rna508, rna508 (mRNA) Nannochloropsis gaditana

Overview
Namerna508
Unique Namerna508
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length659
Alignment locationCM002455.1:1274569..1276737 -

Link to JBrowse

Properties
Property NameValue
Productprotein of unknown function DUF1084
Orig transcript idgnl|cribi|Naga_100096g17.984.mrna
Orig protein idgnl|cribi|Naga_100096g17.984
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002455.1supercontigCM002455.1:1274569..1276737 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100096g17gene489Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna508rna508-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM30176.1cds508Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna508 ID=rna508|Name=rna508|organism=Nannochloropsis gaditana|type=mRNA|length=659bp
GGCCAAGCTACGTGGGTGCGGGGCGTGATGGCAAGACACGGAGGGGAGAA
TACTACAATATGTTTTTCATGTAGAGGGATGAGGTACATTTTGTGGCGAT
GTCTCGGCGACTCCCGTCAGGTTGCCTGCCTCTTGCTCTCTTATACCCCC
TTCCACCTCCTTACGGCAGTACAGGACATGGCATCGTTAAAGGACCCGAA
GGCAACCTTACATCACTGTCGAATAAGTCTCCACTTAACTAGCTCTAGTA
AGGCCCAGCTAATACAAGATGTCTTGGAAGTCGATGAGGAGCTGCAACCA
GACAAAGTTTGTAAATCATTCGCTGTGGAGGGGTCAGCGCTGAATGTGCA
TCTGGTGTCATGTGACCTGAAAGTCCTAAGGGTTGCTGTGTCCTCTTTCT
ACGACATGCTTACGGTGGCTCTTAAAACTCTGCTGCAGTTCGACAACGAA
AATGGACTTTGACAGGACTTGAGGTTCACCTCGTAACTACTTTGCTAAAC
AGGTTGGGATTCGTGGAAAACCTCCGGGGAAGGCGATGTATATATTGGTG
GAAAATCTTTCCCACGTGAAGGGCCTCGTCCGTACCTTACACGGAATTTT
GAAGCATGGAAGAACCTTCAAATTAAGCGTTAAAGAACATTCTGATCTGA
CTGATGGAC
back to top

protein sequence of rna508

>rna508-protein ID=rna508-protein|Name=rna508|organism=Nannochloropsis gaditana|type=polypeptide|length=387bp
MPETVAEKVQDLVMACLFTLIAVVALVKCRRVIILEGAETAIKTFYFLIF
GAAALRAVWFFIPSDVLEPSYAPAEVWAFQTPHWAGTLVSEILLSGGTLC
LFAIFVLIIIYWADLLKKVFKPVRKHEPMTTFLSIMGSLAAFEVANFALF
LAGIYSSQVMTLLDSIMLALVSMACVVEISIFSHRFRTVLTTLGAINQVP
TDSQVRTIIWITVFGNVFFVLRAMVELFLAATFIALWRAHKPLSSLATPR
NHFWDVYVLIKHSLELMILFLMLYTLQSRRTAHHHHVPPAHPVSHPQGIG
AGSSLRSAAGGGGGSGSGASYLSMASTGNKPPNRSEYTEVKDLDAARGGR
AGNGGRAPGFLSSGGGQGRPFAGGGIVKTAVRGTEMA
back to top

