rna5065, rna5065 (mRNA) Nannochloropsis gaditana

Overview
Namerna5065
Unique Namerna5065
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1684
Alignment locationCM002465.1:14732..16163 -

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100251g6.7590.mrna
Orig protein idgnl|cribi|Naga_100251g6.7590
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002465.1supercontigCM002465.1:14732..16163 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100251g6gene4889Nannochloropsis gaditana (N. gaditana B-31)gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM25621.1cds5053Nannochloropsis gaditana (N. gaditana B-31)CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna5065rna5065-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna5065 ID=rna5065|Name=rna5065|organism=Nannochloropsis gaditana|type=mRNA|length=1684bp
GGAGGTCACCAGACCCTGCGTCCTCCTGTAGTCGCGTACGAGGGAACGTA
AGGGACAGACCATCTCACCTCTGTATGAATGCTGTATTCTTCCCAATCTC
TGGCATGACTTGTTCGGGCGAGGGCTGGCTTGTTTGTTTCCAGGTCCCAA
GCTCCAAGGTCGACGCCCTCGCCTGACGGCTTGAAATTCGCGAGGTTCCC
CCTCATGGGGCGAGAAGAGCGTGTCTTTCGCACGGAGACCCATTTTGGAA
CACAAATTTCGAGTCCTGCCACTGGATTGGAAAGCGTTATCTTTCTTATC
TGAACTGCCGTGATGCACATGTGACTCTCTCGTGGCGTTTCGCCCTTTTA
CCCTCCATCCTCAGGAAGTCAAGATACTCCCCCTCCATCACAAGCACTCC
CACATGGTCTCCTCGGAGCCCGACACCTCTCCACTTGGGAGCCGCCTCCT
TCCGTGGGCTAATCTTGGTGCCTACATTCTCAATATTGTGGCGACGTCTG
TGATTGGAACCAGCGGCAAAGTGGGCAAAACCAATTCAGAGGTCTCAGCT
GCCTACCCGACCCTCTTCACGCCCGCCGGCTATGCGTTCTCCATCTGGGG
ACTCATCTTCGCCATGGAAGGCGCCTTCGCCCTCTATCAGCTCCTGCCCT
CTGTCCGCAGCACCCCCGCAATCCAGAAGGGCGTTGGGCCGTGGTGGATC
CTCATGGTGCTCTTGCAGCTTGGCTGGTCCCTCTCCTTCGCCACTGAGTC
CATCCCCCTCTCCATGTTCTTCATGGTCGGCATCTTCCTCTCCCTCCTTG
CCCTCACCCTCTCCCTTCGCCGGGCCCTCCCCCGGCGTCCCTCTCTCGCC
CAGTCCATCTGCCTGCTCCTCCCCTTTTCCCTCAATTTCGGCTGGATCAC
CGCTGCGCTCCTCGCCAACGCCAACATTGTGGCCGTCTATCGGGACTCGG
AGGACCTTGCCTCCCACCTGGCCACCGCCGTCTCCTCCTGCGTGGTACTG
GGCCTCGCCGCCCTGCTCGGGGGCTTCCGCCTCGTCGATCCGATCTTCTG
CTTGGTCCTTGTCTGGGCGGGCACGGCGATCGCCAAGCAGCTCTCGGCGC
CCGTGGCCTCCATCTCCGCCTCTTTCCCGCCTCCAGTCACTCAGGGCTTG
AGCCAGGCTGTGTTTGTGCTGGTCGGTTTCGCCGCCCTGGCCGCCTTGCA
CGCTGCGGGCAGGAGGGTGCTGCTCAGGCGTGGGGAAGGGGAGGATACGC
AGGGGGAGGAAAAGGAGGGCGAGAGCAGGCAGGGGGACACAGGGTCGCCG
GCGGGCGTGCGAGCAGCGGCCCAGGCGCTGCTGAAACCCTGAGGCGGGAG
GGGTTGAAGAAGATGGGGGTGTGGCGGTGACGGAGAGGGAAGAATTGTAG
CTAGCATGCGCAAATAGATAGGAAGGAGGTGGTTCATGGGAAAGGTGGGT
CGTGGTAATGTGCAAGTGGATGGCGAGGAAACGAAGTGTTCTGGAGATAG
GTGGGGGGTGACTCGGGACGGTGTATGGGATGGTCGAAGAGAGGCAGTTG
TAGTTGCAATTGAAAAAGAAATAAAAGCAATGCCATTGCGCCAAGCCTGC
TCAGATGGTCGATGGCGTTTAACGCTGCAATGTCGATGTCGCCGAAAGTT
GCTTTTGGCAAACCTCGAAGTCCTGTCGGAGGGA
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protein sequence of rna5065

>rna5065-protein ID=rna5065-protein|Name=rna5065|organism=Nannochloropsis gaditana|type=polypeptide|length=375bp
MQQEDTTAHTSISVATSKKPDEGQHMMPPAAPVEDSTLRFNTCITTRSNG
STASSISQKGTLDVMFLGTGVSIAVPNMGHVLEGHCATCMRAHSNPASKD
RRNNVSIAILVNGTGQGPADSDRDCILVDAGKTMRDAILRRFPAAGVRSV
QALLLTHDHADATFGLDDLRDLQMKEHEEGVGIHLLDEPIDVYLQDATLT
ALKHQFGYLVGATPWADKARRILQRNVPVLAWHPLATDDASFELTRSRVP
VRAFPVFHGGEYVSLGFAFGQPGEFVYISDVKRIPPPSMAFLQSLPPIQT
LVVDCISTTETSHYSHFNLAEALALVDTLRPRHTYLTGMCCEVGAHEEVE
EKLRGMGYPHVSLAWDGMVLGGLRV
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mRNA from alignment at CM002465.1:14732..16163-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna5065 ID=rna5065|Name=rna5065|organism=Nannochloropsis gaditana|type=mRNA|length=1432bp|location=Sequence derived from alignment at CM002465.1:14732..16163- (Nannochloropsis gaditana)
ACGATGCCACGCACACAGACATGACTATGCCTACAACATCTGCCTTCTTG
GAACCAGTTTCCGGGCCTTTGTTGTGCCCCAGGCGGCGGAGACATCACGG
CAGAGGGCCCTTCATGAGGCAGCGACGACCTTGAAGCTTTTCCTTCTCGA
TCGAGGACTCGGGGCTGGATTGTCTTCCTTCACACGGTGCCCATCCCCTC
CCAGCGCGCTCGCCATGCAACCATGTCATCTGGTCCGATGCACTGGCGTA
CACGCATTAATATTCATCGTCCTATGACAGAGAAGGCAACAAGATTGCAA
TATCATGCAACAAGAGGATACAACAGCCCATACGAGCATATCCGTGGCCA
CGTCAAAGAAGCCTGATGAGGGCCAACACATGATGCCGCCGGCTGCGCCC
GTTGAGGACTCGACTCTAAGGTTTAACACCTGCATAACAACACGAAGCAA
TGGAAGTACAGCAAGCTCGATCTCTCAGAAAGGCACGCTGGATGTGATGT
TCCTCGGAACAGGAGTGAGCATCGCGGTGCCTAATATGGGCCACGTCCTG
GAGGGGCATTGCGCCACCTGCATGCGTGCCCACTCCAACCCCGCGAGCAA
GGACCGGCGGAACAATGTCTCAATAGCCATTCTGGTCAATGGCACAGGTC
AGGGCCCAGCGGATAGCGACCGTGACTGCATTTTGGTGGATGCTGGTAAG
ACGATGCGGGACGCGATCTTGCGAAGATTCCCAGCGGCGGGCGTGAGGAG
CGTGCAGGCCCTCTTGCTCACGCACGACCACGCGGACGCCACATTCGGCC
TGGACGACCTGCGAGACTTGCAAATGAAGGAGCACGAGGAAGGGGTGGGG
ATCCACCTGTTGGACGAGCCCATCGACGTCTACCTCCAGGATGCAACCCT
GACCGCCCTCAAGCACCAGTTCGGCTACCTGGTCGGGGCCACGCCCTGGG
CGGACAAAGCCCGGAGGATCCTCCAACGCAACGTCCCCGTCCTAGCCTGG
CACCCCCTCGCCACCGACGACGCCTCCTTCGAGCTGACACGCAGTCGAGT
CCCTGTGCGTGCTTTCCCCGTCTTCCACGGGGGAGAGTACGTGAGCCTCG
GCTTCGCCTTCGGGCAGCCGGGCGAGTTCGTCTATATTTCCGACGTGAAG
CGCATTCCCCCGCCTAGCATGGCCTTCCTCCAGTCCCTGCCCCCCATCCA
GACGCTGGTGGTGGACTGCATCAGCACGACCGAGACCTCCCACTACTCCC
ACTTCAACCTGGCGGAGGCCCTGGCCCTGGTCGACACTCTCCGGCCCCGA
CACACGTACCTGACAGGCATGTGCTGCGAGGTGGGCGCGCACGAGGAGGT
GGAGGAGAAGCTGCGGGGCATGGGGTATCCCCACGTGAGCCTGGCCTGGG
ACGGGATGGTCCTCGGGGGGCTCCGCGTGTGA
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Coding sequence (CDS) from alignment at CM002465.1:14732..16163-

>rna5065 ID=rna5065|Name=rna5065|organism=Nannochloropsis gaditana|type=CDS|length=1128bp|location=Sequence derived from alignment at CM002465.1:14732..16163- (Nannochloropsis gaditana)
ATGCAACAAGAGGATACAACAGCCCATACGAGCATATCCGTGGCCACGTC
AAAGAAGCCTGATGAGGGCCAACACATGATGCCGCCGGCTGCGCCCGTTG
AGGACTCGACTCTAAGGTTTAACACCTGCATAACAACACGAAGCAATGGA
AGTACAGCAAGCTCGATCTCTCAGAAAGGCACGCTGGATGTGATGTTCCT
CGGAACAGGAGTGAGCATCGCGGTGCCTAATATGGGCCACGTCCTGGAGG
GGCATTGCGCCACCTGCATGCGTGCCCACTCCAACCCCGCGAGCAAGGAC
CGGCGGAACAATGTCTCAATAGCCATTCTGGTCAATGGCACAGGTCAGGG
CCCAGCGGATAGCGACCGTGACTGCATTTTGGTGGATGCTGGTAAGACGA
TGCGGGACGCGATCTTGCGAAGATTCCCAGCGGCGGGCGTGAGGAGCGTG
CAGGCCCTCTTGCTCACGCACGACCACGCGGACGCCACATTCGGCCTGGA
CGACCTGCGAGACTTGCAAATGAAGGAGCACGAGGAAGGGGTGGGGATCC
ACCTGTTGGACGAGCCCATCGACGTCTACCTCCAGGATGCAACCCTGACC
GCCCTCAAGCACCAGTTCGGCTACCTGGTCGGGGCCACGCCCTGGGCGGA
CAAAGCCCGGAGGATCCTCCAACGCAACGTCCCCGTCCTAGCCTGGCACC
CCCTCGCCACCGACGACGCCTCCTTCGAGCTGACACGCAGTCGAGTCCCT
GTGCGTGCTTTCCCCGTCTTCCACGGGGGAGAGTACGTGAGCCTCGGCTT
CGCCTTCGGGCAGCCGGGCGAGTTCGTCTATATTTCCGACGTGAAGCGCA
TTCCCCCGCCTAGCATGGCCTTCCTCCAGTCCCTGCCCCCCATCCAGACG
CTGGTGGTGGACTGCATCAGCACGACCGAGACCTCCCACTACTCCCACTT
CAACCTGGCGGAGGCCCTGGCCCTGGTCGACACTCTCCGGCCCCGACACA
CGTACCTGACAGGCATGTGCTGCGAGGTGGGCGCGCACGAGGAGGTGGAG
GAGAAGCTGCGGGGCATGGGGTATCCCCACGTGAGCCTGGCCTGGGACGG
GATGGTCCTCGGGGGGCTCCGCGTGTGA
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Synonyms
Publications