rna5078, rna5078 (mRNA) Nannochloropsis gaditana

Overview
Namerna5078
Unique Namerna5078
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length547
Alignment locationCM002465.1:53600..56189 +

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Properties
Property NameValue
Productset domain containing protein
Orig transcript idgnl|cribi|Naga_101047g2.5281.mrna
Orig protein idgnl|cribi|Naga_101047g2.5281
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002465.1supercontigCM002465.1:53600..56189 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_101047g2gene4902Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna5078rna5078-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM25607.1cds5066Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna5078 ID=rna5078|Name=rna5078|organism=Nannochloropsis gaditana|type=mRNA|length=547bp
CCCCTTCCCCTCTCCCACCCCACATCCTAGGCACTGGGGACGTCACTGGC
CGCCATGGTCCCTACGGCCCTGGTTGGCACTCACTCGCACCATGCACAAG
GGCATGTGGTCTGGTCGTTTGTGGCTCCGCTGGCTGTGGGCTCTCTGTGC
GGGAGCTTCTTGGGGGGGAAAGAGATCGCAATGCAGATTCCTGAAAATTA
CTTGAAGTGGGGCTTTGGGATTATGATGGTCGTGCTAGGGAGCAAAACCA
TTTATTCTGCTGGACCGTTGAAAAGCATGGCCCTATCGGCATCAAAGGCC
AAGTGAAGCAGATGAGGGAAAACCTATATAAAAGAGGAGGGATTTAATGG
GAGAAAAGAAGGAGAATGGGGATTACAGTGGAAAATGTGCATAACTTTTA
AATTGGATGAATTGAAATGTATGTAAGGGATTAAAGAGTTAGATGTCGAA
ATCGATTATTAAAGGGAAAAATTGTTGGTGCAAGGTCAGGGGGTAAGGAG
GTTAACTGGCACACCAAAAGCAAACAAATAGCAACGCGTACTTGTTT
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protein sequence of rna5078

>rna5078-protein ID=rna5078-protein|Name=rna5078|organism=Nannochloropsis gaditana|type=polypeptide|length=297bp
MQLDAGVSSSGGTADESAVNKYDRFLKWLLDNGAHFPLLELREYESDVRG
VHAKEALAGDQVVVEIPLRCLITVEMGKESDVGKAVLASNLPLDAPKHIF
LMLFMLTDRRNPSSFFKPYYDILPSSLSNMPIFWTDEELAYLKGSHLLTQ
IEERKRAIEADYAAIADVAPSLPSICSVEEFKWARMCVCSRNFGLEVNRI
RTAALVPYADMLNHQRPRETKWTFDNARQAFTITTLQPIAPGAQVYDSYG
QKCNHRFLLNYGFAVENNREADNFCPNEVGLWQERARKGERERGTMG
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mRNA from alignment at CM002465.1:53600..56189+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna5078 ID=rna5078|Name=rna5078|organism=Nannochloropsis gaditana|type=mRNA|length=2590bp|location=Sequence derived from alignment at CM002465.1:53600..56189+ (Nannochloropsis gaditana)
ACATTGTGTCAACATGCTGGTTTCATTTCCACAGCTTTTGCAGTCATCGA TCTTGTCCACAACGATAATTTTCCAGGCAGGGCGGTGGCTCGGAGGGGAG GCATACTGCTTCACTTTTGGCTGTTTTGGCATTAAATTTGTCCTGCCATT TCTACATCATCCTTGATACGGCTGCTACATTAAGAAATTAAGTAGAGGTG TACAACGCCGTAGACGAAGCATGCAACTGGATGCGGGAGTGAGCAGCAGT GGAGGTATGGCGGGGGtgcaagggggagggtggataAGCGGCAAAAGGGG CTAGAAATACCGAAAAAACGATGACTGAACCCACTGGATTTTTCTAGTCT CCTACGGTCATATCTAGATACTAGATGGCTAGAGGCGCAAAATTTCAGGC TGACGCCTTACTTTCATCGAATGCTTGCAACCCGCTCGCCACACAGGTAC CGCAGACGAGTCCGCTGTCAACAAATACGACCGGTTCTTAAAATGGCTTT TGGACAACGGCGCACACTTTCCTCTACTAGAATTGAGGGTATGGAAATTT GTAGACAGAGTTTGGGCAGGACAATATATCAGGGGGATCTCGTTTCAATA TCTACATGCTACgagccctccttcgcttaCCGATGTTTTCATGCCGCTTT TAGTCCCCCCACCTTGTCGGCCTTTGCGTGCTAAGAACACTTCTTTGTTT GTATCATTTAGATTTGAAAGCTTGTCCCTCATttctgcttcctcgcccct ccccttgattCCTTTTGTCCCGTGGCTCTAAGCCTCgattcccctcttcc ccccctcatcTATACACCCACATCATCCGattccatctccttcccacctc ctcttgcaCCTCTTTGTATCCTCATTTTCTCAGGAGTACGAATCCGACGT CCGCGGGGTGCACgcgaaggaggcgctggcaggCGatcaggtgagggagg gagggagagaggaagggaaggagggagagaagggagggagtcccTTTCTT ATAAGCAAGCGAGGCGATAAACAGACGCTTGCTCAGAGTGGCAAGccatt tcccttcctcaggtggtggtggaaatTCCCCTCCGGTGCCTGATCACGGt ggagatggggaaggagtcCGACGTGGGAAAAGCGGTGCTCGCGTCCAATT TGCCCCTGGACGCACCCAAGCACATCTTCTTGATGCTCTTCATGCTCACG GACAGGCGgaacccgtcctccttctttaaGGTGCGccggtgtttctcgta ccgCTCTCCTTCGGTGCCCCTCGAGCCAGTAGTCTGCTCAGATCACGGGG CTCCgttgccctctctccacaTGGCTCTATGTCGCTCTGCCCTGCCGAAG CCCCTTTATATCTCTCGCACGGGTCCACCCTTCTCACTGCTAAGCCTtcg atgcctccctcttacctttccttctcctgtaTTTCCCCTGATAGCCCTAC TACGatatccttccctcctccttgtcgaaCATGCCGATCTTCTGGACGGA TGAGGAACTGGCTTACCTgaaaggtgaaggaggaaggaagaaggaagcaa gggaggagtggaCGGGAAAAATTGGAAATAGAAGGGATTgggcaggagaa gatgagaaaTCGATCAGAGGAACACCTTGCCTCCTTTCGTCTCACGTTCT ATCCTGAATCCTTGACTCATTGCAAACACTCTCTCACccattctctccct ctccctccttccctccctccttccccctcctccttccctcccttcgccag GCTCCCACCTCCTGACCCAGATCGAGGAACGGAAGCGTGCCATTGAAGCC GACTACGCGGCCATCGCCGACGtggctccctctctcccctccatctGCTC AGTGGAGGAGTTCAAGTGGGCCCGTATGTGCGTCTgttcgcgcaattttg