EWM30171.1, cds507 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM30171.1 vs. NCBI_GenBank
Match: gi|585112828|gb|EWM30171.1| (EKC/KEOPS complex, subunit Pcc1 [Nannochloropsis gaditana]) HSP 1 Score: 297.745 bits (761), Expect = 3.189e-102 Identity = 144/144 (100.00%), Postives = 144/144 (100.00%), Query Frame = 0
Query: 1 MARHGGENTTICFSCRGMRYILWRCLGDSRQVACLLLSYTPFHLLTAVQDMASLKDPKATLHHCRISLHLTSSSKAQLIQDVLEVDEELQPDKVCKSFAVEGSALNVHLVSCDLKVLRVAVSSFYDMLTVALKTLLQFDNENGL 144
MARHGGENTTICFSCRGMRYILWRCLGDSRQVACLLLSYTPFHLLTAVQDMASLKDPKATLHHCRISLHLTSSSKAQLIQDVLEVDEELQPDKVCKSFAVEGSALNVHLVSCDLKVLRVAVSSFYDMLTVALKTLLQFDNENGL
Sbjct: 1 MARHGGENTTICFSCRGMRYILWRCLGDSRQVACLLLSYTPFHLLTAVQDMASLKDPKATLHHCRISLHLTSSSKAQLIQDVLEVDEELQPDKVCKSFAVEGSALNVHLVSCDLKVLRVAVSSFYDMLTVALKTLLQFDNENGL 144
BLAST of EWM30171.1 vs. NCBI_GenBank
Match: gi|553193653|ref|XP_005855812.1| (hypothetical protein NGA_2086400, partial [Nannochloropsis gaditana CCMP526] >gi|422293248|gb|EKU20548.1| hypothetical protein NGA_2086400, partial [Nannochloropsis gaditana CCMP526]) HSP 1 Score: 194.126 bits (492), Expect = 7.206e-62 Identity = 96/96 (100.00%), Postives = 96/96 (100.00%), Query Frame = 0
Query: 49 QDMASLKDPKATLHHCRISLHLTSSSKAQLIQDVLEVDEELQPDKVCKSFAVEGSALNVHLVSCDLKVLRVAVSSFYDMLTVALKTLLQFDNENGL 144
QDMASLKDPKATLHHCRISLHLTSSSKAQLIQDVLEVDEELQPDKVCKSFAVEGSALNVHLVSCDLKVLRVAVSSFYDMLTVALKTLLQFDNENGL
Sbjct: 1 QDMASLKDPKATLHHCRISLHLTSSSKAQLIQDVLEVDEELQPDKVCKSFAVEGSALNVHLVSCDLKVLRVAVSSFYDMLTVALKTLLQFDNENGL 96
BLAST of EWM30171.1 vs. NCBI_GenBank
Match: gi|695376960|ref|XP_009515900.1| (hypothetical protein PHYSODRAFT_469149, partial [Phytophthora sojae] >gi|348688811|gb|EGZ28625.1| hypothetical protein PHYSODRAFT_469149, partial [Phytophthora sojae]) HSP 1 Score: 74.7146 bits (182), Expect = 3.714e-15 Identity = 35/73 (47.95%), Postives = 51/73 (69.86%), Query Frame = 0
Query: 66 ISLHLTSSSKAQLIQDVLEVDEELQPDKVCKSFAVEGSALNVHLVSCDLKVLRVAVSSFYDMLTVALKTLLQF 138
ISL AQ + LEVD+ELQPDK+ ++ V+G+ L+VH + ++++LR AVSSFYDM +A +TLL+F
Sbjct: 1 ISLTFPEEVDAQYVLQTLEVDDELQPDKIHRTLTVKGAELHVHFEATEIRLLRAAVSSFYDMGVLAARTLLEF 73
BLAST of EWM30171.1 vs. NCBI_GenBank
Match: gi|566020609|gb|ETI43520.1| (hypothetical protein F443_11539 [Phytophthora parasitica P1569] >gi|568046430|gb|ETM43539.1| hypothetical protein L914_11061 [Phytophthora parasitica]) HSP 1 Score: 73.9442 bits (180), Expect = 1.001e-14 Identity = 37/88 (42.05%), Postives = 54/88 (61.36%), Query Frame = 0
Query: 51 MASLKDPKATLHHCRISLHLTSSSKAQLIQDVLEVDEELQPDKVCKSFAVEGSALNVHLVSCDLKVLRVAVSSFYDMLTVALKTLLQF 138
M S K P C I+L AQ + LEVDEELQP+K+ ++ V+G+ L+VH + ++++LR AVSSFYDM + + LL+F
Sbjct: 1 MDSAKHP----FECEINLSFPEEVDAQYVLQTLEVDEELQPEKIHRTLTVKGAELHVHFEATEIRLLRAAVSSFYDMSVLTARALLEF 84
BLAST of EWM30171.1 vs. NCBI_GenBank
Match: gi|567958065|gb|ETK83659.1| (hypothetical protein L915_11231 [Phytophthora parasitica] >gi|567986759|gb|ETL37076.1| hypothetical protein L916_11128 [Phytophthora parasitica] >gi|568016041|gb|ETL90218.1| hypothetical protein L917_11032 [Phytophthora parasitica] >gi|570324310|gb|ETO72258.1| hypothetical protein F444_11610 [Phytophthora parasitica P1976] >gi|570948152|gb|ETP13409.1| hypothetical protein F441_11459 [Phytophthora parasitica CJ01A1] >gi|570980943|gb|ETP41477.1| hypothetical protein F442_11433 [Phytophthora parasitica P10297]) HSP 1 Score: 73.9442 bits (180), Expect = 1.204e-14 Identity = 33/75 (44.00%), Postives = 50/75 (66.67%), Query Frame = 0
Query: 64 CRISLHLTSSSKAQLIQDVLEVDEELQPDKVCKSFAVEGSALNVHLVSCDLKVLRVAVSSFYDMLTVALKTLLQF 138
C I+L AQ + LEVDEELQP+K+ ++ V+G+ L+VH + ++++LR AVSSFYDM + + LL+F
Sbjct: 10 CEINLSFPEEVDAQYVLQTLEVDEELQPEKIHRTLTVKGAELHVHFEATEIRLLRAAVSSFYDMSVLTARALLEF 84
BLAST of EWM30171.1 vs. NCBI_GenBank
Match: gi|675215655|ref|XP_008916712.1| (hypothetical protein PPTG_19892 [Phytophthora parasitica INRA-310] >gi|568082927|gb|ETM97995.1| hypothetical protein PPTG_19892 [Phytophthora parasitica INRA-310]) HSP 1 Score: 73.9442 bits (180), Expect = 8.393e-14 Identity = 33/75 (44.00%), Postives = 50/75 (66.67%), Query Frame = 0
Query: 64 CRISLHLTSSSKAQLIQDVLEVDEELQPDKVCKSFAVEGSALNVHLVSCDLKVLRVAVSSFYDMLTVALKTLLQF 138
C I+L AQ + LEVDEELQP+K+ ++ V+G+ L+VH + ++++LR AVSSFYDM + + LL+F
Sbjct: 99 CEINLSFPEEVDAQYVLQTLEVDEELQPEKIHRTLTVKGAELHVHFEATEIRLLRAAVSSFYDMSVLTARALLEF 173
BLAST of EWM30171.1 vs. NCBI_GenBank
Match: gi|669148802|ref|XP_008609963.1| (hypothetical protein SDRG_05991 [Saprolegnia diclina VS20] >gi|530738300|gb|EQC36542.1| hypothetical protein SDRG_05991 [Saprolegnia diclina VS20]) HSP 1 Score: 67.781 bits (164), Expect = 2.549e-12 Identity = 30/79 (37.97%), Postives = 45/79 (56.96%), Query Frame = 0
Query: 62 HHCRISLHLTSSSKAQLIQDVLEVDEELQPDKVCKSFAVEGSALNVHLVSCDLKVLRVAVSSFYDMLTVALKTLLQFDN 140
+ C I L S+ A + L VD+E+ P+K+ K + G L H +C++++LR A SSFYDM V + LL+FD
Sbjct: 7 YECEIVLDFASAEAATYAYETLNVDDEISPEKITKQLSTNGHQLIAHFWACEIRMLRAAASSFYDMALVTSRVLLEFDG 85
BLAST of EWM30171.1 vs. NCBI_GenBank
Match: gi|953502275|emb|CEG36461.1| (EKC/KEOPS complex, subunit Pcc1 [Plasmopara halstedii]) HSP 1 Score: 69.3218 bits (168), Expect = 4.317e-12 Identity = 37/88 (42.05%), Postives = 53/88 (60.23%), Query Frame = 0
Query: 51 MASLKDPKATLHHCRISLHLTSSSKAQLIQDVLEVDEELQPDKVCKSFAVEGSALNVHLVSCDLKVLRVAVSSFYDMLTVALKTLLQF 138
M+S P A C +SL AQ + LEVDEELQP + ++ V G+ L+VH + ++++LR AVSSFYDM + +TLL+F
Sbjct: 1 MSSSTHPFA----CDLSLSFRDKMDAQNVLQTLEVDEELQPKDIYRTMIVTGTELHVHFEATEIRLLRAAVSSFYDMSLLTARTLLEF 84
BLAST of EWM30171.1 vs. NCBI_GenBank
Match: gi|298705734|emb|CBJ49042.1| (conserved unknown protein [Ectocarpus siliculosus]) HSP 1 Score: 67.0106 bits (162), Expect = 5.543e-12 Identity = 31/79 (39.24%), Postives = 48/79 (60.76%), Query Frame = 0
Query: 62 HHCRISLHLTSSSKAQLIQDVLEVDEELQPDKVCKSFAVEGSALNVHLVSCDLKVLRVAVSSFYDMLTVALKTLLQFDN 140
+HC + S+S A + L VD ELQP+K+ ++ VEGS+L + + + LRV +S FYDM +V +T L+FD+
Sbjct: 5 YHCDAEVTFPSASLATIACRTLAVDAELQPNKIIRTLRVEGSSLLAKFEATEARTLRVVLSGFYDMASVVARTFLEFDD 83
BLAST of EWM30171.1 vs. NCBI_GenBank
Match: gi|1173958618|gb|OQS04951.1| (hypothetical protein THRCLA_20755 [Thraustotheca clavata]) HSP 1 Score: 67.0106 bits (162), Expect = 6.102e-12 Identity = 31/78 (39.74%), Postives = 45/78 (57.69%), Query Frame = 0
Query: 62 HHCRISLHLTSSSKAQLIQDVLEVDEELQPDKVCKSFAVEGSALNVHLVSCDLKVLRVAVSSFYDMLTVALKTLLQFD 139
++C I L S A + L VDEE+ PDK+ K V+ + L +C++++LR A SSFYDM V + LL+FD
Sbjct: 7 YNCEIVLDFASKEAAMYAYESLNVDEEISPDKITKKLLVQDNRLIAQFWACEIRMLRAAASSFYDMALVVTRVLLEFD 84 The following BLAST results are available for this feature:
BLAST of EWM30171.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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