EWM30171.1, cds507 (CDS) Nannochloropsis gaditana

Overview
NameEWM30171.1
Unique Namecds507
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002455.1:1273865..1274055 +
Alignment locationCM002455.1:1274167..1274410 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM30171.1
ProductEKC/KEOPS complex, subunit Pcc1
Orig transcript idgnl|cribi|Naga_100096g16.979.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002455.1supercontigCM002455.1:1273865..1274055 +
CM002455.1supercontigCM002455.1:1274167..1274410 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: INTERPRO
TermDefinition
IPR015419CTAG/Pcc1
Homology
BLAST of EWM30171.1 vs. NCBI_GenBank
Match: gi|585112828|gb|EWM30171.1| (EKC/KEOPS complex, subunit Pcc1 [Nannochloropsis gaditana])

HSP 1 Score: 297.745 bits (761), Expect = 3.189e-102
Identity = 144/144 (100.00%), Postives = 144/144 (100.00%), Query Frame = 0
Query:    1 MARHGGENTTICFSCRGMRYILWRCLGDSRQVACLLLSYTPFHLLTAVQDMASLKDPKATLHHCRISLHLTSSSKAQLIQDVLEVDEELQPDKVCKSFAVEGSALNVHLVSCDLKVLRVAVSSFYDMLTVALKTLLQFDNENGL 144
            MARHGGENTTICFSCRGMRYILWRCLGDSRQVACLLLSYTPFHLLTAVQDMASLKDPKATLHHCRISLHLTSSSKAQLIQDVLEVDEELQPDKVCKSFAVEGSALNVHLVSCDLKVLRVAVSSFYDMLTVALKTLLQFDNENGL
Sbjct:    1 MARHGGENTTICFSCRGMRYILWRCLGDSRQVACLLLSYTPFHLLTAVQDMASLKDPKATLHHCRISLHLTSSSKAQLIQDVLEVDEELQPDKVCKSFAVEGSALNVHLVSCDLKVLRVAVSSFYDMLTVALKTLLQFDNENGL 144          
BLAST of EWM30171.1 vs. NCBI_GenBank
Match: gi|553193653|ref|XP_005855812.1| (hypothetical protein NGA_2086400, partial [Nannochloropsis gaditana CCMP526] >gi|422293248|gb|EKU20548.1| hypothetical protein NGA_2086400, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 194.126 bits (492), Expect = 7.206e-62
Identity = 96/96 (100.00%), Postives = 96/96 (100.00%), Query Frame = 0
Query:   49 QDMASLKDPKATLHHCRISLHLTSSSKAQLIQDVLEVDEELQPDKVCKSFAVEGSALNVHLVSCDLKVLRVAVSSFYDMLTVALKTLLQFDNENGL 144
            QDMASLKDPKATLHHCRISLHLTSSSKAQLIQDVLEVDEELQPDKVCKSFAVEGSALNVHLVSCDLKVLRVAVSSFYDMLTVALKTLLQFDNENGL
Sbjct:    1 QDMASLKDPKATLHHCRISLHLTSSSKAQLIQDVLEVDEELQPDKVCKSFAVEGSALNVHLVSCDLKVLRVAVSSFYDMLTVALKTLLQFDNENGL 96          
BLAST of EWM30171.1 vs. NCBI_GenBank
Match: gi|695376960|ref|XP_009515900.1| (hypothetical protein PHYSODRAFT_469149, partial [Phytophthora sojae] >gi|348688811|gb|EGZ28625.1| hypothetical protein PHYSODRAFT_469149, partial [Phytophthora sojae])

HSP 1 Score: 74.7146 bits (182), Expect = 3.714e-15
Identity = 35/73 (47.95%), Postives = 51/73 (69.86%), Query Frame = 0
Query:   66 ISLHLTSSSKAQLIQDVLEVDEELQPDKVCKSFAVEGSALNVHLVSCDLKVLRVAVSSFYDMLTVALKTLLQF 138
            ISL       AQ +   LEVD+ELQPDK+ ++  V+G+ L+VH  + ++++LR AVSSFYDM  +A +TLL+F
Sbjct:    1 ISLTFPEEVDAQYVLQTLEVDDELQPDKIHRTLTVKGAELHVHFEATEIRLLRAAVSSFYDMGVLAARTLLEF 73          
BLAST of EWM30171.1 vs. NCBI_GenBank
Match: gi|566020609|gb|ETI43520.1| (hypothetical protein F443_11539 [Phytophthora parasitica P1569] >gi|568046430|gb|ETM43539.1| hypothetical protein L914_11061 [Phytophthora parasitica])

