EWM25610.1, cds5064 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM25610.1 vs. NCBI_GenBank
Match: gi|585107427|gb|EWM25610.1| (hypothetical protein Naga_100544g3 [Nannochloropsis gaditana]) HSP 1 Score: 388.267 bits (996), Expect = 1.949e-136 Identity = 193/193 (100.00%), Postives = 193/193 (100.00%), Query Frame = 0
Query: 1 MLLAVRRQLVHSRHRIATIAPSSSKSPTCLFKTRGRNLGTSSSNGNGHNGRQVPAVTPTAMCKAGGIGVVAGVFGSLVGMGGAFVLIPALTGLLKFSQHQAHALYVAGLGMMTARMGAVVSGRLSAATLQRLCGVFQVIVAPTVPLRNEILAFFGSNEEGKGEGKEEGMGGASDEQNDWTRRLQLMSIGAGSG 193
MLLAVRRQLVHSRHRIATIAPSSSKSPTCLFKTRGRNLGTSSSNGNGHNGRQVPAVTPTAMCKAGGIGVVAGVFGSLVGMGGAFVLIPALTGLLKFSQHQAHALYVAGLGMMTARMGAVVSGRLSAATLQRLCGVFQVIVAPTVPLRNEILAFFGSNEEGKGEGKEEGMGGASDEQNDWTRRLQLMSIGAGSG
Sbjct: 1 MLLAVRRQLVHSRHRIATIAPSSSKSPTCLFKTRGRNLGTSSSNGNGHNGRQVPAVTPTAMCKAGGIGVVAGVFGSLVGMGGAFVLIPALTGLLKFSQHQAHALYVAGLGMMTARMGAVVSGRLSAATLQRLCGVFQVIVAPTVPLRNEILAFFGSNEEGKGEGKEEGMGGASDEQNDWTRRLQLMSIGAGSG 193
BLAST of EWM25610.1 vs. NCBI_GenBank
Match: gi|553191442|ref|XP_005855378.1| (hypothetical protein NGA_0076700, partial [Nannochloropsis gaditana CCMP526] >gi|422293677|gb|EKU20977.1| hypothetical protein NGA_0076700, partial [Nannochloropsis gaditana CCMP526]) HSP 1 Score: 260.766 bits (665), Expect = 5.461e-87 Identity = 132/133 (99.25%), Postives = 132/133 (99.25%), Query Frame = 0
Query: 1 MLLAVRRQLVHSRHRIATIAPSSSKSPTCLFKTRGRNLGTSSSNGNGHNGRQVPAVTPTAMCKAGGIGVVAGVFGSLVGMGGAFVLIPALTGLLKFSQHQAHALYVAGLGMMTARMGAVVSGRLSAATLQRLC 133
MLLAVRRQLVHSRHRIATIAPSSSKSPTCLFKTRGRNLGTSSSNGNGHNG QVPAVTPTAMCKAGGIGVVAGVFGSLVGMGGAFVLIPALTGLLKFSQHQAHALYVAGLGMMTARMGAVVSGRLSAATLQRLC
Sbjct: 1 MLLAVRRQLVHSRHRIATIAPSSSKSPTCLFKTRGRNLGTSSSNGNGHNGGQVPAVTPTAMCKAGGIGVVAGVFGSLVGMGGAFVLIPALTGLLKFSQHQAHALYVAGLGMMTARMGAVVSGRLSAATLQRLC 133
BLAST of EWM25610.1 vs. NCBI_GenBank
Match: gi|219127009|ref|XP_002183737.1| (predicted protein [Phaeodactylum tricornutum CCAP 1055/1] >gi|217404974|gb|EEC44919.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]) HSP 1 Score: 76.6406 bits (187), Expect = 6.202e-13 Identity = 59/163 (36.20%), Postives = 78/163 (47.85%), Query Frame = 0
Query: 58 PTAMCKAGGIGVVAGVFGSLVGMGGAFVLIPALTG-LLKFSQHQAH--------------------------ALYVAGLGMMTARMGAVVSGRLSAATLQRLCGVFQVIVAPTVPLRNEILAFFGSNEEGKGEGKEEGMGGASDEQNDWTRRLQLMSIGAGSG 193
P A+ A IG AGV GSL GMGG FV+IP +T L+ +QHQAH A +A GM+TARMGA V+ R SA TL++ GV +++AP VP + A+ E + E S+ +R L +IG GSG
Sbjct: 44 PHALATAFAIGGTAGVLGSLAGMGGGFVMIPLMTSRALRLTQHQAHGTSLFAVSATGVAGAWSYVHEVQWESAAAIALCGMVTARMGAHVTTRTSATTLRKALGVLMLLMAPAVPAK----AYLTQRAEATEASRAEAETMPSEPL---SRFLPPAAIGLGSG 199
BLAST of EWM25610.1 vs. NCBI_GenBank
Match: gi|1210526398|dbj|GAX14886.1| (hypothetical protein FisN_29Lh100 [Fistulifera solaris]) HSP 1 Score: 73.1738 bits (178), Expect = 6.255e-12 Identity = 65/217 (29.95%), Postives = 95/217 (43.78%), Query Frame = 0
Query: 6 RRQLVHSRHRIATIAPSSSKSPTCLFKTRGRNLGTSSSNGNGHNGRQVPAVTPTAMCKAGGIGVVAGVFGSLVGMGGAFVLIPALTGLLKFSQHQAH-----ALYVAGLG---------------------MMTARMGAVVSGRLSAATLQRLCGVFQVIVAPTVPLRNEILAFFG--SNEEGKGEGKEEGMGGASDE-QNDWTRRLQLMSIGAGSG 193
RR + S P+ +K+ F + ++ SS N HN P KA IG +AG GSL GMGG FV+IP LTG+ + SQHQAH A+ GL M+TA +GA + LS L+R GV +++ P VP + I+ + + + EG+E S ++ + + + SIG SG
Sbjct: 17 RRHVTQSSRTTHEGNPAQNKAS---FSPKNDSITKKSSIKN-HNSISDKKDIP----KAFAIGTLAGTMGSLAGMGGGFVMIPLLTGVCRLSQHQAHGTSLAAVMATGLAGAVSYQDHVDFAAAGPLAAAAMLTASLGAKTTTFLSEKWLKRALGVLLLVMGPAVPAKQHIVEQYSHLHHPQNTMEGEENYATSTSHNIESSYPKWVAPASIGLCSG 225
BLAST of EWM25610.1 vs. NCBI_GenBank
Match: gi|1072225325|gb|OEU10072.1| (hypothetical protein FRACYDRAFT_247682 [Fragilariopsis cylindrus CCMP1102]) HSP 1 Score: 72.0182 bits (175), Expect = 7.516e-12 Identity = 46/118 (38.98%), Postives = 67/118 (56.78%), Query Frame = 0
Query: 59 TAMCKAGGIGVVAGVFGSLVGMGGAFVLIPALTG--LLKFSQHQAH--ALY------------------------VAGLGMMTARMGAVVSGRLSAATLQRLCGVFQVIVAPTVPLRN 148
T + K+ IG +AG+ GSL GMGG F++IP +T LL +QHQAH +L+ +A GM TA +GA + +LS ATL++ GVF ++VAPT+PL++
Sbjct: 47 TVLPKSLMIGTIAGMCGSLAGMGGGFLMIPLMTSKRLLGLTQHQAHGTSLFAVATTGLAGAISYSGEVDFEAAGMIALFGMATASIGANATTKLSGATLKKALGVFMLLVAPTIPLKD 164
BLAST of EWM25610.1 vs. NCBI_GenBank
Match: gi|1210519538|dbj|GAX21662.1| (hypothetical protein FisN_29Hh100 [Fistulifera solaris]) HSP 1 Score: 71.2478 bits (173), Expect = 2.700e-11 Identity = 52/162 (32.10%), Postives = 74/162 (45.68%), Query Frame = 0
Query: 21 PSSSKSPTCLFKTRGRNLGTSSSNGN-GHNGRQVPAVTPTAMCKAGGIGVVAGVFGSLVGMGGAFVLIPALTGLLKFSQHQAH-----ALYVAGLG---------------------MMTARMGAVVSGRLSAATLQRLCGVFQVIVAPTVPLRNEILAFFG 155
P+ SKS + K T+ + N ++ +P KA IG +AG GSL GMGG FV+IP LTG+ + SQHQAH A+ GL M+TA +GA + LS L+R GV +++ P VP + I+ +
Sbjct: 30 PAKSKSSSFPPKNHSNTTNTNIQDPNLVYDKNDIP--------KAFAIGTLAGTMGSLAGMGGGFVMIPLLTGVCRLSQHQAHGTSLAAVMATGLAGAVSYQDHVDLAAAGPLTAAAMLTASLGAKTTTFLSEKWLKRALGVLLLVMGPAVPAKQHIVEQYA 183 The following BLAST results are available for this feature:
BLAST of EWM25610.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 6
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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