gTCTGGAGGTGAACAGAATCAGGACGGCGGCCTTGGTCCCCTACGCAGgt agccctccccccctcctttccttggtCGCCTCCTTTTTTCGTCCCCTTCC GAAGGCTTGGGAAGAGTGTTTAAATCTTTTAAGGATCCTTATGTACTATG GATTACACTACCTTTCTAACCCCCCACGTTCCCTTCGCCTTGCCAGATAT GCTCAACCACCAGCGGCCCCGCGAAACCAAGTGGACCTTCGACAACGCTC GTCAGGCTTTTACTATCACGACGCTCCAGCCCATCGCCCCCGGGGCCCAG GTGCCtcaccttgccctccctccaccgcaccctgctccgcttcttcccac cctcctttcccgcgtCGACGCACTATCACATCGGCCATGTCTTATGCGCC GCATCACCTACCAGGGATACTCAGACGCTTGCACgcaattttcttcctcc ctttctcactCTTATTGCACCTTAGGTCTATGATTCATACGGCCAGAAGT GTAAccaccgcttccttctcAACTACGGTTTCGCCGTGGAAAATAACAGA GAAGCAGATAATTTCTGTCCAAACGAGGTCGGGTTGTGgcaggagagagc gaggaagggggagagggaaagaggtaCAATGGGATGATTCCCGCACGAAA ATTGTAGCACTTAAAAGAATTGTTctccctaccctcctcc
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Coding sequence (CDS) from alignment at CM002465.1:53600..56189+

>rna5078 ID=rna5078|Name=rna5078|organism=Nannochloropsis gaditana|type=CDS|length=7152bp|location=Sequence derived from alignment at CM002465.1:53600..56189+ (Nannochloropsis gaditana)
ATGCAACTGGATGCGGGAGTGAGCAGCAGTGGAGGTACCGCAGACGAGTC
CGCTGTCAACAAATACGACCGGTTCTTAAAATGGCTTTTGGACAACGGCG
CACACTTTCCTCTACTAGAATTGAGGGAGTACGAATCCGACGTCCGCGGG
GTGCACgcgaaggaggcgctggcaggCGatcaggtggtggtggaaatTCC
CCTCCGGTGCCTGATCACGGtggagatggggaaggagtcCGACGTGGGAA
AAGCGGTGCTCGCGTCCAATTTGCCCCTGGACGCACCCAAGCACATCTTC
TTGATGCTCTTCATGCTCACGGACAGGCGgaacccgtcctccttctttaa
GCCCTACTACGatatccttccctcctccttgtcgaaCATGCCGATCTTCT
GGACGGATGAGGAACTGGCTTACCTgaaagGCTCCCACCTCCTGACCCAG
ATCGAGGAACGGAAGCGTGCCATTGAAGCCGACTACGCGGCCATCGCCGA
CGtggctccctctctcccctccatctGCTCAGTGGAGGAGTTCAAGTGGG
CCCGTATGTGCGTCTgttcgcgcaattttggTCTGGAGGTGAACAGAATC
AGGACGGCGGCCTTGGTCCCCTACGCAGATATGCTCAACCACCAGCGGCC
CCGCGAAACCAAGTGGACCTTCGACAACGCTCGTCAGGCTTTTACTATCA
CGACGCTCCAGCCCATCGCCCCCGGGGCCCAGGTCTATGATTCATACGGC
CAGAAGTGTAAccaccgcttccttctcAACTACGGTTTCGCCGTGGAAAA
TAACAGAGAAGCAGATAATTTCTGTCCAAACGAGGTCGGGTTGTGgcagg
agagagcgaggaagggggagagggaaagaggtaCAATGGGATGAATGCAA
CTGGATGCGGGAGTGAGCAGCAGTGGAGGTACCGCAGACGAGTCCGCTGT
CAACAAATACGACCGGTTCTTAAAATGGCTTTTGGACAACGGCGCACACT
TTCCTCTACTAGAATTGAGGGAGTACGAATCCGACGTCCGCGGGGTGCAC
gcgaaggaggcgctggcaggCGatcaggtggtggtggaaatTCCCCTCCG
GTGCCTGATCACGGtggagatggggaaggagtcCGACGTGGGAAAAGCGG
TGCTCGCGTCCAATTTGCCCCTGGACGCACCCAAGCACATCTTCTTGATG
CTCTTCATGCTCACGGACAGGCGgaacccgtcctccttctttaaGCCCTA
CTACGatatccttccctcctccttgtcgaaCATGCCGATCTTCTGGACGG
ATGAGGAACTGGCTTACCTgaaagGCTCCCACCTCCTGACCCAGATCGAG
GAACGGAAGCGTGCCATTGAAGCCGACTACGCGGCCATCGCCGACGtggc
tccctctctcccctccatctGCTCAGTGGAGGAGTTCAAGTGGGCCCGTA
TGTGCGTCTgttcgcgcaattttggTCTGGAGGTGAACAGAATCAGGACG
GCGGCCTTGGTCCCCTACGCAGATATGCTCAACCACCAGCGGCCCCGCGA
AACCAAGTGGACCTTCGACAACGCTCGTCAGGCTTTTACTATCACGACGC
TCCAGCCCATCGCCCCCGGGGCCCAGGTCTATGATTCATACGGCCAGAAG
TGTAAccaccgcttccttctcAACTACGGTTTCGCCGTGGAAAATAACAG
AGAAGCAGATAATTTCTGTCCAAACGAGGTCGGGTTGTGgcaggagagag
cgaggaagggggagagggaaagaggtaCAATGGGATGAATGCAACTGGAT
GCGGGAGTGAGCAGCAGTGGAGGTACCGCAGACGAGTCCGCTGTCAACAA
ATACGACCGGTTCTTAAAATGGCTTTTGGACAACGGCGCACACTTTCCTC
TACTAGAATTGAGGGAGTACGAATCCGACGTCCGCGGGGTGCACgcgaag
gaggcgctggcaggCGatcaggtggtggtggaaatTCCCCTCCGGTGCCT
GATCACGGtggagatggggaaggagtcCGACGTGGGAAAAGCGGTGCTCG
CGTCCAATTTGCCCCTGGACGCACCCAAGCACATCTTCTTGATGCTCTTC
ATGCTCACGGACAGGCGgaacccgtcctccttctttaaGCCCTACTACGa
tatccttccctcctccttgtcgaaCATGCCGATCTTCTGGACGGATGAGG
AACTGGCTTACCTgaaagGCTCCCACCTCCTGACCCAGATCGAGGAACGG
AAGCGTGCCATTGAAGCCGACTACGCGGCCATCGCCGACGtggctccctc
tctcccctccatctGCTCAGTGGAGGAGTTCAAGTGGGCCCGTATGTGCG
TCTgttcgcgcaattttggTCTGGAGGTGAACAGAATCAGGACGGCGGCC
TTGGTCCCCTACGCAGATATGCTCAACCACCAGCGGCCCCGCGAAACCAA
GTGGACCTTCGACAACGCTCGTCAGGCTTTTACTATCACGACGCTCCAGC
CCATCGCCCCCGGGGCCCAGGTCTATGATTCATACGGCCAGAAGTGTAAc
caccgcttccttctcAACTACGGTTTCGCCGTGGAAAATAACAGAGAAGC
AGATAATTTCTGTCCAAACGAGGTCGGGTTGTGgcaggagagagcgagga
agggggagagggaaagaggtaCAATGGGATGAATGCAACTGGATGCGGGA
GTGAGCAGCAGTGGAGGTACCGCAGACGAGTCCGCTGTCAACAAATACGA
CCGGTTCTTAAAATGGCTTTTGGACAACGGCGCACACTTTCCTCTACTAG
AATTGAGGGAGTACGAATCCGACGTCCGCGGGGTGCACgcgaaggaggcg
ctggcaggCGatcaggtggtggtggaaatTCCCCTCCGGTGCCTGATCAC
GGtggagatggggaaggagtcCGACGTGGGAAAAGCGGTGCTCGCGTCCA
ATTTGCCCCTGGACGCACCCAAGCACATCTTCTTGATGCTCTTCATGCTC
ACGGACAGGCGgaacccgtcctccttctttaaGCCCTACTACGatatcct
tccctcctccttgtcgaaCATGCCGATCTTCTGGACGGATGAGGAACTGG
CTTACCTgaaagGCTCCCACCTCCTGACCCAGATCGAGGAACGGAAGCGT
GCCATTGAAGCCGACTACGCGGCCATCGCCGACGtggctccctctctccc
ctccatctGCTCAGTGGAGGAGTTCAAGTGGGCCCGTATGTGCGTCTgtt
cgcgcaattttggTCTGGAGGTGAACAGAATCAGGACGGCGGCCTTGGTC
CCCTACGCAGATATGCTCAACCACCAGCGGCCCCGCGAAACCAAGTGGAC
CTTCGACAACGCTCGTCAGGCTTTTACTATCACGACGCTCCAGCCCATCG
CCCCCGGGGCCCAGGTCTATGATTCATACGGCCAGAAGTGTAAccaccgc
ttccttctcAACTACGGTTTCGCCGTGGAAAATAACAGAGAAGCAGATAA
TTTCTGTCCAAACGAGGTCGGGTTGTGgcaggagagagcgaggaaggggg
agagggaaagaggtaCAATGGGATGAATGCAACTGGATGCGGGAGTGAGC
AGCAGTGGAGGTACCGCAGACGAGTCCGCTGTCAACAAATACGACCGGTT
CTTAAAATGGCTTTTGGACAACGGCGCACACTTTCCTCTACTAGAATTGA
GGGAGTACGAATCCGACGTCCGCGGGGTGCACgcgaaggaggcgctggca
ggCGatcaggtggtggtggaaatTCCCCTCCGGTGCCTGATCACGGtgga
gatggggaaggagtcCGACGTGGGAAAAGCGGTGCTCGCGTCCAATTTGC
CCCTGGACGCACCCAAGCACATCTTCTTGATGCTCTTCATGCTCACGGAC
AGGCGgaacccgtcctccttctttaaGCCCTACTACGatatccttccctc
ctccttgtcgaaCATGCCGATCTTCTGGACGGATGAGGAACTGGCTTACC
TgaaagGCTCCCACCTCCTGACCCAGATCGAGGAACGGAAGCGTGCCATT
GAAGCCGACTACGCGGCCATCGCCGACGtggctccctctctcccctccat
ctGCTCAGTGGAGGAGTTCAAGTGGGCCCGTATGTGCGTCTgttcgcgca
attttggTCTGGAGGTGAACAGAATCAGGACGGCGGCCTTGGTCCCCTAC
GCAGATATGCTCAACCACCAGCGGCCCCGCGAAACCAAGTGGACCTTCGA
CAACGCTCGTCAGGCTTTTACTATCACGACGCTCCAGCCCATCGCCCCCG
GGGCCCAGGTCTATGATTCATACGGCCAGAAGTGTAAccaccgcttcctt
ctcAACTACGGTTTCGCCGTGGAAAATAACAGAGAAGCAGATAATTTCTG
TCCAAACGAGGTCGGGTTGTGgcaggagagagcgaggaagggggagaggg
aaagaggtaCAATGGGATGAATGCAACTGGATGCGGGAGTGAGCAGCAGT
GGAGGTACCGCAGACGAGTCCGCTGTCAACAAATACGACCGGTTCTTAAA
ATGGCTTTTGGACAACGGCGCACACTTTCCTCTACTAGAATTGAGGGAGT
ACGAATCCGACGTCCGCGGGGTGCACgcgaaggaggcgctggcaggCGat
caggtggtggtggaaatTCCCCTCCGGTGCCTGATCACGGtggagatggg
gaaggagtcCGACGTGGGAAAAGCGGTGCTCGCGTCCAATTTGCCCCTGG
ACGCACCCAAGCACATCTTCTTGATGCTCTTCATGCTCACGGACAGGCGg
aacccgtcctccttctttaaGCCCTACTACGatatccttccctcctcctt
gtcgaaCATGCCGATCTTCTGGACGGATGAGGAACTGGCTTACCTgaaag
GCTCCCACCTCCTGACCCAGATCGAGGAACGGAAGCGTGCCATTGAAGCC
GACTACGCGGCCATCGCCGACGtggctccctctctcccctccatctGCTC
AGTGGAGGAGTTCAAGTGGGCCCGTATGTGCGTCTgttcgcgcaattttg
gTCTGGAGGTGAACAGAATCAGGACGGCGGCCTTGGTCCCCTACGCAGAT
ATGCTCAACCACCAGCGGCCCCGCGAAACCAAGTGGACCTTCGACAACGC
TCGTCAGGCTTTTACTATCACGACGCTCCAGCCCATCGCCCCCGGGGCCC
AGGTCTATGATTCATACGGCCAGAAGTGTAAccaccgcttccttctcAAC
TACGGTTTCGCCGTGGAAAATAACAGAGAAGCAGATAATTTCTGTCCAAA
CGAGGTCGGGTTGTGgcaggagagagcgaggaagggggagagggaaagag
gtaCAATGGGATGAATGCAACTGGATGCGGGAGTGAGCAGCAGTGGAGGT
ACCGCAGACGAGTCCGCTGTCAACAAATACGACCGGTTCTTAAAATGGCT
TTTGGACAACGGCGCACACTTTCCTCTACTAGAATTGAGGGAGTACGAAT
CCGACGTCCGCGGGGTGCACgcgaaggaggcgctggcaggCGatcaggtg
gtggtggaaatTCCCCTCCGGTGCCTGATCACGGtggagatggggaagga
gtcCGACGTGGGAAAAGCGGTGCTCGCGTCCAATTTGCCCCTGGACGCAC
CCAAGCACATCTTCTTGATGCTCTTCATGCTCACGGACAGGCGgaacccg
tcctccttctttaaGCCCTACTACGatatccttccctcctccttgtcgaa
CATGCCGATCTTCTGGACGGATGAGGAACTGGCTTACCTgaaagGCTCCC
ACCTCCTGACCCAGATCGAGGAACGGAAGCGTGCCATTGAAGCCGACTAC
GCGGCCATCGCCGACGtggctccctctctcccctccatctGCTCAGTGGA
GGAGTTCAAGTGGGCCCGTATGTGCGTCTgttcgcgcaattttggTCTGG
AGGTGAACAGAATCAGGACGGCGGCCTTGGTCCCCTACGCAGATATGCTC
AACCACCAGCGGCCCCGCGAAACCAAGTGGACCTTCGACAACGCTCGTCA
GGCTTTTACTATCACGACGCTCCAGCCCATCGCCCCCGGGGCCCAGGTCT
ATGATTCATACGGCCAGAAGTGTAAccaccgcttccttctcAACTACGGT
TTCGCCGTGGAAAATAACAGAGAAGCAGATAATTTCTGTCCAAACGAGGT
CGGGTTGTGgcaggagagagcgaggaagggggagagggaaagaggtaCAA
TGGGATGAATGCAACTGGATGCGGGAGTGAGCAGCAGTGGAGGTACCGCA
GACGAGTCCGCTGTCAACAAATACGACCGGTTCTTAAAATGGCTTTTGGA
CAACGGCGCACACTTTCCTCTACTAGAATTGAGGGAGTACGAATCCGACG
TCCGCGGGGTGCACgcgaaggaggcgctggcaggCGatcaggtggtggtg
gaaatTCCCCTCCGGTGCCTGATCACGGtggagatggggaaggagtcCGA
CGTGGGAAAAGCGGTGCTCGCGTCCAATTTGCCCCTGGACGCACCCAAGC
ACATCTTCTTGATGCTCTTCATGCTCACGGACAGGCGgaacccgtcctcc
ttctttaaGCCCTACTACGatatccttccctcctccttgtcgaaCATGCC
GATCTTCTGGACGGATGAGGAACTGGCTTACCTgaaagGCTCCCACCTCC
TGACCCAGATCGAGGAACGGAAGCGTGCCATTGAAGCCGACTACGCGGCC
ATCGCCGACGtggctccctctctcccctccatctGCTCAGTGGAGGAGTT
CAAGTGGGCCCGTATGTGCGTCTgttcgcgcaattttggTCTGGAGGTGA
ACAGAATCAGGACGGCGGCCTTGGTCCCCTACGCAGATATGCTCAACCAC
CAGCGGCCCCGCGAAACCAAGTGGACCTTCGACAACGCTCGTCAGGCTTT
TACTATCACGACGCTCCAGCCCATCGCCCCCGGGGCCCAGGTCTATGATT
CATACGGCCAGAAGTGTAAccaccgcttccttctcAACTACGGTTTCGCC
GTGGAAAATAACAGAGAAGCAGATAATTTCTGTCCAAACGAGGTCGGGTT
GTGgcaggagagagcgaggaagggggagagggaaagaggtaCAATGGGAT
GA
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Synonyms
Publications