rna507, rna507 (mRNA) Nannochloropsis gaditana

Overview
Namerna507
Unique Namerna507
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1670
Alignment locationCM002455.1:1273838..1274607 +

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Properties
Property NameValue
ProductEKC/KEOPS complex, subunit Pcc1
Orig transcript idgnl|cribi|Naga_100096g16.979.mrna
Orig protein idgnl|cribi|Naga_100096g16.979
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002455.1supercontigCM002455.1:1273838..1274607 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100096g16gene488Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna507rna507-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM30171.1cds507Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna507 ID=rna507|Name=rna507|organism=Nannochloropsis gaditana|type=mRNA|length=1670bp
CACAAAATGTACCTCATCCCTCTACATGAAAAACATATTGTAGTATTCTC
CCCTCCGTGTCTTGCCATCACGCCCCGCACCCACGTAGCTTGGCCTCAGT
CGAGAATGAAGATAAGAGACGTTGATAACCTCCTCACCCCCTTTAGCAAA
GTGTCGAGCCAGACGGACGCACAAATCAAATTCCTGCTCAGCCCCCAACG
GCACCCGGCAACAAACGCTTCAGTGTGCTTCATTTGATGTGCAGATTTGG
TGAACATGGCTGGTCATATTCACCAACCTATGACATCGAGGATATGTGAC
GTTCAAGGCCGCGATTTAAAATTCCGTGCCGGCCATTGTAAATCAGGGAC
ATGTCATCTTGCCCGCAAACAGGATGTGAACAGCCTTACTTTTTAGTCGT
TGCACAGCTAAATAGACACCACCATGGTCACACCGGGGACGGACGTATGT
TCTGTACGGATCTCGTTCGCAAATTCTTCCTGTATAGGCAACTTCACTCA
TGCATTGTTCTATCCGCCTCAGTAGTGGCTTCACAGGTCTCACCAAGCAG
CCGTGTTCGTACACATGGGTGCCTATATCAGCTCCAGCGTCCAAGCAAAT
TCCTCACGCCCGCAATCCTCACGCCCTGCTTTATCATCGTCTAATAATTC
CGGCCCTGCATACCGTGGAGGGCATCTTCACTCGTCCCATGGCCGTCGAC
CTATGCGGCTGTCGCGGCACAACCCGTGGGCATTTCAAACAGCAGTCTCC
GAAGCTTTGAAACGCCGGGGCTACATTGACGCTTTGTGGGATGCTCTGTC
CAATGGCGACAAATCCTCTCACCGGGCGCCTGTGCCGTGTGAGGTACTTC
CCCTCATCTTGCATTTCGCTGGCTCGTACAAAGAAATGACGCTGAGCAAA
GAAGAACCCGTCCGGATCTCAAACGGAAATTTCGCGTACCTGACACACCC
TATCCCGACGAATCTCCACGGGCATCAGGTTGTGGGTGCCCGTATATCGG
TAACGTCCCATGATCAAGGATGGAGCAGTGAGCATCCGCACCTACGTGGC
ACGTACATTGGCAGTTACACATGGGGGGAAGCTTTGGTGGTGGAGTCGAG
CTCCCCGACGAGCACCACAGAGCAGGGGATCCCACGCGTGGTGGTGGGTA
CGGAGGTGTATCGGAATTTGCACGCCGTGAAGATATGGCAGACGCATGAG
AAGACCTTCGTCGGGCCCCTGGCCTCGCCGAGGGGCAAGGGGCAGGTCGA
CGAAGAATCCAAAGAGGAAGGAGTACAGTCGGATGGGGGCGATTTGATAT
CGGCCTTGCGGCCAGGGCGTGCCTTGGCGTTGCATTTACATGCTCAGTAT
CCTGGCTGGACCAATTTCACCCAGGGCGCGCACATCACCATCCAGTACCT
GCGTGTGGACTGAGAGATGAACGGGCGACGAGGGGAGGGAAGAGGGACGG
AAGGGGAGGTGTGCATGACGGGGAACTACAGTTGGAGGCCAAGAGAAAGT
AACGCTGTATTTTGTATGTACTGATATTCTGCTTGTTACAATGTTTTGAG
TGTTCGATGTTTTATCCCCCGCTTTCCAAGTTCCATTATCTCCCTTCCCG
TTCTTTGACTTTCTTCTGGTGCTCCGCCCTTCCGAGCTCTATCGCGGTTT
TCAGTATGTTGTGCAGCGCC
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protein sequence of rna507

>rna507-protein ID=rna507-protein|Name=rna507|organism=Nannochloropsis gaditana|type=polypeptide|length=144bp
MARHGGENTTICFSCRGMRYILWRCLGDSRQVACLLLSYTPFHLLTAVQD
MASLKDPKATLHHCRISLHLTSSSKAQLIQDVLEVDEELQPDKVCKSFAV
EGSALNVHLVSCDLKVLRVAVSSFYDMLTVALKTLLQFDNENGL
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mRNA from alignment at CM002455.1:1273838..1274607+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna507 ID=rna507|Name=rna507|organism=Nannochloropsis gaditana|type=mRNA|length=770bp|location=Sequence derived from alignment at CM002455.1:1273838..1274607+ (Nannochloropsis gaditana)
GGCCAAGCTACGTGGGTGCGGGGCGTGATGGCAAGACACGGAGGGGAGAA
TACTACAATATGTTTTTCATGTAGAGGGATGAGGTACATTTTGTGGCGAT
GTCTCGGCGACTCCCGTCAGGTTGCCTGCCTCTTGCTCTCTTAtaccccc
ttccacctccttacGGCAGTACAGGACATGGCATCGTTAAAGGACCCGAA
GGCAACCTTACATCACTGGTGAGTAATACGATGCGCTGCAGTGTTTGTAA
AATTGCATCTTGTAGATTAAATGGGGTGGTTTTGCCAATGCCACCATTGA
TTCTTACTCGAGAATTTTTGTATTAATAGTCGAATAAGTCTCCACTTAAC
TAGCTCTAGTAAGGCCCAGCTAATACAAGATGTCTTGGAAGTCGATGAGG
AGCTGCAACCAGACAAAGTTTGTAAATCATTCGCTGTGGAGGGGTCAGCG
CTGAATGTGCATCTGGTGTCATGTGACCTGAAAGTCCTAAGGGTTGCTGT
GTCCTCTTTCTACGACATGCTTACGGTGGCTCTTAAAACTCTGCTGCAGT
TCGACAACGAAAATGGACTTTGACAGGACTTGAGGTTCACCTCGTAACTA
CTTTGCTAAACAGGTTGGGATTCGTGGAAAACCTCCGGGGAAGGCGATGT
ATATATTGGTGGAAAATCTTTCCCACGTGAAGGGCCTCGTCCGTACCTTA
CACGGAATTTTGAAGCATGGAAGAACCTTCAAATTAAGCGTTAAAGAACA
TTCTGATCTGACTGATGGAC
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Coding sequence (CDS) from alignment at CM002455.1:1273838..1274607+

>rna507 ID=rna507|Name=rna507|organism=Nannochloropsis gaditana|type=CDS|length=870bp|location=Sequence derived from alignment at CM002455.1:1273838..1274607+ (Nannochloropsis gaditana)
ATGGCAAGACACGGAGGGGAGAATACTACAATATGTTTTTCATGTAGAGG
GATGAGGTACATTTTGTGGCGATGTCTCGGCGACTCCCGTCAGGTTGCCT
GCCTCTTGCTCTCTTAtacccccttccacctccttacGGCAGTACAGGAC
ATGGCATCGTTAAAGGACCCGAAGGCAACCTTACATCACTGTCGAATAAG
TCTCCACTTAACTAGCTCTAGTAAGGCCCAGCTAATACAAGATGTCTTGG
AAGTCGATGAGGAGCTGCAACCAGACAAAGTTTGTAAATCATTCGCTGTG
GAGGGGTCAGCGCTGAATGTGCATCTGGTGTCATGTGACCTGAAAGTCCT
AAGGGTTGCTGTGTCCTCTTTCTACGACATGCTTACGGTGGCTCTTAAAA
CTCTGCTGCAGTTCGACAACGAAAATGGACTTTGAATGGCAAGACACGGA
GGGGAGAATACTACAATATGTTTTTCATGTAGAGGGATGAGGTACATTTT
GTGGCGATGTCTCGGCGACTCCCGTCAGGTTGCCTGCCTCTTGCTCTCTT
AtacccccttccacctccttacGGCAGTACAGGACATGGCATCGTTAAAG
GACCCGAAGGCAACCTTACATCACTGTCGAATAAGTCTCCACTTAACTAG
CTCTAGTAAGGCCCAGCTAATACAAGATGTCTTGGAAGTCGATGAGGAGC
TGCAACCAGACAAAGTTTGTAAATCATTCGCTGTGGAGGGGTCAGCGCTG
AATGTGCATCTGGTGTCATGTGACCTGAAAGTCCTAAGGGTTGCTGTGTC
CTCTTTCTACGACATGCTTACGGTGGCTCTTAAAACTCTGCTGCAGTTCG
ACAACGAAAATGGACTTTGA
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Synonyms
Publications