HSP 1 Score: 73.9442 bits (180), Expect = 1.001e-14
Identity = 37/88 (42.05%), Postives = 54/88 (61.36%), Query Frame = 0
Query:   51 MASLKDPKATLHHCRISLHLTSSSKAQLIQDVLEVDEELQPDKVCKSFAVEGSALNVHLVSCDLKVLRVAVSSFYDMLTVALKTLLQF 138
            M S K P      C I+L       AQ +   LEVDEELQP+K+ ++  V+G+ L+VH  + ++++LR AVSSFYDM  +  + LL+F
Sbjct:    1 MDSAKHP----FECEINLSFPEEVDAQYVLQTLEVDEELQPEKIHRTLTVKGAELHVHFEATEIRLLRAAVSSFYDMSVLTARALLEF 84          
BLAST of EWM30171.1 vs. NCBI_GenBank
Match: gi|567958065|gb|ETK83659.1| (hypothetical protein L915_11231 [Phytophthora parasitica] >gi|567986759|gb|ETL37076.1| hypothetical protein L916_11128 [Phytophthora parasitica] >gi|568016041|gb|ETL90218.1| hypothetical protein L917_11032 [Phytophthora parasitica] >gi|570324310|gb|ETO72258.1| hypothetical protein F444_11610 [Phytophthora parasitica P1976] >gi|570948152|gb|ETP13409.1| hypothetical protein F441_11459 [Phytophthora parasitica CJ01A1] >gi|570980943|gb|ETP41477.1| hypothetical protein F442_11433 [Phytophthora parasitica P10297])

HSP 1 Score: 73.9442 bits (180), Expect = 1.204e-14
Identity = 33/75 (44.00%), Postives = 50/75 (66.67%), Query Frame = 0
Query:   64 CRISLHLTSSSKAQLIQDVLEVDEELQPDKVCKSFAVEGSALNVHLVSCDLKVLRVAVSSFYDMLTVALKTLLQF 138
            C I+L       AQ +   LEVDEELQP+K+ ++  V+G+ L+VH  + ++++LR AVSSFYDM  +  + LL+F
Sbjct:   10 CEINLSFPEEVDAQYVLQTLEVDEELQPEKIHRTLTVKGAELHVHFEATEIRLLRAAVSSFYDMSVLTARALLEF 84          
BLAST of EWM30171.1 vs. NCBI_GenBank
Match: gi|675215655|ref|XP_008916712.1| (hypothetical protein PPTG_19892 [Phytophthora parasitica INRA-310] >gi|568082927|gb|ETM97995.1| hypothetical protein PPTG_19892 [Phytophthora parasitica INRA-310])

HSP 1 Score: 73.9442 bits (180), Expect = 8.393e-14
Identity = 33/75 (44.00%), Postives = 50/75 (66.67%), Query Frame = 0
Query:   64 CRISLHLTSSSKAQLIQDVLEVDEELQPDKVCKSFAVEGSALNVHLVSCDLKVLRVAVSSFYDMLTVALKTLLQF 138
            C I+L       AQ +   LEVDEELQP+K+ ++  V+G+ L+VH  + ++++LR AVSSFYDM  +  + LL+F
Sbjct:   99 CEINLSFPEEVDAQYVLQTLEVDEELQPEKIHRTLTVKGAELHVHFEATEIRLLRAAVSSFYDMSVLTARALLEF 173          
BLAST of EWM30171.1 vs. NCBI_GenBank
Match: gi|669148802|ref|XP_008609963.1| (hypothetical protein SDRG_05991 [Saprolegnia diclina VS20] >gi|530738300|gb|EQC36542.1| hypothetical protein SDRG_05991 [Saprolegnia diclina VS20])

HSP 1 Score: 67.781 bits (164), Expect = 2.549e-12
Identity = 30/79 (37.97%), Postives = 45/79 (56.96%), Query Frame = 0
Query:   62 HHCRISLHLTSSSKAQLIQDVLEVDEELQPDKVCKSFAVEGSALNVHLVSCDLKVLRVAVSSFYDMLTVALKTLLQFDN 140
            + C I L   S+  A    + L VD+E+ P+K+ K  +  G  L  H  +C++++LR A SSFYDM  V  + LL+FD 
Sbjct:    7 YECEIVLDFASAEAATYAYETLNVDDEISPEKITKQLSTNGHQLIAHFWACEIRMLRAAASSFYDMALVTSRVLLEFDG 85          
BLAST of EWM30171.1 vs. NCBI_GenBank
Match: gi|953502275|emb|CEG36461.1| (EKC/KEOPS complex, subunit Pcc1 [Plasmopara halstedii])