mRNA from alignment at CM002455.1:1274569..1276737-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna508 ID=rna508|Name=rna508|organism=Nannochloropsis gaditana|type=mRNA|length=2169bp|location=Sequence derived from alignment at CM002455.1:1274569..1276737- (Nannochloropsis gaditana)
GCTGGCGACTTATATATGAGTTGTGGCCTTTTATGAGTCTCGGTGGCGCG
TTTCGTGGTCAGGCAGACAAGCCTCTTGAGCAGGGTCCAGTGTGCACGAC
CCTCATGCCTTACTTTGTTCCATGCACTCCGTCGCTCTTCTTTGTCCGTA
CTCAATCACCCAGGCGAATAGTACAGCCGTGTTGCCGCCCTTACTTTTTG
TCCGTCAGGCGCTCGACCGCTCGTCCGTCAGTTGGCCCGGGCTTGCAATT
TCCGTCAAGTTTGTTCTGCTCCCTGTCCTTCAAACGCACTATCAGCAGTC
ATTGTCGGGCACCATCAGCATCCTCCGCACCCAGTAGCAAGTAACATCCT
GAGAAAGCTCTGTCCTCGTCATGCCTGAGACCGTGGCAGAGAAGGTACAG
GACCTGGTAATGGCATGCCTGTTCACCCTAATTGCCGTGGTCGCCTTGGT
GAAATGTCGTAGGGTCATCATTTTGGAGGGCGCAGAGGTACGTGTTAGGA
TGAAAAGCTTGCAGTCTCCAGTCTTTCGTGACGCACCAGGGTACTTGCGC
TGCTTTGCTGAGATGTCTTTTGCCGCATGTTTTCCCGTTTCTACTTAATT
CTAAGTACTAGTAAAATTGTTTTCCCCCGCTCTCTTCCTCTGACAGACTG
CCATCAAAACCTTCTACTTCCTTATTTTTGGCGCCGCTGCCTTACGAGCC
GTGTGGTTTTTCATACCCTCCGACGTCCTGGAGCCTTCCTACGCGCCCGC
CGAAGTTTGGGCCTTCCAAACTCCTCATTGGGCGGGTACGCTGGTGTCGG
AAATACTCCTCTCAGGGGGAACCTTGTGCCTATTCGCCATTTTTGTCTTG
ATCATCATTTATTGGGCAGATTTGTTGAAGAAGGTTTTCAAACCGGTGCG
AAAACATGAACCCATGACGACTTTTCTGAGCATCATGGGTAGCCTCGCTG
CCTTTGAAGTTGCGAATTTCGCGCTGTTTCTGGCCGGCATCTACTCTTCC
CAGGTCATGACGCTGTTGGACTCGATCATGCTAGCCCTCGTCTCCATGGC
GTGCGTGGTGGAAATCTCCATTTTCTCGCACCGTTTTCGGACGGTGTTGA
CGACCCTGGGTGCCATCAACCAAGTGCCCACGGACTCCCAGGTACGGACC
ATTATCTGGATCACCGTCTTCGGGAACGTCTTCTTTGTCCTCCGGGCGAT
GGTCGAGCTTTTTCTGGCCGCCACCTTCATTGCCTTGTGGCGCGCCCACA
AGCCCCTGAGCTCCCTGGCCACCCCCCGGAACCACTTTTGGGACGTGTAC
GTGCTGATCAAGCACAGCTTGGAGCTGATGATCCTCTTCTTGATGCTGTA
CACCCTCCAGTCGCGGAGGACGGCGCACCACCACCACGTGCCCCCGGCCC
ATCCTGTCTCGCACCCACAAGGCATAGGAGCTGGAAGCAGTCTGAGGAGT
GCGGCAGGGGGGGGAGGGGGGTCGGGCTCAGGGGCCTCGTATCTGTCGAT
GGCGTCCACGGGGAACAAACCACCAAATCGGAGCGAGTACACCGAGGTGA
AAGACTTGGATGCGGCGCGTGGGGGAAGGGCTGGGAACGGAGGGCGGGCC
CCGGGATTTTTGTCCTCGGGAGGAGGCCAGGGAAGGCCTTTCGCGGGCGG
TGGGATTGTAAAAACAGCCGTCAGGGGGACTGAGATGGCCTGAGGAAGGG
CATGGCTGATAGAACCAAAATGCCGAGTTTTTTCCGTGGATGGCATGGGC
GCGGGTACAAGCACTGTAGGGAAAATCATTGCTAGTTTTTACCCTTGATA
CTAATGCTGAGATTTAAAGCCGAACGAACGTTGTCGTCACTGAGTCCGTA
AGGTCCGGCGGGGGAGGAGCGTCAAGGCGCCACTGTACAAAAGAAAGCCC
CAAAGTACACACAACCGGGGCAAGTATGGGTAAAGGCGGGGAGCAACAAG
GGTATTTGAAATAAAGCATTTAAAGGAGAAATGAATTGGAAAGAGAAAGT
AAAACAGTTGTGTTCGCCACCAAGAAATTTGGTGTCCGGCATGGGAGGTC
CGTCATCGTGTTACAGATCAAAGGAAGACCCCATGATCTTTGAGAACGAA
CAAGCATTGAATCCGAGCAACTCACTCAGCGTCCATCAGTCAGATCAGAA
TGTTCTTTAACGCTTAATT
back to top

