rna5076, rna5076 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna5076
Unique Name	rna5076
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	3449
Alignment location	CM002465.1:50244..52033 +

Link to JBrowse

Properties


Property Name	Value
Product	hypothetical protein
Orig transcript id	gnl\|cribi\|Naga_100544g3.3244.mrna
Orig protein id	gnl\|cribi\|Naga_100544g3.3244
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002465.1	supercontig	CM002465.1:50244..52033 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100544g3	gene4900	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna5076	rna5076-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM25610.1	cds5064	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002465.1:50244..52033+
coding sequence from alignment at CM002465.1:50244..52033+

mRNA sequence

>rna5076 ID=rna5076|Name=rna5076|organism=Nannochloropsis gaditana|type=mRNA|length=3449bp
AGTTCGCCATGCGTTGAACACGGAGGAGGTTGAGCTGCCCCCATATGTTA
CAAAACTGGAGCTGATACGCTTGTGACACTCAGCAAAAGCATGTGGCACA
CTCTGACAAAACCGGCTATTACGCGAGTTATCCTGGCACTTTTTGGCAAA
CAAACAGTAACACTACGGTATAGGAGCACAGACAAAAAGTAAGGACTGCA
AGCGGCGTGAGGTTTGGAACGGGCATTTAGGATGGACGCTTTGGGGGAGG
AACAGAGTCTCGCGAACGTATTTCATGACTCATCTCTTTGGGAAAAATAA
CTATGTTATAACCGTCATGAGGGCGGTGATTGAAGAAAAGGTGTTTGAGT
GCCATCTGATTGGGGACCGTGTCTTACGAAAAGTGATCCGCGATGGGAAC
GTGATAAAATGTACGAGGAAAACGTATTGAAGGATGGTGATTGAACCACA
ATGGACTCGCATCCTTATAGGTTGCATCTATAATACAATAGCAAGTATGA
AAAACCCTCAGATAGTGGCGTGCAAATAGAATGCCTACTCTCAACATGTA
ACTGTTTTTCCTAGTCCAGCTACAGGTAACATTTTGTTGAGCGGGACATT
GCTAGAAAATTGCTCTAATTCCGAAGTATATTTAAATAGCATAGAAGTGA
AAGGTTTTTGACTCTGTGGTGTGCATGAAGGGACGGACGACGGCTGTGAG
GTGTACATGTGGGGACAGTAGAAGAGAAGTGCCTGCAAGAGTCGGGATCG
TCATATCCAGACTTGCGGAACAGCACCATAGCTATCCTTCTGACTTGCGT
TTCCTAATCCTCAGTCAGCATCAATAGGCACAAACACATTGGGAGAATCG
ACATATGCAGGTGTTGGGGCAGGAGTATGCCCTCCGGCCTGTCTTCTCCC
TCTGAGTCCTTCTTTCAACCGGACAGATTGCTGTGGAAGAGGAATGTGCC
ATGGCCGATAGTGATTTCACATGTTTGAATTTCGAGGAAGTCATAATCCC
TTGGCTTGAGTGGTTGAAGCGGACGGGCCGGGCAAGAGCTCCCAAAACAC
GGAACTTATATAGACAGTACGTGACGGATCTAACATTACAGGTTGCCATG
GATAATTTGCATGACGAGGACTTGCCTTGTCTGGGCAGGGAGGCTGTAGA
AGGCTTTGCGGTGGAGAATGAGTCACACTTGGCCGCATTGGCGGCAGACC
AGTCTCAGGCCGGGTACTGGCATGCCTGGGGTCATTTCTGGCACTGGCTA
CAGGGAGACGCCAGGAGGGAGGGTCCATGCGCTTCGGAACCACAAGGAGG