HSP 1 Score: 69.3218 bits (168), Expect = 4.317e-12
Identity = 37/88 (42.05%), Postives = 53/88 (60.23%), Query Frame = 0
Query:   51 MASLKDPKATLHHCRISLHLTSSSKAQLIQDVLEVDEELQPDKVCKSFAVEGSALNVHLVSCDLKVLRVAVSSFYDMLTVALKTLLQF 138
            M+S   P A    C +SL       AQ +   LEVDEELQP  + ++  V G+ L+VH  + ++++LR AVSSFYDM  +  +TLL+F
Sbjct:    1 MSSSTHPFA----CDLSLSFRDKMDAQNVLQTLEVDEELQPKDIYRTMIVTGTELHVHFEATEIRLLRAAVSSFYDMSLLTARTLLEF 84          
BLAST of EWM30171.1 vs. NCBI_GenBank
Match: gi|298705734|emb|CBJ49042.1| (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 67.0106 bits (162), Expect = 5.543e-12
Identity = 31/79 (39.24%), Postives = 48/79 (60.76%), Query Frame = 0
Query:   62 HHCRISLHLTSSSKAQLIQDVLEVDEELQPDKVCKSFAVEGSALNVHLVSCDLKVLRVAVSSFYDMLTVALKTLLQFDN 140
            +HC   +   S+S A +    L VD ELQP+K+ ++  VEGS+L     + + + LRV +S FYDM +V  +T L+FD+
Sbjct:    5 YHCDAEVTFPSASLATIACRTLAVDAELQPNKIIRTLRVEGSSLLAKFEATEARTLRVVLSGFYDMASVVARTFLEFDD 83          
BLAST of EWM30171.1 vs. NCBI_GenBank
Match: gi|1173958618|gb|OQS04951.1| (hypothetical protein THRCLA_20755 [Thraustotheca clavata])

HSP 1 Score: 67.0106 bits (162), Expect = 6.102e-12
Identity = 31/78 (39.74%), Postives = 45/78 (57.69%), Query Frame = 0
Query:   62 HHCRISLHLTSSSKAQLIQDVLEVDEELQPDKVCKSFAVEGSALNVHLVSCDLKVLRVAVSSFYDMLTVALKTLLQFD 139
            ++C I L   S   A    + L VDEE+ PDK+ K   V+ + L     +C++++LR A SSFYDM  V  + LL+FD
Sbjct:    7 YNCEIVLDFASKEAAMYAYESLNVDEEISPDKITKKLLVQDNRLIAQFWACEIRMLRAAASSFYDMALVVTRVLLEFD 84          
The following BLAST results are available for this feature:
BLAST of EWM30171.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585112828|gb|EWM30171.1|3.189e-102100.00EKC/KEOPS complex, subunit Pcc1 [Nannochloropsis g... [more]
gi|553193653|ref|XP_005855812.1|7.206e-62100.00hypothetical protein NGA_2086400, partial [Nannoch... [more]
gi|695376960|ref|XP_009515900.1|3.714e-1547.95hypothetical protein PHYSODRAFT_469149, partial [P... [more]
gi|566020609|gb|ETI43520.1|1.001e-1442.05hypothetical protein F443_11539 [Phytophthora para... [more]
gi|567958065|gb|ETK83659.1|1.204e-1444.00hypothetical protein L915_11231 [Phytophthora para... [more]
gi|675215655|ref|XP_008916712.1|8.393e-1444.00hypothetical protein PPTG_19892 [Phytophthora para... [more]
gi|669148802|ref|XP_008609963.1|2.549e-1237.97hypothetical protein SDRG_05991 [Saprolegnia dicli... [more]
gi|953502275|emb|CEG36461.1|4.317e-1242.05EKC/KEOPS complex, subunit Pcc1 [Plasmopara halste... [more]
gi|298705734|emb|CBJ49042.1|5.543e-1239.24conserved unknown protein [Ectocarpus siliculosus][more]
gi|1173958618|gb|OQS04951.1|6.102e-1239.74hypothetical protein THRCLA_20755 [Thraustotheca c... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna507rna507Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications