGCCGCCGTTGCTGCCTAAGGAAGGAGCTGTGTCGTTGA

Synonyms

Publications