AGGGGAGATAGGGGGGGAGGGAGGAGAGGAGGAAGAAGGAAGGAAAGGCC
AATGGGCAGGAGGTACTGCGGCAGAGGAGAATAAGCGCGATGACATGGGA
GGAAAGGTTGATGAAGAGAAGAGAATGGATACGGATACGGCCTTGGATGT
GAAGGTGGAGGAGGGCACGGATAAGGAAGCGAAGGAGGAGCAAAAAGGAC
GAGAGAGGGAGGCGGGACCGGGCACGCCGCAAAAGCCCTGTACACCTCAA
CCTTCTTCCCCCTCTTCTTCCTCCACCTGCTCCTCCCGCACGGCGTCTCC
GTTCTCCTACATTCATTCGCCCTCGACGACCCCTCACCACCTTGCCCCCC
TTCCTCTCTTCACCGACCGTCTTGCTCACTCGGAGAGGCAGCCCTCTCCC
TCGCCCTTCCGCATGGGTGAATTCGACGGAGAGAGGAAGGAGGGTAGGCC
TTGGCTTGAAACGAAAAGGAAAAGAGGCGGGATGGCGGGAAGGATATCTG
GCGAGGAGGAGAAAAATGGCGCGAAGAAAGAGAAGGTATCGGAGCGTGGG
TGGGCAAGGAGAGGCGAGAAGGAGGGAATGGCCGAAGGCGTGAGGGAGGG
AGGGGAGGAGGCAGAAGGTAACGAGGCAATGTGGATACGGGCGTTGCAGG
CAAGTTTCATTGGCTACCTGGGAGGGGTCGGGGTGACGTCGAAGAGGGCT
CAGACGCAGTATACTGAAGCAGTGACCCGGCTTGTAGCTAAGGTAGTGAA
GGCGTTGAGGGGGGGGGTGGTGGGAAGGAAGGGGGGGAAGAAGCAGAGAA
TCAAGAAAATGGAAGAGCGGGCAGGAGTGAGGGTCTCTCCGGCGGTGGGC
TTAAGGAGATTTCTGTGCAGACACATGGATGTGGTTGAGGGGATGATGGG
GAGGGAGGAAGAGGAAGAAGGACGGATGGCGCATGAAGTCATGATTAAGC
TGTATGATTTTATCATGTCTGCAGAAGAGGAGATGGAGGAGGAGAAAGAA
GTATGGAGAAGGAAGAAGAAAGAAGAGGAGAAAAGGAAGGAGGAGGCGGA
TGTAGAGGAGGAGGAGGAGAAGGAGGGCGAGGAGGAATTGGAGGAAGAGG
GGAGTGAAGGGAGAGAATCGAGGGGGGGGGCACCTACCGATGTAGTAAGA
AAAGGTTTAGATTCCTTTATGCAGCCCTCCTGCTCACTCACTCCCACCAC
CTGGCCTCTCCTGCCCTTAAGCATGGCGCGGAAAGCGATGAGGAGGGAAG
GTGGAGAAGAGCGAGGGAGGAGTAGGCCAAGAGGCGTGAAAAGAGAGGAG
GAAGGGGGGATAGCGAGAGAGGGTATGAAGGACGGAGCCAAGGATGTGAA
GGAAGGAGAGGAAAGGCAAAACGGAATAGCGCTTGGTGGAGGTTGGGAGG
CATTGGAGGAAGAGGAGGAAGGGGAGGAGGAAGAGGAGGAGGAAGAGGAA
GGGGACGAGGGAGGGGAAGAGGAAGGAGGGAAGGAGGAAGAGGAGATGGA
AGAAGAGGGGGAACTGGGTTTGTCGCCCGTGGTGTTTGGCGAGCTCGTGC
ACTTGATGGCGACAGGGATGAGGAAGGGGACAGGAGGGGGCGGGCGAGGA
GGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGGGAAGGAAG
GGAATGGGGGGTAACGAAATACGCGCACAGCGAGGCGTGGAAATGGGCGA
TGGCGATTGACGACGGAGTGCGAAGAATGCAGGAGGAAAGGGGAGAGGAG
GAGGAGGGAGGAGAGCGAGGCTGGAAACGGACGATGGGAAAGAGACGGCT
GCGGTCTTTGCTTGAGGGGGGCATGAGAAAGGAGGGAGGGAAGGAGGGCT
GGAGGGAGGGGTTGTACGCGAGGATGGTGGAGAGCCAGGGAGGGGACGGG
GAGCGGGCGTTTGAGAAGCTGTTGGTATTCTTAGGACAAAAAGACGGACA
AAATCGGTGGAAGGGGGGAGGGAAGGAGAGGGTAGGAAGGGCGGTAGTGG
GGAAGGTCAGGGAGAAGAGGAGGAGAGGGTGGGAGGGGGCAGCGAAGGGA
AGACAAAGGGGAGGGGTAGAAGGGGGAGGGAGTATGAGGTCTTGGGAGGG
GGGCTCGCCTGATGTGCTGCGCGGAGACATGGCGGGGCGAAGAACATGA

