EWM25604.1, cds5069 (CDS) Nannochloropsis gaditana

Overview
NameEWM25604.1
Unique Namecds5069
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002465.1:65905..65982 +
Alignment locationCM002465.1:66119..66228 +
Alignment locationCM002465.1:66482..66529 +
Alignment locationCM002465.1:66733..66863 +
Alignment locationCM002465.1:67045..67134 +
Alignment locationCM002465.1:67216..67559 +

Link to JBrowse

Properties
Property NameValue
Start range65905
Start range.
Protein idEWM25604.1
Productnitrogen assimilation regulatory protein
Partialtrue
Orig transcript idgnl|cribi|Naga_101767g1.9983.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002465.1supercontigCM002465.1:65905..65982 +
CM002465.1supercontigCM002465.1:66119..66228 +
CM002465.1supercontigCM002465.1:66482..66529 +
CM002465.1supercontigCM002465.1:66733..66863 +
CM002465.1supercontigCM002465.1:67045..67134 +
CM002465.1supercontigCM002465.1:67216..67559 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0005488binding
GO:0051536iron-sulfur cluster binding
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Vocabulary: INTERPRO
TermDefinition
IPR0014504Fe4S-bd_dom
Homology
BLAST of EWM25604.1 vs. NCBI_GenBank
Match: gi|585107416|gb|EWM25604.1| (nitrogen assimilation regulatory protein, partial [Nannochloropsis gaditana])

HSP 1 Score: 541.962 bits (1395), Expect = 0.000e+0
Identity = 266/266 (100.00%), Postives = 266/266 (100.00%), Query Frame = 0
Query:    1 SLPPSNNLFETVPWLRQFLRDIDWPHGLNNGFTRYIFPIYLAGLFLGPQDRDHNVLLQLFWSWWWPAIMVIYPVLGRIWCSVCPFMIYGEWAQETLKKVFPTFKLKKWPQFITQKWGPWFLYGLFVAILYWEELWDLPQNAALSAWLLLLITGGAVVTSLQYEKRLWCASLCPIGGMNGMFAKLSLLSVRTEPGLCQSCGQYLCINNEKNNKPGMPVYILESRFSFGRRDTGLWMLPSMYMYSWIRCLPGDSLSLLPREKREGRRK 266
            SLPPSNNLFETVPWLRQFLRDIDWPHGLNNGFTRYIFPIYLAGLFLGPQDRDHNVLLQLFWSWWWPAIMVIYPVLGRIWCSVCPFMIYGEWAQETLKKVFPTFKLKKWPQFITQKWGPWFLYGLFVAILYWEELWDLPQNAALSAWLLLLITGGAVVTSLQYEKRLWCASLCPIGGMNGMFAKLSLLSVRTEPGLCQSCGQYLCINNEKNNKPGMPVYILESRFSFGRRDTGLWMLPSMYMYSWIRCLPGDSLSLLPREKREGRRK
Sbjct:    1 SLPPSNNLFETVPWLRQFLRDIDWPHGLNNGFTRYIFPIYLAGLFLGPQDRDHNVLLQLFWSWWWPAIMVIYPVLGRIWCSVCPFMIYGEWAQETLKKVFPTFKLKKWPQFITQKWGPWFLYGLFVAILYWEELWDLPQNAALSAWLLLLITGGAVVTSLQYEKRLWCASLCPIGGMNGMFAKLSLLSVRTEPGLCQSCGQYLCINNEKNNKPGMPVYILESRFSFGRRDTGLWMLPSMYMYSWIRCLPGDSLSLLPREKREGRRK 266          
BLAST of EWM25604.1 vs. NCBI_GenBank
Match: gi|504973094|ref|WP_015160196.1| (transcriptional regulator [Chamaesiphon minutus] >gi|428017959|gb|AFY94053.1| transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Chamaesiphon minutus PCC 6605])

