EWM25617.1, cds5056 (CDS) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	EWM25617.1
Unique Name	cds5056
Type	CDS
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Alignment location	CM002465.1:23282..23533 +
Alignment location	CM002465.1:23609..23685 +
Alignment location	CM002465.1:23779..24034 +

Link to JBrowse

Properties


Property Name	Value
Protein id	EWM25617.1
Product	hypothetical protein
Orig transcript id	gnl\|cribi\|Naga_100251g2.7586.mrna
Gbkey	CDS

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002465.1	supercontig	CM002465.1:23282..23533 +
CM002465.1	supercontig	CM002465.1:23609..23685 +
CM002465.1	supercontig	CM002465.1:23779..24034 +

Analyses

This CDS is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST analysis for N. gaditana B-31	2020-04-07
InterPro analysis for N. gaditana B-31	2020-04-06
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

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BLAST of EWM25617.1 vs. NCBI_GenBank
Match: gi|585107441|gb|EWM25617.1| (hypothetical protein Naga_100251g2 [Nannochloropsis gaditana])

HSP 1 Score: 402.905 bits (1034), Expect = 3.335e-142
Identity = 194/194 (100.00%), Postives = 194/194 (100.00%), Query Frame = 0

Query:    1 MDQLPCLSLSRSVVYLFEYISDITRKTISLASNIWQCTRRRARPSWQGSSLSASQLVCRGPYLFLSTTKKHDHESRLHLTPRPMSCEAEILYQMQFCGLTPILRVPYRLPETILCKGFARNLANSYFDLLPSCNIHSYRGRSAFTKRVQNAFLGRVDYLYVSFMLDSKQENACNALQITRSFLIVPGMTLCARG 194
            MDQLPCLSLSRSVVYLFEYISDITRKTISLASNIWQCTRRRARPSWQGSSLSASQLVCRGPYLFLSTTKKHDHESRLHLTPRPMSCEAEILYQMQFCGLTPILRVPYRLPETILCKGFARNLANSYFDLLPSCNIHSYRGRSAFTKRVQNAFLGRVDYLYVSFMLDSKQENACNALQITRSFLIVPGMTLCARG
Sbjct:    1 MDQLPCLSLSRSVVYLFEYISDITRKTISLASNIWQCTRRRARPSWQGSSLSASQLVCRGPYLFLSTTKKHDHESRLHLTPRPMSCEAEILYQMQFCGLTPILRVPYRLPETILCKGFARNLANSYFDLLPSCNIHSYRGRSAFTKRVQNAFLGRVDYLYVSFMLDSKQENACNALQITRSFLIVPGMTLCARG 194

The following BLAST results are available for this feature:

BLAST of EWM25617.1 vs. NCBI_GenBank

BLAST of EWM25617.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 1


Match Name	E-value	Identity	Description
gi\|585107441\|gb\|EWM25617.1\|	3.335e-142	100.00	hypothetical protein Naga_100251g2 [Nannochloropsi...	[more]

Relationships

This CDS is a part of the following mRNA feature(s):


Feature Name	Unique Name	Species	Type
rna5068	rna5068	Nannochloropsis gaditana (N. gaditana B-31)	mRNA

Sequences

Synonyms

Publications