protein sequence of rna5076

>rna5076-protein ID=rna5076-protein|Name=rna5076|organism=Nannochloropsis gaditana|type=polypeptide|length=193bp
MLLAVRRQLVHSRHRIATIAPSSSKSPTCLFKTRGRNLGTSSSNGNGHNG
RQVPAVTPTAMCKAGGIGVVAGVFGSLVGMGGAFVLIPALTGLLKFSQHQ
AHALYVAGLGMMTARMGAVVSGRLSAATLQRLCGVFQVIVAPTVPLRNEI
LAFFGSNEEGKGEGKEEGMGGASDEQNDWTRRLQLMSIGAGSG

mRNA from alignment at CM002465.1:50244..52033+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna5076 ID=rna5076|Name=rna5076|organism=Nannochloropsis gaditana|type=mRNA|length=1790bp|location=Sequence derived from alignment at CM002465.1:50244..52033+ (Nannochloropsis gaditana)
ATGCTCCTCGCCGTACGCCGTCAACTCGTACATTCAAGACACAGAATTGC
CACGATAGCTCCGTCATCGTCAAAGTCTCCTACTTGCTTATTtaagacga
gggggaggaatcTCGGTACAAGCAGCAGTAATGGGAACGGACACAATGGT
AGGCAGGTTCCTGCCGTCACACCCACAGCAATGtgcaaggcaggggggat
CGGTAAGCTTTTTACCGTCGATATTGAATATTGAAAACGTATTATATTCT
ATCTAGCTGTATCGTAGGAATAAAAAATGTCTTTACCAGAAACGCCACCG
TAGGCCTCTATCTGTGGCTCCTCATCTATGGCCAGTTGGATTGCATTTCA
ATAGTAGCAATTGTTCTCGGCTCTCCTTGACATTAGATATTTCGTCACCC
TGTCGGCAAATACAGGAGTCGTGGCAGGCGTCTTTGGCTCACTAGTAGGC
ATGGGAGGTGCCTTCGTTCTGATCCCGGCTTTGACCGGCTTGTTGAAATT
CTCACAGCACCAGGCGCACGGTAGGGAGGTTGAGAGGATGATGAGGTGGG
ACGAGGGAGTCAGATCGCTGTGAAGGGGGACGACGGACGTACAGAAAGAG
CGTGGAGAGGAACCTTGAGAAAGAGTGGTCGGACGGACGCGTGAGCGCgt
catttctccttcttacACAGGCACATCCCTGGCGGCTGTGGTGGCCacag
ggagcggaggagccATCTCATACGCGAGTGCAGGCGCCGTTGAttgggag
gcaaggagaggggtcgggaagggaggacggagatgcGGGCAGGCATGGGA
TGagattgggggggggaaaggtttGAAAGCACCGGCCTTCGAGTCAATTt
cattctcttcctcctccatgctccgCGTTTTCAGGACTCTTTCGCCTGGT
CACATGAGATGCCAACTGCGGATTGACTCCTCCCTTACTTTCCCTCTccg
tttcccctcttccccttccttcctctttcgcttCCATAGGCAGCCCTGTA
CGTGGCCGGATTGGGCATGATGACGGCGCGCATGGGCGCCGTCGTGTCCG
GGAGGctctccgccgccacctTGCAAAGGCTTTGTGTAAggatgagagga
aaggccgggtcggaggcggggcgaaggaggtTATACAGGAGGAAAATcga
ggggggcagagggagacaagagggaaagggagatgtGCGAAGTGCggtga
gggaaaaaggaagtgCTCTCATGCGAACAGGCAAAGGTAGTGGAAGCTTC
TAGAAGACCGGGACGTGGGCCATGGCgtgcacgaggaagggacgaggtAG
TCAGTGAGACGATGAGAAAACTGACTTCTCGCATTCCACGGACAGGGTGT
ATTCCAAGTCATTGTGGCGCCCACCGTCCCCCTCAGGTACGAGCCACTCC
CTCTGCCACCCTGCTTCTctcgttcttcctccttccccctcttctccttt
cccctagAAACTGTCCACCACTTCCGTTCCTCGctcctatcctccctccc
tcctccccttcggcTCCTGCGCTTTTTCGACCAGGACTCGTGTCTCATGC
cagtcctttctccctccctttctccctctctccctctctcccttgttccc
tccctctctcccttatTTCACTCTTCTTGCGCATTTTCCTGACCGCAGGA
ACGAGATCCTGGCCTTCTTTGGCAgcaatgaggaagggaaaggggaaggg
aaggaggaagggatggggggggcgagtGACGAGCAGAATGATTGGACACG
GCGTCTCCAGCTCATGAGCATTGGGGCAGGTAGCGGGTAA

Coding sequence (CDS) from alignment at CM002465.1:50244..52033+

>rna5076 ID=rna5076|Name=rna5076|organism=Nannochloropsis gaditana|type=CDS|length=2910bp|location=Sequence derived from alignment at CM002465.1:50244..52033+ (Nannochloropsis gaditana)
ATGCTCCTCGCCGTACGCCGTCAACTCGTACATTCAAGACACAGAATTGC
CACGATAGCTCCGTCATCGTCAAAGTCTCCTACTTGCTTATTtaagacga
gggggaggaatcTCGGTACAAGCAGCAGTAATGGGAACGGACACAATGGT
AGGCAGGTTCCTGCCGTCACACCCACAGCAATGtgcaaggcaggggggat
CGGAGTCGTGGCAGGCGTCTTTGGCTCACTAGTAGGCATGGGAGGTGCCT
TCGTTCTGATCCCGGCTTTGACCGGCTTGTTGAAATTCTCACAGCACCAG
GCGCACGCCCTGTACGTGGCCGGATTGGGCATGATGACGGCGCGCATGGG
CGCCGTCGTGTCCGGGAGGctctccgccgccacctTGCAAAGGCTTTGTG
GTGTATTCCAAGTCATTGTGGCGCCCACCGTCCCCCTCAGGAACGAGATC
CTGGCCTTCTTTGGCAgcaatgaggaagggaaaggggaagggaaggagga
agggatggggggggcgagtGACGAGCAGAATGATTGGACACGGCGTCTCC
AGCTCATGAGCATTGGGGCAGGTAGCGGGTAAATGCTCCTCGCCGTACGC
CGTCAACTCGTACATTCAAGACACAGAATTGCCACGATAGCTCCGTCATC
GTCAAAGTCTCCTACTTGCTTATTtaagacgagggggaggaatcTCGGTA
CAAGCAGCAGTAATGGGAACGGACACAATGGTAGGCAGGTTCCTGCCGTC
ACACCCACAGCAATGtgcaaggcaggggggatCGGAGTCGTGGCAGGCGT
CTTTGGCTCACTAGTAGGCATGGGAGGTGCCTTCGTTCTGATCCCGGCTT
TGACCGGCTTGTTGAAATTCTCACAGCACCAGGCGCACGCCCTGTACGTG
GCCGGATTGGGCATGATGACGGCGCGCATGGGCGCCGTCGTGTCCGGGAG
GctctccgccgccacctTGCAAAGGCTTTGTGGTGTATTCCAAGTCATTG
TGGCGCCCACCGTCCCCCTCAGGAACGAGATCCTGGCCTTCTTTGGCAgc
aatgaggaagggaaaggggaagggaaggaggaagggatggggggggcgag
tGACGAGCAGAATGATTGGACACGGCGTCTCCAGCTCATGAGCATTGGGG
CAGGTAGCGGGTAAATGCTCCTCGCCGTACGCCGTCAACTCGTACATTCA
AGACACAGAATTGCCACGATAGCTCCGTCATCGTCAAAGTCTCCTACTTG
CTTATTtaagacgagggggaggaatcTCGGTACAAGCAGCAGTAATGGGA
ACGGACACAATGGTAGGCAGGTTCCTGCCGTCACACCCACAGCAATGtgc