HSP 1 Score: 241.506 bits (615), Expect = 1.842e-70
Identity = 118/218 (54.13%), Postives = 148/218 (67.89%), Query Frame = 0
Query:    7 NLFETVPWLRQFLRDIDWPHGLNNGFTRYIFPIYLAGLFLGPQDRDHNVLLQLFWSWWWPAIMVIYPVLGRIWCSVCPFMIYGEWAQETLKKVFPTFKLKKWPQFITQKWGPWFLYGLFVAILYWEELWDLPQNAALSAWLLLLITGGAVVTSLQYEKRLWCASLCPIGGMNGMFAKLSLLSVRTEPGLCQS-CGQYLCIN-----NEKNNKPGMPVY 218
            NL    P LRQFL    +P  +N GFT ++FPI +A LFL PQDR HN  L LFW+WWWP I++++P++GR+WC+ CPFMIYGE  Q+   K FP   LKKWP+   +KWG WFL+GLFV I  WEELW+L   A LS+WLLLLITGGAV+ SL +E+R WC  LCPIGGMNG+FAKLS++ +R + G C + C  Y C        E     G P+Y
Sbjct:  402 NLLNAYPRLRQFLNSDWYPDRINYGFTAWVFPIVVAILFLAPQDRQHNFALNLFWAWWWPLILLLFPIIGRLWCAFCPFMIYGEIVQKLSLKFFPR-TLKKWPRETAEKWGGWFLFGLFVLIFLWEELWNLENTAYLSSWLLLLITGGAVLFSLIFERRFWCRYLCPIGGMNGLFAKLSIVELRAQQGTCAAECTTYHCYKGGVGFGEGQTTNGCPIY 618          
BLAST of EWM25604.1 vs. NCBI_GenBank
Match: gi|1027791482|ref|WP_063718157.1| (AAA family ATPase, partial [Leptolyngbya valderiana] >gi|1025910801|gb|OAB59494.1| AAA family ATPase, partial [Leptolyngbya valderiana BDU 20041])

HSP 1 Score: 238.81 bits (608), Expect = 1.820e-69
Identity = 115/218 (52.75%), Postives = 149/218 (68.35%), Query Frame = 0
Query:    7 NLFETVPWLRQFLRDIDWPHGLNNGFTRYIFPIYLAGLFLGPQDRDHNVLLQLFWSWWWPAIMVIYPVLGRIWCSVCPFMIYGEWAQETLKKVFPTFKLKKWPQFITQKWGPWFLYGLFVAILYWEELWDLPQNAALSAWLLLLITGGAVVTSLQYEKRLWCASLCPIGGMNGMFAKLSLLSVRTEPGLCQS-CGQYLCI-----NNEKNNKPGMPVY 218
            NLF+  P LRQFLR   WP GLN G T ++F + +  LF+GPQ RD NV L LFW+WWWP +++ +P +GR+WC+VCPFMIYGE  Q+   K+FP   L++WP+   ++WG WFL+GLFV I  WEELW+L   A LS+ LLLLIT GAV+ SL +E+R WC  LCPIGGMNG+FAKLS+  +R +PG+C + C  Y C        E     G P+Y
Sbjct:  398 NLFKAYPRLRQFLRSRFWPDGLNYGITTWLFALVVILLFVGPQTRDRNVALNLFWAWWWPLVLIGFPFVGRLWCAVCPFMIYGELTQKLSLKLFPR-TLRRWPRESAERWGGWFLFGLFVLIFLWEELWNLENTAYLSSCLLLLITAGAVIFSLIFERRFWCRYLCPIGGMNGLFAKLSMTELRAQPGICSAECTTYQCYKGGPRKGEGQETEGCPLY 614          
BLAST of EWM25604.1 vs. NCBI_GenBank
Match: gi|515875704|ref|WP_017306287.1| (hypothetical protein [Spirulina subsalsa])

HSP 1 Score: 236.113 bits (601), Expect = 3.589e-69
Identity = 115/228 (50.44%), Postives = 152/228 (66.67%), Query Frame = 0
Query:    7 NLFETVPWLRQFLRDIDWPHGLNNGFTRYIFPIYLAGLFLGPQDRDHNVLLQLFWSWWWPAIMVIYPVLGRIWCSVCPFMIYGEWAQETLKKVFPTFKLKKWPQFITQKWGPWFLYGLFVAILYWEELWDLPQNAALSAWLLLLITGGAVVTSLQYEKRLWCASLCPIGGMNGMFAKLSLLSVRTEPGLCQS-CGQYLC-----INNEKNNKPGMPVYILESRFSFGR 228
            NL +T P LR FL+   WP GLN G T ++F + +  LF+GPQ RD NV L LFW+WWWP +++ +P++GR+WC+VCPFMIYGE  Q+   K++P  +LK WP+   ++WG WFL+GLF  I  WEELWDLP  A LS+ LLLLITGGAV+ SL +E+R WC  LCPIGGMNG+FAKLS+  +R + G+C + C  Y C        E     G P+Y   ++    R
Sbjct:  286 NLLKTYPQLRAFLKSKFWPEGLNYGITTWVFALVVIMLFVGPQTRDQNVALNLFWAWWWPLVLLGFPLVGRLWCAVCPFMIYGELTQKLSLKLWPR-ELKPWPRQTAERWGGWFLFGLFALIFLWEELWDLPNTAYLSSCLLLLITGGAVICSLLFERRFWCRYLCPIGGMNGLFAKLSITELRAQTGICAAECTTYQCYKGGPAKGEGQETAGCPLYSHPAQLQDNR 512          
BLAST of EWM25604.1 vs. NCBI_GenBank
Match: gi|428686165|gb|AFZ46025.1| (nitrogen assimilation regulatory protein [Cyanobacterium stanieri PCC 7202])

HSP 1 Score: 234.187 bits (596), Expect = 7.586e-68
Identity = 112/218 (51.38%), Postives = 141/218 (64.68%), Query Frame = 0
Query:    7 NLFETVPWLRQFLRDIDWPHGLNNGFTRYIFPIYLAGLFLGPQDRDHNVLLQLFWSWWWPAIMVIYPVLGRIWCSVCPFMIYGEWAQETLKKVFPTFKLKKWPQFITQKWGPWFLYGLFVAILYWEELWDLPQNAALSAWLLLLITGGAVVTSLQYEKRLWCASLCPIGGMNGMFAKLSLLSVRTEPGLCQS-CGQYLCI-----NNEKNNKPGMPVY 218
            NL    P  R FLR   WP  +N GFT  +F + +  LF+GPQ RD N  L LFW+WWWP I+V +P +GR+WCSVCPFMIYGE  Q+  + +FP ++LKKWP+   +KWG WFL+  F  IL WEELWDLP  A LS+ LLLLIT GA++ S  +E+R WC  LCPIGGMNGMFAKL++  +R + G C + C  Y C        E     G P+Y
Sbjct:  398 NLLTAYPRFRHFLRSPWWPDRINYGFTLTVFALVVIILFVGPQTRDQNFALNLFWAWWWPLILVAFPFVGRLWCSVCPFMIYGEVTQKLTQTLFPNYQLKKWPRKTAEKWGGWFLFTGFALILLWEELWDLPNTAYLSSCLLLLITAGAMICSAIFERRFWCRYLCPIGGMNGMFAKLAMTELRAQQGTCSAECNTYQCYKGGPEKGEGQETNGCPLY 615          
BLAST of EWM25604.1 vs. NCBI_GenBank
Match: gi|504986496|ref|WP_015173598.1| (cyclic nucleotide-binding protein [Geitlerinema sp. PCC 7407] >gi|427986890|gb|AFY68034.1| cyclic nucleotide-binding protein [Geitlerinema sp. PCC 7407])

HSP 1 Score: 233.802 bits (595), Expect = 1.148e-67
Identity = 119/228 (52.19%), Postives = 149/228 (65.35%), Query Frame = 0
Query:    7 NLFETVPWLRQFLRDIDWPHGLNNGFTRYIFPIYLAGLFLGPQDRDHNVLLQLFWSWWWPAIMVIYPVLGRIWCSVCPFMIYGEWAQETLKKVFPTFKLKKWPQFITQKWGPWFLYGLFVAILYWEELWDLPQNAALSAWLLLLITGGAVVTSLQYEKRLWCASLCPIGGMNGMFAKLSLLSVRTEPGLCQ-SCGQYLCI-----NNEKNNKPGMPVYILESRFSFGR 228
            NL  T P LR+FLR   WP  LN GFT  +F + +A L LGPQ RD NV L LFW+WWWP +++ +P +GR+WC+VCPFMIYGE  Q+   K+FP   L  WP+ +  KWG WFL+GLFV IL WEELW+L   A LSA LLLLIT GAV+ S  +E+R WC  LCPIGGMNG+FAKLS++ +R + G+C  SC  Y C        E     G PVY   ++ +  R
Sbjct:  405 NLLNTYPALRRFLRSPWWPDRLNYGFTLTVFALVVAVLILGPQTRDRNVALNLFWAWWWPLVLISFPFVGRLWCAVCPFMIYGELMQKLSLKLFPR-DLLPWPRQMADKWGGWFLFGLFVLILLWEELWNLENTAYLSACLLLLITAGAVIFSQLFERRFWCRYLCPIGGMNGLFAKLSIVELRAQQGICSASCTTYQCYKGGPEKGEGQETNGCPVYSHPAQLTDNR 631          
BLAST of EWM25604.1 vs. NCBI_GenBank
Match: gi|1053971769|ref|WP_066117681.1| (AAA family ATPase [Geminocystis sp. NIES-3709] >gi|770471792|dbj|BAQ64684.1| transcriptional regulatory protein tyrR [Geminocystis sp. NIES-3709])