Coding sequence (CDS) from alignment at CM002455.1:1274569..1276737-

>rna508 ID=rna508|Name=rna508|organism=Nannochloropsis gaditana|type=CDS|length=2328bp|location=Sequence derived from alignment at CM002455.1:1274569..1276737- (Nannochloropsis gaditana)
ACTGCCATCAAAACCTTCTACTTCCTTATTTTTGGCGCCGCTGCCTTACG
AGCCGTGTGGTTTTTCATACCCTCCGACGTCCTGGAGCCTTCCTACGCGC
CCGCCGAAGTTTGGGCCTTCCAAACTCCTCATTGGGCGGGTACGCTGGTG
TCGGAAATACTCCTCTCAGGGGGAACCTTGTGCCTATTCGCCATTTTTGT
CTTGATCATCATTTATTGGGCAGATTTGTTGAAGAAGGTTTTCAAACCGG
TGCGAAAACATGAACCCATGACGACTTTTCTGAGCATCATGGGTAGCCTC
GCTGCCTTTGAAGTTGCGAATTTCGCGCTGTTTCTGGCCGGCATCTACTC
TTCCCAGGTCATGACGCTGTTGGACTCGATCATGCTAGCCCTCGTCTCCA
TGGCGTGCGTGGTGGAAATCTCCATTTTCTCGCACCGTTTTCGGACGGTG
TTGACGACCCTGGGTGCCATCAACCAAGTGCCCACGGACTCCCAGGTACG
GACCATTATCTGGATCACCGTCTTCGGGAACGTCTTCTTTGTCCTCCGGG
CGATGGTCGAGCTTTTTCTGGCCGCCACCTTCATTGCCTTGTGGCGCGCC
CACAAGCCCCTGAGCTCCCTGGCCACCCCCCGGAACCACTTTTGGGACGT
GTACGTGCTGATCAAGCACAGCTTGGAGCTGATGATCCTCTTCTTGATGC
TGTACACCCTCCAGTCGCGGAGGACGGCGCACCACCACCACGTGCCCCCG
GCCCATCCTGTCTCGCACCCACAAGGCATAGGAGCTGGAAGCAGTCTGAG
GAGTGCGGCAGGGGGGGGAGGGGGGTCGGGCTCAGGGGCCTCGTATCTGT
CGATGGCGTCCACGGGGAACAAACCACCAAATCGGAGCGAGTACACCGAG
GTGAAAGACTTGGATGCGGCGCGTGGGGGAAGGGCTGGGAACGGAGGGCG
GGCCCCGGGATTTTTGTCCTCGGGAGGAGGCCAGGGAAGGCCTTTCGCGG
GCGGTGGGATTGTAAAAACAGCCGTCAGGGGGACTGAGATGGCCTGAATG
CCTGAGACCGTGGCAGAGAAGGTACAGGACCTGGTAATGGCATGCCTGTT
CACCCTAATTGCCGTGGTCGCCTTGGTGAAATGTCGTAGGGTCATCATTT
TGGAGGGCGCAGAGACTGCCATCAAAACCTTCTACTTCCTTATTTTTGGC
GCCGCTGCCTTACGAGCCGTGTGGTTTTTCATACCCTCCGACGTCCTGGA
GCCTTCCTACGCGCCCGCCGAAGTTTGGGCCTTCCAAACTCCTCATTGGG
CGGGTACGCTGGTGTCGGAAATACTCCTCTCAGGGGGAACCTTGTGCCTA
TTCGCCATTTTTGTCTTGATCATCATTTATTGGGCAGATTTGTTGAAGAA
GGTTTTCAAACCGGTGCGAAAACATGAACCCATGACGACTTTTCTGAGCA
TCATGGGTAGCCTCGCTGCCTTTGAAGTTGCGAATTTCGCGCTGTTTCTG
GCCGGCATCTACTCTTCCCAGGTCATGACGCTGTTGGACTCGATCATGCT
AGCCCTCGTCTCCATGGCGTGCGTGGTGGAAATCTCCATTTTCTCGCACC
GTTTTCGGACGGTGTTGACGACCCTGGGTGCCATCAACCAAGTGCCCACG
GACTCCCAGGTACGGACCATTATCTGGATCACCGTCTTCGGGAACGTCTT
CTTTGTCCTCCGGGCGATGGTCGAGCTTTTTCTGGCCGCCACCTTCATTG
CCTTGTGGCGCGCCCACAAGCCCCTGAGCTCCCTGGCCACCCCCCGGAAC
CACTTTTGGGACGTGTACGTGCTGATCAAGCACAGCTTGGAGCTGATGAT
CCTCTTCTTGATGCTGTACACCCTCCAGTCGCGGAGGACGGCGCACCACC
ACCACGTGCCCCCGGCCCATCCTGTCTCGCACCCACAAGGCATAGGAGCT
GGAAGCAGTCTGAGGAGTGCGGCAGGGGGGGGAGGGGGGTCGGGCTCAGG
GGCCTCGTATCTGTCGATGGCGTCCACGGGGAACAAACCACCAAATCGGA
GCGAGTACACCGAGGTGAAAGACTTGGATGCGGCGCGTGGGGGAAGGGCT
GGGAACGGAGGGCGGGCCCCGGGATTTTTGTCCTCGGGAGGAGGCCAGGG
AAGGCCTTTCGCGGGCGGTGGGATTGTAAAAACAGCCGTCAGGGGGACTG
AGATGGCCTGAATGCCTGAGACCGTGGCAGAGAAGGTACAGGACCTGGTA
ATGGCATGCCTGTTCACCCTAATTGCCGTGGTCGCCTTGGTGAAATGTCG
TAGGGTCATCATTTTGGAGGGCGCAGAG
back to top
Synonyms
Publications