aaggcaggggggatCGGAGTCGTGGCAGGCGTCTTTGGCTCACTAGTAGG
CATGGGAGGTGCCTTCGTTCTGATCCCGGCTTTGACCGGCTTGTTGAAAT
TCTCACAGCACCAGGCGCACGCCCTGTACGTGGCCGGATTGGGCATGATG
ACGGCGCGCATGGGCGCCGTCGTGTCCGGGAGGctctccgccgccacctT
GCAAAGGCTTTGTGGTGTATTCCAAGTCATTGTGGCGCCCACCGTCCCCC
TCAGGAACGAGATCCTGGCCTTCTTTGGCAgcaatgaggaagggaaaggg
gaagggaaggaggaagggatggggggggcgagtGACGAGCAGAATGATTG
GACACGGCGTCTCCAGCTCATGAGCATTGGGGCAGGTAGCGGGTAAATGC
TCCTCGCCGTACGCCGTCAACTCGTACATTCAAGACACAGAATTGCCACG
ATAGCTCCGTCATCGTCAAAGTCTCCTACTTGCTTATTtaagacgagggg
gaggaatcTCGGTACAAGCAGCAGTAATGGGAACGGACACAATGGTAGGC
AGGTTCCTGCCGTCACACCCACAGCAATGtgcaaggcaggggggatCGGA
GTCGTGGCAGGCGTCTTTGGCTCACTAGTAGGCATGGGAGGTGCCTTCGT
TCTGATCCCGGCTTTGACCGGCTTGTTGAAATTCTCACAGCACCAGGCGC
ACGCCCTGTACGTGGCCGGATTGGGCATGATGACGGCGCGCATGGGCGCC
GTCGTGTCCGGGAGGctctccgccgccacctTGCAAAGGCTTTGTGGTGT
ATTCCAAGTCATTGTGGCGCCCACCGTCCCCCTCAGGAACGAGATCCTGG
CCTTCTTTGGCAgcaatgaggaagggaaaggggaagggaaggaggaaggg
atggggggggcgagtGACGAGCAGAATGATTGGACACGGCGTCTCCAGCT
CATGAGCATTGGGGCAGGTAGCGGGTAAATGCTCCTCGCCGTACGCCGTC
AACTCGTACATTCAAGACACAGAATTGCCACGATAGCTCCGTCATCGTCA
AAGTCTCCTACTTGCTTATTtaagacgagggggaggaatcTCGGTACAAG
CAGCAGTAATGGGAACGGACACAATGGTAGGCAGGTTCCTGCCGTCACAC
CCACAGCAATGtgcaaggcaggggggatCGGAGTCGTGGCAGGCGTCTTT
GGCTCACTAGTAGGCATGGGAGGTGCCTTCGTTCTGATCCCGGCTTTGAC
CGGCTTGTTGAAATTCTCACAGCACCAGGCGCACGCCCTGTACGTGGCCG
GATTGGGCATGATGACGGCGCGCATGGGCGCCGTCGTGTCCGGGAGGctc
tccgccgccacctTGCAAAGGCTTTGTGGTGTATTCCAAGTCATTGTGGC
GCCCACCGTCCCCCTCAGGAACGAGATCCTGGCCTTCTTTGGCAgcaatg
aggaagggaaaggggaagggaaggaggaagggatggggggggcgagtGAC
GAGCAGAATGATTGGACACGGCGTCTCCAGCTCATGAGCATTGGGGCAGG
TAGCGGGTAA

Synonyms

Publications