HSP 1 Score: 233.032 bits (593), Expect = 1.790e-67
Identity = 113/210 (53.81%), Postives = 137/210 (65.24%), Query Frame = 0
Query:    7 NLFETVPWLRQFLRDIDWPHGLNNGFTRYIFPIYLAGLFLGPQDRDHNVLLQLFWSWWWPAIMVIYPVLGRIWCSVCPFMIYGEWAQETLKKVFPTFKLKKWPQFITQKWGPWFLYGLFVAILYWEELWDLPQNAALSAWLLLLITGGAVVTSLQYEKRLWCASLCPIGGMNGMFAKLSLLSVRTEPGLCQS-CGQYLCINNEKNNKPGM 215
            NL    P LR FLR   WP  +N G T   FPI +A LF GPQ RD N  L LFW+WWWP I++ +P +GR+WCSVCPFMIYGE  Q+    +FP  +LK WP+   +KWG WFL+GLF  IL WEELW+LP  A LSA LLLLIT GA++ S  +E+R WC  LCPIGGMNGMFAKLS+  +R + G C + C  Y C         G+
Sbjct:  382 NLLNAYPRLRYFLRSAWWPDRINYGITLTAFPIIIAILFFGPQTRDQNFALNLFWAWWWPLILIGFPFVGRLWCSVCPFMIYGEVTQKLSVWLFPNHQLKSWPRETAEKWGGWFLFGLFTLILLWEELWELPNTAYLSACLLLLITAGAMICSAIFERRFWCRYLCPIGGMNGMFAKLSMTELRAQQGTCSAECTTYQCYKGGPQKGEGL 591          
BLAST of EWM25604.1 vs. NCBI_GenBank
Match: gi|1130430120|ref|WP_075598867.1| (AAA family ATPase [Oscillatoriales cyanobacterium 'hensonii'] >gi|1129071913|gb|OLP17904.1| AAA family ATPase [Oscillatoriales cyanobacterium 'hensonii'])

HSP 1 Score: 233.032 bits (593), Expect = 2.441e-67
Identity = 115/218 (52.75%), Postives = 143/218 (65.60%), Query Frame = 0
Query:    7 NLFETVPWLRQFLRDIDWPHGLNNGFTRYIFPIYLAGLFLGPQDRDHNVLLQLFWSWWWPAIMVIYPVLGRIWCSVCPFMIYGEWAQETLKKVFPTFKLKKWPQFITQKWGPWFLYGLFVAILYWEELWDLPQNAALSAWLLLLITGGAVVTSLQYEKRLWCASLCPIGGMNGMFAKLSLLSVRTEPGLC-QSCGQYLCI-----NNEKNNKPGMPVY 218
            NL    PWLRQFLR   WP  +N GFT  +F I +  LFLGPQ RD N+ L  FW+WWWP I++ +P +GR+WCSVCPFMIYGE AQ+    ++P  +L +WP+    + G WFL+GLF  IL WEELWDL   A LSA LLLLIT GAV+ SL +E+R WC  LCPIGGMNG+FAKLS+  +R + G+C  +C  Y C        E     G P+Y
Sbjct:  402 NLLNVYPWLRQFLRSAWWPDRINYGFTLAVFAIVVVLLFLGPQTRDRNIALNFFWAWWWPGILLAFPFVGRLWCSVCPFMIYGELAQKLSLWIYPR-QLGRWPRQAADRIGGWFLFGLFTLILLWEELWDLENTAYLSACLLLLITAGAVICSLLFERRFWCRYLCPIGGMNGLFAKLSMTELRAQQGICVATCTTYQCYKGGPQKGEGQETEGCPLY 618          
BLAST of EWM25604.1 vs. NCBI_GenBank
Match: gi|1204967121|ref|WP_087709685.1| (AAA family ATPase [Phormidium sp. HE10JO])

HSP 1 Score: 231.876 bits (590), Expect = 5.264e-67
Identity = 115/228 (50.44%), Postives = 150/228 (65.79%), Query Frame = 0
Query:    7 NLFETVPWLRQFLRDIDWPHGLNNGFTRYIFPIYLAGLFLGPQDRDHNVLLQLFWSWWWPAIMVIYPVLGRIWCSVCPFMIYGEWAQETLKKVFPTFKLKKWPQFITQKWGPWFLYGLFVAILYWEELWDLPQNAALSAWLLLLITGGAVVTSLQYEKRLWCASLCPIGGMNGMFAKLSLLSVRTEPGLCQS-CGQYLCI-----NNEKNNKPGMPVYILESRFSFGR 228
            NLF++ P LRQFLR   W  GLN G T ++F + +  LF+GPQ RD NV L LFW+WWWP I++ +P +GR+WC+VCPFMIYGE +Q+   K+FP  +LK WP+   ++WG WFL+GLF  I  WEELW L   A LS+ LLLLIT GAV+ SL +E+R WC  LCPIGGMNG+FAKLS+  +R + G+C + C  Y C        E     G P+Y   ++    R
Sbjct:  398 NLFKSYPQLRQFLRGKFWTDGLNYGITTWVFALVVILLFVGPQTRDQNVALNLFWAWWWPLILIGFPFVGRLWCAVCPFMIYGELSQKLSLKLFPR-QLKPWPRQAAERWGGWFLFGLFALIFLWEELWHLQNTAYLSSCLLLLITAGAVIFSLLFERRFWCRYLCPIGGMNGLFAKLSMTELRAQTGICSAECTTYQCYKGGPEKGEGQETNGCPLYSHPAQLQDNR 624          
BLAST of EWM25604.1 vs. NCBI_GenBank
Match: gi|938304419|gb|KPQ37905.1| (Sigma54-dependent transcriptional regulator with 4Fe-4S-binding domain [Phormidium sp. OSCR])

HSP 1 Score: 231.876 bits (590), Expect = 5.877e-67
Identity = 115/228 (50.44%), Postives = 149/228 (65.35%), Query Frame = 0
Query:    7 NLFETVPWLRQFLRDIDWPHGLNNGFTRYIFPIYLAGLFLGPQDRDHNVLLQLFWSWWWPAIMVIYPVLGRIWCSVCPFMIYGEWAQETLKKVFPTFKLKKWPQFITQKWGPWFLYGLFVAILYWEELWDLPQNAALSAWLLLLITGGAVVTSLQYEKRLWCASLCPIGGMNGMFAKLSLLSVRTEPGLCQS-CGQYLCI-----NNEKNNKPGMPVYILESRFSFGR 228
            NLF+T P LRQFLR   W  GLN G T ++F + +  LF+GPQ RD NV L LFW+WWWP +++ +P +GR+WC+VCPFMIYGE  Q+   K+FP  +LK WP+   ++WG WFL+GLF  I  WEELW L   A LS+ LLLLIT GAV+ SL +E+R WC  LCPIGGMNG+FAKLS+  +R + G+C + C  Y C        E     G P+Y   ++    R
Sbjct:  398 NLFKTYPQLRQFLRGKFWTDGLNYGITTWVFALVVILLFVGPQTRDQNVALNLFWAWWWPLVLIGFPFVGRLWCAVCPFMIYGELTQKLSLKLFPR-QLKPWPRQAAERWGGWFLFGLFALIFLWEELWHLQNTAYLSSCLLLLITAGAVIFSLLFERRFWCRYLCPIGGMNGLFAKLSMTELRAQTGICSAECTTYQCYKGGPEKGEGQETNGCPLYSHPAQLQDNR 624          
The following BLAST results are available for this feature:
BLAST of EWM25604.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585107416|gb|EWM25604.1|0.000e+0100.00nitrogen assimilation regulatory protein, partial ... [more]
gi|504973094|ref|WP_015160196.1|1.842e-7054.13transcriptional regulator [Chamaesiphon minutus] >... [more]
gi|1027791482|ref|WP_063718157.1|1.820e-6952.75AAA family ATPase, partial [Leptolyngbya valderian... [more]
gi|515875704|ref|WP_017306287.1|3.589e-6950.44hypothetical protein [Spirulina subsalsa][more]
gi|428686165|gb|AFZ46025.1|7.586e-6851.38nitrogen assimilation regulatory protein [Cyanobac... [more]
gi|504986496|ref|WP_015173598.1|1.148e-6752.19cyclic nucleotide-binding protein [Geitlerinema sp... [more]
gi|1053971769|ref|WP_066117681.1|1.790e-6753.81AAA family ATPase [Geminocystis sp. NIES-3709] >gi... [more]
gi|1130430120|ref|WP_075598867.1|2.441e-6752.75AAA family ATPase [Oscillatoriales cyanobacterium ... [more]
gi|1204967121|ref|WP_087709685.1|5.264e-6750.44AAA family ATPase [Phormidium sp. HE10JO][more]
gi|938304419|gb|KPQ37905.1|5.877e-6750.44Sigma54-dependent transcriptional regulator with 4... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna5081rna5081Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications