rna5081, rna5081 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna5081
Unique Name	rna5081
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	2670
Alignment location	CM002465.1:65905..67633 +

Link to JBrowse

Properties


Property Name	Value
Product	nitrogen assimilation regulatory protein
Orig transcript id	gnl\|cribi\|Naga_101767g1.9983.mrna
Orig protein id	gnl\|cribi\|Naga_101767g1.9983
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002465.1	supercontig	CM002465.1:65905..67633 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_101767g1	gene4905	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna5081	rna5081-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM25604.1	cds5069	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002465.1:65905..67633+
coding sequence from alignment at CM002465.1:65905..67633+

mRNA sequence

>rna5081 ID=rna5081|Name=rna5081|organism=Nannochloropsis gaditana|type=mRNA|length=2670bp
ATGCGAGTTACTGTCGCTTTAGCCTCGCTCATTCTGTTCGGTGCAGGGTG
GGCTCTCACTAGTGTGGTAGCACAAGGCTGTTCAGGGCTCATCTTGACTG
GTAAAATCCATCCTTCCTCCAAGCGCCAGATCTTGGCTGGGCAAGGGCAA
GCTAAGATTGCAATTAAAGTTCGGAGCAAACAGACCGTAGAAGACTTGAA
CGTCAAGGTTGCTCTACCAGCGGGACTGAGTGTAAAAAGAACAGCTTCCC
CTCGAAGAGCGGGGTCCCCCGTAATTGTCTCAAATATCGATGGTACAACA
GCAATATACTGGACAAAGTTTAACTTGACTCATAAACATTTGTTTAGGGT
CAAAGTCGGGGTGGAAAATTGTGCTTCTGAGGCTCTAGCTGTGAGAGTAC
TCGCGTATGTTCTCAACGCGACAGACTCGGCGACCGAATGTTCCCAGTCG
CTAGCCAATCCCCTAAATTTACGCATCCGCTATCCCGCCAGCCAGAAATA
TGGACTCGGAAAAAAGAAACAGAAGATGCCAATGACTTGTGCCCCAACAC
CAGCCCCTACAACCAACCCTTCAGCGCCATTTGTGCCCTTCGGAGTCGGG
CAGCGATGCCTTGAAGCAAGTAGACTAGCACCTTTCGAAGACAGGCGTTT
GAAAGGGCAAGAAGACACAATTAAGATTTCAGAGGATTCTAAAGTAGATG
ATAAAATCCACCGACCGCTGGGTCTTGTGGCAATCCAAACACCTTTCGAT
TGCTACACATACTGTTCGTTGAATGGGGGAGAATCCGCACCTTTCTTCTT
CAACTGGAATACAGCGACAACTCAATGCTTTTGCTGTGGTGGACAATGTA
CATTGATTCTTGATCCAGAATTTGATACATTTCAGGTTTTAATACCTGCA
ACTGCGGCTCCTACTGTTGCCCCCTCCCTTGGTCCGGCACCTGTTCCTAC
CTCTTCTCCCACAGCAACTCCCTCTCAAGGTCCTAGTATTGGCCCAACGA
CCTTACCCAGTGCACTTCCTACCGTCCTTCCTACGATTTCTCCAACTTTC
AACCCCACTGCTGCTCCGAGTGAAGCTCCAACCGATAACCCTACAGCTTC
CCCTACCCTCTCGCCCACTGCAGCTCCTACTCTCAGTCCCACTGCCTCTC
CTACAGCCGTACCTACAGCTTCTCCTACCCCCTCACCCACTGCAGCTCCT
ACTCTCAGTCCCACTGCCTCTCCTACAACCGCACCTACAGCTTCTCCTAC
CCCCTCACCCACTGCAGCTCCTACTCTCAGTCCCACTGCCTCTCCTACAA
CCGCACCTACAGCTTCTCCTACCCCCTCGCCCACTGCAGCTCCTACTCTC
AGTCCCACTGCCTCTCCTACAGCCGCACCTTCAGCTTCTCCTACCCCCTC
GCCCACTGCAGCTCCTTCTATGGCTCCAACCATAATTTGTTACAATGGAG
AGGCGCGCGTCGTAATGGCAGATGGGCAGTATAAGCCCGTGATCGCCCTT
CACAAGGGTGATCTAGTCTCTGTTGACCCCTTGCGACCTCACGTTCACGC
AAAGGTGCTGTCGCTTGTAGAGGCACCGATCGAAGAGGGAAGGGGATCTC
CCATGTGCGAGCTCGCACCAGGCTTTTTCTTGAGCAATTTACATCCCATT
CGCATGAATGGTACGAGATGGATTCGTCCAGAATGGGAGTTCCATTGCAG
TACAAGGAAATATTTTTCGAGTCTTTTCAACATAATTCTTGAGGAAGGAG
TTCACCATACTGTCAACATCGAGGGTTTTGCTGTGGCAACGTGGGTGAAG
TATCCTGTGGGTGTGCCCATGATCGATCGACCTTACAAACTGGAGATGTA
TCGGCTAGTAGAGGCTAGTCCGAATTTCTCAGCCGGCCTTGTGAAAATTG
ATACCAAGGAAATGCTAAAACTTAAGATGGCGTGGCTGGAAGCCAACCCT
ATGGCAATGGCAATGGAACGCTTTTACACTACATCACCTGTGGGGTCATC
TCATACGGAGTTATAATTAATATTTCTGACTGTCGTAAGACCTAAGACAT
TATTTGATGCTTCAGCGTACGTAGGTGCTAGGACGAAGTCACACACACGG
CACATGACGCCACAGGATCGAATGGACTCTCCGAAGAGCCAGGTGCTCAG
TCACTGATGTGACTTAGTCTTCCGAGCTGGAAAGGTGTCCTTATCAGAAT
TGCACGCGGCAGACGGACGAGAATAAGACTCTAGCCATTGTATTGTATAC
TACCTCAGGCTCTTTCATTCCTTTAAAAAGTCTTCGGTATAGTAAGTATT
AAGTATGATTGCAAGCGATTTAATAATAAGTATCAAGTATGAGTGCAAGT
TGTTTAATAATTAGTATCAAGTTTGAGTGCAAGTTGTTTAATAATCAGTA
TAAGTATGAGTGCAAGCTGTTTAATTGTAAAATTGTCAATCGGAATCGCC
TTGGCTACAATGAGGTAGGATCCGCTTCTTTCCTTTGTTGGAATCGATAA
TGCCCATTGTGTCCATTGAGAGGCCTATGCATTTTCGGACTTTGCAGGAG
TTCACGTGGAAGCATCGTCATTCCCTCCTATAAGCTATCCATTTTTCACT
CCATATATCGGTCAGTACCAGCGATTCAAGAGGCCACACGTTTCTTTTGG
CGAGAAAAGATAAGAAAAGG

protein sequence of rna5081

>rna5081-protein ID=rna5081-protein|Name=rna5081|organism=Nannochloropsis gaditana|type=polypeptide|length=266bp
SLPPSNNLFETVPWLRQFLRDIDWPHGLNNGFTRYIFPIYLAGLFLGPQD
RDHNVLLQLFWSWWWPAIMVIYPVLGRIWCSVCPFMIYGEWAQETLKKVF
PTFKLKKWPQFITQKWGPWFLYGLFVAILYWEELWDLPQNAALSAWLLLL
ITGGAVVTSLQYEKRLWCASLCPIGGMNGMFAKLSLLSVRTEPGLCQSCG
QYLCINNEKNNKPGMPVYILESRFSFGRRDTGLWMLPSMYMYSWIRCLPG
DSLSLLPREKREGRRK

mRNA from alignment at CM002465.1:65905..67633+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna5081 ID=rna5081|Name=rna5081|organism=Nannochloropsis gaditana|type=mRNA|length=1729bp|location=Sequence derived from alignment at CM002465.1:65905..67633+ (Nannochloropsis gaditana)
tccctccctcccagcaaCAACCTTTTCGAGACCGTCCCCTGGCTCCGTCA
ATTTCTGCGAGACATCGATTGGCCACACgtaaggaggaagcgagggcggg
aggagggcgaaacCACCTCGGACGATGTTTTGACACGAAAGTCACGAGAT
GCTCCTGGGGGCATTCCCTTTTatccatcctttctcttcccccctcccct
ccctccctccctaggGCCTGAACAACGGATTCACCCGCTACATCTTTCCC
ATCTACCTGGCCGGTCTGTTCTTGGGCCCTCAGGACAGGGACCAcaacgt
cctcctccagctcttctGGTCgtggtgagggaaagggggaagggagaaaa
gggacagGAGAGAAGGTCCTTGTCCTCTGTCGGAGGGGTATCATGTAGGC
AGGACGAGGAATAAATGCAGACAGGGGAAGTgtccggagggaaggaggag
aagggagacaTGGCAAGCATATGGGCCGGCCGCAGAGATCGAGCGATTTC
ACCGGCTTCTGTCGTtcgttttccttcctcccctttcccccctccttttc
ctcgccctcctcctttccgatCGTCAGGTGGTGGCCAGCCATCATGGTCA
TCTACCCCGTCTTGGGCCGCATATGgtacgtcctccctcccttccatccc
tccctccctccctcccccccttcctccctgtctcctgcGAGATGAGGACC
TACCCGCACATAAATATTGAGTGTAATGCTGATTTTGTACTTTGAAAGGa
gcccacccttcctccctccttccatatctcttccttcccatttTCTCTTt
ggccccccttcctccttcccttcctcaggtGCTCTGTCTGCCCTTTCATG
ATCTACGGGGAATGGGCACAGGAGACCCTCAAGAAAGTGTTTCCCACTTT
CAAGCTCAAGAAATGGCCGCAGTTCATCACGCAGAAATGGGGTCCCTGGT
TCCTCTAcggtgccctccctccctccctccttccctccctctttccctcc
ctccaaccctcccttcttccctttctccttacGCGCCTTGTAACAATAAT
CCCTCTTGGATCCCcataccctcccttcctcacctcctccctctgtcgac
tctttcatccctcccctctctcgccccctctctccctcaggcCTCTTTGT
CGCCATCCTGTACTGGGAAGAACTCTGGGACCTCCCCCAAAACGCCGCTC
TCTCTGCCTGGCTACTTCTCCTCATCACAGGTaggtcctcctttccccct
cccaccctccctcccccgccgtccttcccacccaccctcctgtcctccgt
ccctccctcaggcggCGCCGTGGTCACCTCCCTCCAATACGAGAAGCGAC
TCTGGTGCGCCTCCCTGTGCCCCATTGGGGGCATGAACGGCATGTTCGcc
aagctctccctcctctccgtgcgGACAGAGCCCGGGCTCTGCCAGTCCTG
CGGGCAGTACCTCTGCATCAACAACGAGAAGAACAACAAACCAGGTATGC
CTGTATATATACTGGAAAGTAGGTTTAGTTTTGGACGAAGAGATACAGGA
TTGTGGATGCTCCCCTCTATGTATATGTATTCATGGATACGCTGCCTGCC
TGGAGATTCCCTGTCTCTATTGCccagggagaagagagagggtaGACGGA
AATGACTAGATGCAGTCTCACACGTGGCACACGAGATAATCACGATGTAc
gtctgcttcctctttcgtgccctcccgcc

Coding sequence (CDS) from alignment at CM002465.1:65905..67633+

>rna5081 ID=rna5081|Name=rna5081|organism=Nannochloropsis gaditana|type=CDS|length=4806bp|location=Sequence derived from alignment at CM002465.1:65905..67633+ (Nannochloropsis gaditana)
tccctccctcccagcaaCAACCTTTTCGAGACCGTCCCCTGGCTCCGTCA
ATTTCTGCGAGACATCGATTGGCCACACgGCCTGAACAACGGATTCACCC
GCTACATCTTTCCCATCTACCTGGCCGGTCTGTTCTTGGGCCCTCAGGAC
AGGGACCAcaacgtcctcctccagctcttctGGTCgtgGTGGTGGCCAGC
CATCATGGTCATCTACCCCGTCTTGGGCCGCATATGgtGCTCTGTCTGCC
CTTTCATGATCTACGGGGAATGGGCACAGGAGACCCTCAAGAAAGTGTTT
CCCACTTTCAAGCTCAAGAAATGGCCGCAGTTCATCACGCAGAAATGGGG
TCCCTGGTTCCTCTAcggcCTCTTTGTCGCCATCCTGTACTGGGAAGAAC
TCTGGGACCTCCCCCAAAACGCCGCTCTCTCTGCCTGGCTACTTCTCCTC
ATCACAGgcggCGCCGTGGTCACCTCCCTCCAATACGAGAAGCGACTCTG
GTGCGCCTCCCTGTGCCCCATTGGGGGCATGAACGGCATGTTCGccaagc
tctccctcctctccgtgcgGACAGAGCCCGGGCTCTGCCAGTCCTGCGGG
CAGTACCTCTGCATCAACAACGAGAAGAACAACAAACCAGGTATGCCTGT
ATATATACTGGAAAGTAGGTTTAGTTTTGGACGAAGAGATACAGGATTGT
GGATGCTCCCCTCTATGTATATGTATTCATGGATACGCTGCCTGCCTGGA
GATTCCCTGTCTCTATTGCccagggagaagagagagggtaGACGGAAATG
AtccctccctcccagcaaCAACCTTTTCGAGACCGTCCCCTGGCTCCGTC
AATTTCTGCGAGACATCGATTGGCCACACgGCCTGAACAACGGATTCACC
CGCTACATCTTTCCCATCTACCTGGCCGGTCTGTTCTTGGGCCCTCAGGA
CAGGGACCAcaacgtcctcctccagctcttctGGTCgtgGTGGTGGCCAG
CCATCATGGTCATCTACCCCGTCTTGGGCCGCATATGgtGCTCTGTCTGC
CCTTTCATGATCTACGGGGAATGGGCACAGGAGACCCTCAAGAAAGTGTT
TCCCACTTTCAAGCTCAAGAAATGGCCGCAGTTCATCACGCAGAAATGGG
GTCCCTGGTTCCTCTAcggcCTCTTTGTCGCCATCCTGTACTGGGAAGAA
CTCTGGGACCTCCCCCAAAACGCCGCTCTCTCTGCCTGGCTACTTCTCCT
CATCACAGgcggCGCCGTGGTCACCTCCCTCCAATACGAGAAGCGACTCT
GGTGCGCCTCCCTGTGCCCCATTGGGGGCATGAACGGCATGTTCGccaag
ctctccctcctctccgtgcgGACAGAGCCCGGGCTCTGCCAGTCCTGCGG
GCAGTACCTCTGCATCAACAACGAGAAGAACAACAAACCAGGTATGCCTG
TATATATACTGGAAAGTAGGTTTAGTTTTGGACGAAGAGATACAGGATTG
TGGATGCTCCCCTCTATGTATATGTATTCATGGATACGCTGCCTGCCTGG
AGATTCCCTGTCTCTATTGCccagggagaagagagagggtaGACGGAAAT
GAtccctccctcccagcaaCAACCTTTTCGAGACCGTCCCCTGGCTCCGT
CAATTTCTGCGAGACATCGATTGGCCACACgGCCTGAACAACGGATTCAC
CCGCTACATCTTTCCCATCTACCTGGCCGGTCTGTTCTTGGGCCCTCAGG
ACAGGGACCAcaacgtcctcctccagctcttctGGTCgtgGTGGTGGCCA
GCCATCATGGTCATCTACCCCGTCTTGGGCCGCATATGgtGCTCTGTCTG
CCCTTTCATGATCTACGGGGAATGGGCACAGGAGACCCTCAAGAAAGTGT
TTCCCACTTTCAAGCTCAAGAAATGGCCGCAGTTCATCACGCAGAAATGG
GGTCCCTGGTTCCTCTAcggcCTCTTTGTCGCCATCCTGTACTGGGAAGA
ACTCTGGGACCTCCCCCAAAACGCCGCTCTCTCTGCCTGGCTACTTCTCC
TCATCACAGgcggCGCCGTGGTCACCTCCCTCCAATACGAGAAGCGACTC
TGGTGCGCCTCCCTGTGCCCCATTGGGGGCATGAACGGCATGTTCGccaa
gctctccctcctctccgtgcgGACAGAGCCCGGGCTCTGCCAGTCCTGCG
GGCAGTACCTCTGCATCAACAACGAGAAGAACAACAAACCAGGTATGCCT
GTATATATACTGGAAAGTAGGTTTAGTTTTGGACGAAGAGATACAGGATT
GTGGATGCTCCCCTCTATGTATATGTATTCATGGATACGCTGCCTGCCTG
GAGATTCCCTGTCTCTATTGCccagggagaagagagagggtaGACGGAAA
TGAtccctccctcccagcaaCAACCTTTTCGAGACCGTCCCCTGGCTCCG
TCAATTTCTGCGAGACATCGATTGGCCACACgGCCTGAACAACGGATTCA
CCCGCTACATCTTTCCCATCTACCTGGCCGGTCTGTTCTTGGGCCCTCAG
GACAGGGACCAcaacgtcctcctccagctcttctGGTCgtgGTGGTGGCC
AGCCATCATGGTCATCTACCCCGTCTTGGGCCGCATATGgtGCTCTGTCT
GCCCTTTCATGATCTACGGGGAATGGGCACAGGAGACCCTCAAGAAAGTG
TTTCCCACTTTCAAGCTCAAGAAATGGCCGCAGTTCATCACGCAGAAATG
GGGTCCCTGGTTCCTCTAcggcCTCTTTGTCGCCATCCTGTACTGGGAAG
AACTCTGGGACCTCCCCCAAAACGCCGCTCTCTCTGCCTGGCTACTTCTC
CTCATCACAGgcggCGCCGTGGTCACCTCCCTCCAATACGAGAAGCGACT
CTGGTGCGCCTCCCTGTGCCCCATTGGGGGCATGAACGGCATGTTCGcca
agctctccctcctctccgtgcgGACAGAGCCCGGGCTCTGCCAGTCCTGC
GGGCAGTACCTCTGCATCAACAACGAGAAGAACAACAAACCAGGTATGCC
TGTATATATACTGGAAAGTAGGTTTAGTTTTGGACGAAGAGATACAGGAT
TGTGGATGCTCCCCTCTATGTATATGTATTCATGGATACGCTGCCTGCCT
GGAGATTCCCTGTCTCTATTGCccagggagaagagagagggtaGACGGAA
ATGAtccctccctcccagcaaCAACCTTTTCGAGACCGTCCCCTGGCTCC
GTCAATTTCTGCGAGACATCGATTGGCCACACgGCCTGAACAACGGATTC
ACCCGCTACATCTTTCCCATCTACCTGGCCGGTCTGTTCTTGGGCCCTCA
GGACAGGGACCAcaacgtcctcctccagctcttctGGTCgtgGTGGTGGC
CAGCCATCATGGTCATCTACCCCGTCTTGGGCCGCATATGgtGCTCTGTC
TGCCCTTTCATGATCTACGGGGAATGGGCACAGGAGACCCTCAAGAAAGT
GTTTCCCACTTTCAAGCTCAAGAAATGGCCGCAGTTCATCACGCAGAAAT
GGGGTCCCTGGTTCCTCTAcggcCTCTTTGTCGCCATCCTGTACTGGGAA
GAACTCTGGGACCTCCCCCAAAACGCCGCTCTCTCTGCCTGGCTACTTCT
CCTCATCACAGgcggCGCCGTGGTCACCTCCCTCCAATACGAGAAGCGAC
TCTGGTGCGCCTCCCTGTGCCCCATTGGGGGCATGAACGGCATGTTCGcc
aagctctccctcctctccgtgcgGACAGAGCCCGGGCTCTGCCAGTCCTG
CGGGCAGTACCTCTGCATCAACAACGAGAAGAACAACAAACCAGGTATGC
CTGTATATATACTGGAAAGTAGGTTTAGTTTTGGACGAAGAGATACAGGA
TTGTGGATGCTCCCCTCTATGTATATGTATTCATGGATACGCTGCCTGCC
TGGAGATTCCCTGTCTCTATTGCccagggagaagagagagggtaGACGGA
AATGAtccctccctcccagcaaCAACCTTTTCGAGACCGTCCCCTGGCTC
CGTCAATTTCTGCGAGACATCGATTGGCCACACgGCCTGAACAACGGATT
CACCCGCTACATCTTTCCCATCTACCTGGCCGGTCTGTTCTTGGGCCCTC
AGGACAGGGACCAcaacgtcctcctccagctcttctGGTCgtgGTGGTGG
CCAGCCATCATGGTCATCTACCCCGTCTTGGGCCGCATATGgtGCTCTGT
CTGCCCTTTCATGATCTACGGGGAATGGGCACAGGAGACCCTCAAGAAAG
TGTTTCCCACTTTCAAGCTCAAGAAATGGCCGCAGTTCATCACGCAGAAA
TGGGGTCCCTGGTTCCTCTAcggcCTCTTTGTCGCCATCCTGTACTGGGA
AGAACTCTGGGACCTCCCCCAAAACGCCGCTCTCTCTGCCTGGCTACTTC
TCCTCATCACAGgcggCGCCGTGGTCACCTCCCTCCAATACGAGAAGCGA
CTCTGGTGCGCCTCCCTGTGCCCCATTGGGGGCATGAACGGCATGTTCGc
caagctctccctcctctccgtgcgGACAGAGCCCGGGCTCTGCCAGTCCT
GCGGGCAGTACCTCTGCATCAACAACGAGAAGAACAACAAACCAGGTATG
CCTGTATATATACTGGAAAGTAGGTTTAGTTTTGGACGAAGAGATACAGG
ATTGTGGATGCTCCCCTCTATGTATATGTATTCATGGATACGCTGCCTGC
CTGGAGATTCCCTGTCTCTATTGCccagggagaagagagagggtaGACGG
AAATGA

Synonyms

Publications