EWM25610.1, cds5064 (CDS) Nannochloropsis gaditana

Overview
NameEWM25610.1
Unique Namecds5064
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002465.1:50244..50445 +
Alignment locationCM002465.1:50659..50763 +
Alignment locationCM002465.1:51237..51328 +
Alignment locationCM002465.1:51589..51629 +
Alignment locationCM002465.1:51892..52033 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM25610.1
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100544g3.3244.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002465.1supercontigCM002465.1:50244..50445 +
CM002465.1supercontigCM002465.1:50659..50763 +
CM002465.1supercontigCM002465.1:51237..51328 +
CM002465.1supercontigCM002465.1:51589..51629 +
CM002465.1supercontigCM002465.1:51892..52033 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Homology
BLAST of EWM25610.1 vs. NCBI_GenBank
Match: gi|585107427|gb|EWM25610.1| (hypothetical protein Naga_100544g3 [Nannochloropsis gaditana])

HSP 1 Score: 388.267 bits (996), Expect = 1.949e-136
Identity = 193/193 (100.00%), Postives = 193/193 (100.00%), Query Frame = 0
Query:    1 MLLAVRRQLVHSRHRIATIAPSSSKSPTCLFKTRGRNLGTSSSNGNGHNGRQVPAVTPTAMCKAGGIGVVAGVFGSLVGMGGAFVLIPALTGLLKFSQHQAHALYVAGLGMMTARMGAVVSGRLSAATLQRLCGVFQVIVAPTVPLRNEILAFFGSNEEGKGEGKEEGMGGASDEQNDWTRRLQLMSIGAGSG 193
            MLLAVRRQLVHSRHRIATIAPSSSKSPTCLFKTRGRNLGTSSSNGNGHNGRQVPAVTPTAMCKAGGIGVVAGVFGSLVGMGGAFVLIPALTGLLKFSQHQAHALYVAGLGMMTARMGAVVSGRLSAATLQRLCGVFQVIVAPTVPLRNEILAFFGSNEEGKGEGKEEGMGGASDEQNDWTRRLQLMSIGAGSG
Sbjct:    1 MLLAVRRQLVHSRHRIATIAPSSSKSPTCLFKTRGRNLGTSSSNGNGHNGRQVPAVTPTAMCKAGGIGVVAGVFGSLVGMGGAFVLIPALTGLLKFSQHQAHALYVAGLGMMTARMGAVVSGRLSAATLQRLCGVFQVIVAPTVPLRNEILAFFGSNEEGKGEGKEEGMGGASDEQNDWTRRLQLMSIGAGSG 193          
BLAST of EWM25610.1 vs. NCBI_GenBank
Match: gi|553191442|ref|XP_005855378.1| (hypothetical protein NGA_0076700, partial [Nannochloropsis gaditana CCMP526] >gi|422293677|gb|EKU20977.1| hypothetical protein NGA_0076700, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 260.766 bits (665), Expect = 5.461e-87
Identity = 132/133 (99.25%), Postives = 132/133 (99.25%), Query Frame = 0
Query:    1 MLLAVRRQLVHSRHRIATIAPSSSKSPTCLFKTRGRNLGTSSSNGNGHNGRQVPAVTPTAMCKAGGIGVVAGVFGSLVGMGGAFVLIPALTGLLKFSQHQAHALYVAGLGMMTARMGAVVSGRLSAATLQRLC 133
            MLLAVRRQLVHSRHRIATIAPSSSKSPTCLFKTRGRNLGTSSSNGNGHNG QVPAVTPTAMCKAGGIGVVAGVFGSLVGMGGAFVLIPALTGLLKFSQHQAHALYVAGLGMMTARMGAVVSGRLSAATLQRLC
Sbjct:    1 MLLAVRRQLVHSRHRIATIAPSSSKSPTCLFKTRGRNLGTSSSNGNGHNGGQVPAVTPTAMCKAGGIGVVAGVFGSLVGMGGAFVLIPALTGLLKFSQHQAHALYVAGLGMMTARMGAVVSGRLSAATLQRLC 133          
BLAST of EWM25610.1 vs. NCBI_GenBank
Match: gi|219127009|ref|XP_002183737.1| (predicted protein [Phaeodactylum tricornutum CCAP 1055/1] >gi|217404974|gb|EEC44919.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1])

HSP 1 Score: 76.6406 bits (187), Expect = 6.202e-13
Identity = 59/163 (36.20%), Postives = 78/163 (47.85%), Query Frame = 0
Query:   58 PTAMCKAGGIGVVAGVFGSLVGMGGAFVLIPALTG-LLKFSQHQAH--------------------------ALYVAGLGMMTARMGAVVSGRLSAATLQRLCGVFQVIVAPTVPLRNEILAFFGSNEEGKGEGKEEGMGGASDEQNDWTRRLQLMSIGAGSG 193
            P A+  A  IG  AGV GSL GMGG FV+IP +T   L+ +QHQAH                          A  +A  GM+TARMGA V+ R SA TL++  GV  +++AP VP +    A+     E     + E     S+     +R L   +IG GSG
Sbjct:   44 PHALATAFAIGGTAGVLGSLAGMGGGFVMIPLMTSRALRLTQHQAHGTSLFAVSATGVAGAWSYVHEVQWESAAAIALCGMVTARMGAHVTTRTSATTLRKALGVLMLLMAPAVPAK----AYLTQRAEATEASRAEAETMPSEPL---SRFLPPAAIGLGSG 199          
BLAST of EWM25610.1 vs. NCBI_GenBank
Match: gi|1210526398|dbj|GAX14886.1| (hypothetical protein FisN_29Lh100 [Fistulifera solaris])

HSP 1 Score: 73.1738 bits (178), Expect = 6.255e-12
Identity = 65/217 (29.95%), Postives = 95/217 (43.78%), Query Frame = 0
Query:    6 RRQLVHSRHRIATIAPSSSKSPTCLFKTRGRNLGTSSSNGNGHNGRQVPAVTPTAMCKAGGIGVVAGVFGSLVGMGGAFVLIPALTGLLKFSQHQAH-----ALYVAGLG---------------------MMTARMGAVVSGRLSAATLQRLCGVFQVIVAPTVPLRNEILAFFG--SNEEGKGEGKEEGMGGASDE-QNDWTRRLQLMSIGAGSG 193
            RR +  S        P+ +K+    F  +  ++   SS  N HN        P    KA  IG +AG  GSL GMGG FV+IP LTG+ + SQHQAH     A+   GL                      M+TA +GA  +  LS   L+R  GV  +++ P VP +  I+  +    + +   EG+E      S   ++ + + +   SIG  SG
Sbjct:   17 RRHVTQSSRTTHEGNPAQNKAS---FSPKNDSITKKSSIKN-HNSISDKKDIP----KAFAIGTLAGTMGSLAGMGGGFVMIPLLTGVCRLSQHQAHGTSLAAVMATGLAGAVSYQDHVDFAAAGPLAAAAMLTASLGAKTTTFLSEKWLKRALGVLLLVMGPAVPAKQHIVEQYSHLHHPQNTMEGEENYATSTSHNIESSYPKWVAPASIGLCSG 225          
BLAST of EWM25610.1 vs. NCBI_GenBank
Match: gi|1072225325|gb|OEU10072.1| (hypothetical protein FRACYDRAFT_247682 [Fragilariopsis cylindrus CCMP1102])

HSP 1 Score: 72.0182 bits (175), Expect = 7.516e-12
Identity = 46/118 (38.98%), Postives = 67/118 (56.78%), Query Frame = 0
Query:   59 TAMCKAGGIGVVAGVFGSLVGMGGAFVLIPALTG--LLKFSQHQAH--ALY------------------------VAGLGMMTARMGAVVSGRLSAATLQRLCGVFQVIVAPTVPLRN 148
            T + K+  IG +AG+ GSL GMGG F++IP +T   LL  +QHQAH  +L+                        +A  GM TA +GA  + +LS ATL++  GVF ++VAPT+PL++
Sbjct:   47 TVLPKSLMIGTIAGMCGSLAGMGGGFLMIPLMTSKRLLGLTQHQAHGTSLFAVATTGLAGAISYSGEVDFEAAGMIALFGMATASIGANATTKLSGATLKKALGVFMLLVAPTIPLKD 164          
BLAST of EWM25610.1 vs. NCBI_GenBank
Match: gi|1210519538|dbj|GAX21662.1| (hypothetical protein FisN_29Hh100 [Fistulifera solaris])

HSP 1 Score: 71.2478 bits (173), Expect = 2.700e-11
Identity = 52/162 (32.10%), Postives = 74/162 (45.68%), Query Frame = 0
Query:   21 PSSSKSPTCLFKTRGRNLGTSSSNGN-GHNGRQVPAVTPTAMCKAGGIGVVAGVFGSLVGMGGAFVLIPALTGLLKFSQHQAH-----ALYVAGLG---------------------MMTARMGAVVSGRLSAATLQRLCGVFQVIVAPTVPLRNEILAFFG 155
            P+ SKS +   K       T+  + N  ++   +P        KA  IG +AG  GSL GMGG FV+IP LTG+ + SQHQAH     A+   GL                      M+TA +GA  +  LS   L+R  GV  +++ P VP +  I+  + 
Sbjct:   30 PAKSKSSSFPPKNHSNTTNTNIQDPNLVYDKNDIP--------KAFAIGTLAGTMGSLAGMGGGFVMIPLLTGVCRLSQHQAHGTSLAAVMATGLAGAVSYQDHVDLAAAGPLTAAAMLTASLGAKTTTFLSEKWLKRALGVLLLVMGPAVPAKQHIVEQYA 183          
The following BLAST results are available for this feature:
BLAST of EWM25610.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 6
Match NameE-valueIdentityDescription
gi|585107427|gb|EWM25610.1|1.949e-136100.00hypothetical protein Naga_100544g3 [Nannochloropsi... [more]
gi|553191442|ref|XP_005855378.1|5.461e-8799.25hypothetical protein NGA_0076700, partial [Nannoch... [more]
gi|219127009|ref|XP_002183737.1|6.202e-1336.20predicted protein [Phaeodactylum tricornutum CCAP ... [more]
gi|1210526398|dbj|GAX14886.1|6.255e-1229.95hypothetical protein FisN_29Lh100 [Fistulifera sol... [more]
gi|1072225325|gb|OEU10072.1|7.516e-1238.98hypothetical protein FRACYDRAFT_247682 [Fragilario... [more]
gi|1210519538|dbj|GAX21662.1|2.700e-1132.10hypothetical protein FisN_29Hh100 [Fistulifera sol... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna5076rna5076Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications