rna5068, rna5068 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna5068
Unique Name	rna5068
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	3218
Alignment location	CM002465.1:23282..24034 +

Link to JBrowse

Properties


Property Name	Value
Product	hypothetical protein
Orig transcript id	gnl\|cribi\|Naga_100251g2.7586.mrna
Orig protein id	gnl\|cribi\|Naga_100251g2.7586
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002465.1	supercontig	CM002465.1:23282..24034 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100251g2	gene4892	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna5068	rna5068-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM25617.1	cds5056	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002465.1:23282..24034+
coding sequence from alignment at CM002465.1:23282..24034+

mRNA sequence

>rna5068 ID=rna5068|Name=rna5068|organism=Nannochloropsis gaditana|type=mRNA|length=3218bp
ATCCCTGCCAAGACGGTCGTGCGCGCCGCCTCGTACACTGCCAAATATTC
GATGCTAGACTAATCGTTTTTCTTGTGATATCGGAAATGTACTCAAACAA
GTAGACGACCGACCTTGACAAGGAAAGACACGGTAGTTGATCCATTTTTT
CGGGTCATTTTTTCGTCCTTGGGCGCCATCGGCGGGCGGCGACAGGGGAG
TAGGCGAACGTTTTGTGCAAAATTCAACACCAGCCCAATCCGTGCAAATG
CGCAAACCAATCAATTTAAAACTGTCAGTCATGGACATACATCACTAATT
TGAGAATATAGTTGTACGAGTAGTGTCGGAGTGGCTGTCTCGGTATCGAG
TGGTATGTCAGGACGCGGTCCCAATGGACTTCAGCCACCCCGTCCCCATG
CCCATACCACCGCCGACATGCGGCATTGTGTGCTCGTTCCTGCACCACTG
TCGTCTATTTTCTCTCAAACTCTTTCTCAAATGCACGAAAATAGGTGAAT
CCTCCCGTGTAATCACAAGCGGCCGGGTCTTGATTTTTAAAGGCGCTAAG
GCCTGTCTGACAGGCAACAGCCTTAGCTGCCTGAGCTCGGAGGAGGACTC
GCAGAGTTCTGCTTGCTCCCGCTTCATTAATTTTCCACCGTTGACAAAGG
TGTCGTGACATATTGAGTGTCATGAATAAAAATGATACAAGCACGCACTT
CTCAGAGGCCTACTACGCTGTCCCATCTTCCTCGCCTCACTCTGAAGACG
TTGGGAATGTAGAGCCGAGAGCCTCGCCCACTGAGCAGAATCGCAGCATA
GTTCCCAGCGCCAATAAAGCACTGGTCGATATTACTCTGTCACCGCCCCG
TGGGGAAGACGAGAAAAGCACCGTGGTCGTGCGGAGCGAAAATGAAATTG
TTCCGACGGACATCAAGGCAACGAGCAGTAGCAGCAGTCTTAGCACGTCC
GGCACCCCACCATGCCACGTCCTTGGAAGGCGGAGCTCGCGACACAGTGG
GTACACCCTTGCCCTCCTGGCTGCCATCATGGGCAACGTCCTCGAGTTCT
ACGATTTCAGTGTCTACGCTTTTTTCGCACCCGAGATTGGGCAGCTATTC
TTTTCCAGTGGCTCGGATACGGTGCGGGCTATCCAGACCTTCACCGTCTT
TGCCGGCGGCTTCTTGATGCGGCCGGTGGGCTCGGTGGTGCTGGGGGCGG
TGGGGGACAAGTACGGGACGGCCGCTGCCCTCAAGTGGTCGATCGGGCTG
ATGACGGTGCCGACCATCGTCACGGGCCTGCTCCCCACCTACTCCAAGAT
CGGCCTTGCCGCGCCCCTCCTCCTCACACTCTGCCGGCTCCTCCAAGGCC
TCTCGGTGGGGGGGGAGCTGATCGGCGCCCTCCTGCACACGGCCGACCAC
TCCCCAGCCGAGCACCGCGGTTTCTTCTGCGGCTTGGTGGCGGTCTTCGG
GAGCATGGGTAACCTGGTGGGCTCCCTGGTGAGTGTGCTGATGCGACACG
CTCTCTCCAAGCAGGAGCTGCTCTCCTGGGGCTGGCGCATTCCCTTCTTG
GCCGGCTCGGTGCTGGGCCTGGTGGGGATCTTCCTACGGACCAAGACCGG
CGCCCTGAAGCATGGCGGGGAGGCGGGCAGGCGGCCGACGAGGGAGGAAC
AGGTCTTGATCGAGATGGTGGAGTGTCCGATAGCGGTGGAGGAGGAAACG
GTGGCTGCCTACCGGGAAGCGGCGCGAATGGAGGAGGAGGAGGAGGAGGA
GGAGGAAGGGGAACAGCGAGGGAAAGAGGGAGAGACAGGGGCCGTGGCAG
CGCGCCCCTCCCACCCACGGTCCTTTTGTGGGATCCTGCGGGAGGCGGCG
GCGGGGGACAAGCCGCGCTTCATACGCGTGGTCGTCCTAGCTGCCCTCAA
CAACTCTCTCTTTTACTTCAACTTTGTCTGGCTCGGCACCTATATGGCGG
AGCTCGCGCCCAACCCCCTGGGGGCGGCGCAAGCCTTCAGTGTCACGTGC
GTGGCCCAAGCCGTTTTCATCTTTGGAAATCCTTTTTGGGGGGCCATGGG
GGACTGGGGGGGCGGGCTGGCGAAGCGCCTCCGCTGGAACATCGTGGGCG
TGGTCCTAAGCTGCTTCCTCCCTCCCTGCCTCTTCCTCCTCCTCCGCTCC
GGACGCGCCTCCCTGAGCTTCCTATTCGCTGCCCTCACCGGTCTCTTGAT
GGGCTTCACCGTCTCGGGAAATTACTACGCCTGGGTCTGCGAGAGCCTGA
ATGAATCCCCCTCTCGGGTTCTCACCACCTCGGTTGCCTACAACGTCGGG
GCCGTCGTGGGCGGATGCACCCCAATGCTGGCGAGTGCCCTTTCTGCGAG
TCCTATATTCCTCGCGCCCATCTTGCCTTTGTCGGCGGTGGCAGCGGCGG
TGGCGGTGGTGCTGGGCCGGTACGAATGGGGTGAATACGTGAAGAGAAAG
GCGGAGGGCGGGAAGGGGGGGCGGGAGGAGTTCTTGGCCCTGCGCGTGGA
GGAGGGGAAGGAGGGGAAAGGGAAAATGGCGAAAGCGAAAGTCAAAGCAA
GGGGGGAGGAGCCTGCGGACACCAGCTAAAGGAGAGGAAGGGATGCGGAG
GACTCTGTCTCGAGCCATCGCTTTGAAGGAGTAGGGGGCCAGGGAGCGAG
AAGAGAAAACGAGCAGCCGCATGGTCGACTTGTGTTGAATAGAGAAAAGA
GTGGGGATCTCTGGGAGCAGGGGAGCTTCAAAGGCAAGATCCAGAGTTAG
AGACGGGGGAAAAGAGAAGAGACGTTGTAGAGGCAAGTGAAAGTGTGTGG
TAGGATTCGAGCATTGTGAGATCTCGCACAGTACCTTGATACCCGAGAGG
AAGGGTCTGGATCTTTGAGGAGCATGGAAGAGGATGGAGAGATGAGACGG
ACTGAGAGCCCGACGGACCGTGGATGGGGTCACGGAACGCCCGCCAAGGA
TTTTTGACTGTCGTCGATGGATGTAGGAGTACATCTACTTGCACAGGACT
CGAAGCTTAGGCTGTGTTGAATGCATTTCTGCACATAGTGGGTATTTATT
ACGTGTGGTGGTGAAAGGATCCAAAGCGTCAATCTTAACGCGGTAAAACG
AACCAAATTGATCTGGAAATAAGAATGGAAGGGAATAGGTGCAACAGTAA
ACGTTGCCGAAATCCGCTTGCCCTGGCCGCGATACGTCGAATGAAAACGC
GAATGACCTTGGGCCATG

protein sequence of rna5068

>rna5068-protein ID=rna5068-protein|Name=rna5068|organism=Nannochloropsis gaditana|type=polypeptide|length=194bp
MDQLPCLSLSRSVVYLFEYISDITRKTISLASNIWQCTRRRARPSWQGSS
LSASQLVCRGPYLFLSTTKKHDHESRLHLTPRPMSCEAEILYQMQFCGLT
PILRVPYRLPETILCKGFARNLANSYFDLLPSCNIHSYRGRSAFTKRVQN
AFLGRVDYLYVSFMLDSKQENACNALQITRSFLIVPGMTLCARG

mRNA from alignment at CM002465.1:23282..24034+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna5068 ID=rna5068|Name=rna5068|organism=Nannochloropsis gaditana|type=mRNA|length=753bp|location=Sequence derived from alignment at CM002465.1:23282..24034+ (Nannochloropsis gaditana)
ATGGATCAACTACCGTGTCTTTCCTTGTCAAGGTCGGTCGTCTACTTGTT
TGAGTACATTTCCGATATCACAAGAAAAACGATTAGTCTAGCATCGAATA
TTTGGCAGTGTACGAGGCGGCGCGCACGACCGTCTTGGCAGGGAtcgtcc
ctctccgcctcccaaCTCGTTTGCCGTGGCCCATACCTTTTTCTGTCCAC
CACCAAGAAACATGACCATGAATCTCGTTTACATTTGACACCACGTCCAA
TGGTTGGTTATATCACATATATAAATCGAACTCACTAGTGGTAAATGTTT
TGTGGCATTTGCGAGAAAGCATGGTAGTCTTGTGAGGCCGAGATACTGTA
CCAGATGCAGTTCTGTGGCTTGACACCCATACTTAGGGTACCTTATCGTC
TTCCGTTCAGAAAGCTATGATCGAGCTTAAAATTTACAGCTTCTCACGCA
CTTGAACATGAAAATTTACCCTTGATTCGTTCCATGTCTTGAAACAGAGA
AACCATTCTCTGTAAAGGCTTTGCAAGGAATCTTGCAAACAGTTATTTtg
acctcctgccttcctgtAACATACACTCATACCGGGGGAGAAGCGCTTTT
ACGAAACGAGTCCAAAACGCATTTTTGGGGAGGGTTGACTACCTCTACGT
TTCATTCATGTTGGATTCAAAACAAGAAAACGCGTGCAATGCATTACAAA
TCACACGTTCATTCCTTATTGTTCCTGGTATGACCTTGTGCGcacgagga
tga

Coding sequence (CDS) from alignment at CM002465.1:23282..24034+

>rna5068 ID=rna5068|Name=rna5068|organism=Nannochloropsis gaditana|type=CDS|length=1755bp|location=Sequence derived from alignment at CM002465.1:23282..24034+ (Nannochloropsis gaditana)
ATGGATCAACTACCGTGTCTTTCCTTGTCAAGGTCGGTCGTCTACTTGTT
TGAGTACATTTCCGATATCACAAGAAAAACGATTAGTCTAGCATCGAATA
TTTGGCAGTGTACGAGGCGGCGCGCACGACCGTCTTGGCAGGGAtcgtcc
ctctccgcctcccaaCTCGTTTGCCGTGGCCCATACCTTTTTCTGTCCAC
CACCAAGAAACATGACCATGAATCTCGTTTACATTTGACACCACGTCCAA
TGTCTTGTGAGGCCGAGATACTGTACCAGATGCAGTTCTGTGGCTTGACA
CCCATACTTAGGGTACCTTATCGTCTTCCAGAAACCATTCTCTGTAAAGG
CTTTGCAAGGAATCTTGCAAACAGTTATTTtgacctcctgccttcctgtA
ACATACACTCATACCGGGGGAGAAGCGCTTTTACGAAACGAGTCCAAAAC
GCATTTTTGGGGAGGGTTGACTACCTCTACGTTTCATTCATGTTGGATTC
AAAACAAGAAAACGCGTGCAATGCATTACAAATCACACGTTCATTCCTTA
TTGTTCCTGGTATGACCTTGTGCGcacgaggatgaATGGATCAACTACCG
TGTCTTTCCTTGTCAAGGTCGGTCGTCTACTTGTTTGAGTACATTTCCGA
TATCACAAGAAAAACGATTAGTCTAGCATCGAATATTTGGCAGTGTACGA
GGCGGCGCGCACGACCGTCTTGGCAGGGAtcgtccctctccgcctcccaa
CTCGTTTGCCGTGGCCCATACCTTTTTCTGTCCACCACCAAGAAACATGA
CCATGAATCTCGTTTACATTTGACACCACGTCCAATGTCTTGTGAGGCCG
AGATACTGTACCAGATGCAGTTCTGTGGCTTGACACCCATACTTAGGGTA
CCTTATCGTCTTCCAGAAACCATTCTCTGTAAAGGCTTTGCAAGGAATCT
TGCAAACAGTTATTTtgacctcctgccttcctgtAACATACACTCATACC
GGGGGAGAAGCGCTTTTACGAAACGAGTCCAAAACGCATTTTTGGGGAGG
GTTGACTACCTCTACGTTTCATTCATGTTGGATTCAAAACAAGAAAACGC
GTGCAATGCATTACAAATCACACGTTCATTCCTTATTGTTCCTGGTATGA
CCTTGTGCGcacgaggatgaATGGATCAACTACCGTGTCTTTCCTTGTCA
AGGTCGGTCGTCTACTTGTTTGAGTACATTTCCGATATCACAAGAAAAAC
GATTAGTCTAGCATCGAATATTTGGCAGTGTACGAGGCGGCGCGCACGAC
CGTCTTGGCAGGGAtcgtccctctccgcctcccaaCTCGTTTGCCGTGGC
CCATACCTTTTTCTGTCCACCACCAAGAAACATGACCATGAATCTCGTTT
ACATTTGACACCACGTCCAATGTCTTGTGAGGCCGAGATACTGTACCAGA
TGCAGTTCTGTGGCTTGACACCCATACTTAGGGTACCTTATCGTCTTCCA
GAAACCATTCTCTGTAAAGGCTTTGCAAGGAATCTTGCAAACAGTTATTT
tgacctcctgccttcctgtAACATACACTCATACCGGGGGAGAAGCGCTT
TTACGAAACGAGTCCAAAACGCATTTTTGGGGAGGGTTGACTACCTCTAC
GTTTCATTCATGTTGGATTCAAAACAAGAAAACGCGTGCAATGCATTACA
AATCACACGTTCATTCCTTATTGTTCCTGGTATGACCTTGTGCGcacgag
gatga

Synonyms

Publications