rna506, rna506 (mRNA) Nannochloropsis gaditana

Overview
Namerna506
Unique Namerna506
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1948
Alignment locationCM002455.1:1272263..1273932 -

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Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100096g15.975.mrna
Orig protein idgnl|cribi|Naga_100096g15.975
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002455.1supercontigCM002455.1:1272263..1273932 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100096g15gene487Nannochloropsis gaditana (N. gaditana B-31)gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM30167.1cds506Nannochloropsis gaditana (N. gaditana B-31)CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna506rna506-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna506 ID=rna506|Name=rna506|organism=Nannochloropsis gaditana|type=mRNA|length=1948bp
AAATCAGGTGGGGAGGGGGCGTACAAGGACGTACCGAGGCAACTTTATCA
ACCACCTGAAAAAACAAGGGAAGGTACGAAGTCAGCACAATCCGCACACC
TCTCTGTATCACAGAGATAGTGAGTGACGGGATCAGACCGAGAATGGAGG
ATTGTCCTCCCAGTTAACGCGTGGATCTTGCTTTGTTTTTGCTGCCCCCC
AGGCGACAGGACGCAGTGTGAGCTCCATCGATGTTCCAACACGATCTGCA
GGAGCCCCTTTTTCTCGAATGGTATGGGACCAGGGCGGCACTCTTACGTT
CCTCGACTCACAACTTGATACTTCCAGACAGGTGCGGTGCTTGAGCTGAC
CCTCGGGAAATTTACGAGCATGGCAACCAGCTCGTCCCACACATCACAAG
ATAATAATGAAGACGACCAAGATAAAGCTAGTCAGGGTCAAGCGGCTTTA
CATGCTCGGACGTTTCTGACGCAGCTAGTGGACGCGGCGGCTAGCGACGA
TGCTGCGAAGCTGGATTCCTTACTTCAGGAAGAAAAGGACCGGCATCCCG
ACTTAGAGGACGACTCCGCTGCTATTTTGCGGCAATACAAGGATGGAAAT
GGTCGCACAGCGCTGCATTTTGCTTGTCATGCGGGTCAAGTGGAGATGGT
TCGACATATTTTGGACCTGGCGCCTGAGGGTGTAAGCTGGGAAGACGATA
AGGGTGACACACCTTTGATTCTAGCCGCCGCTGGCGGTGGCGATGGAAAT
ACAAGTCGAGTAAGTCGCAAAGATTTGCTTGAGGTCTTGCTGGATAGGGG
AGCAGACCCCAATCATGGCCCCGTGAAGGATGATGAACACGACGGTGCAC
GTGCCTTGCACCATGTTGCCGGGCACGACGACGTGGAGGCCGTTCGCACT
TTGCTTCGGCATGGCAGCGATGTCAACGCCGCTGCAGGCACCGGCACACC
GTTGCACTGGGCGAGTGCAGAAGGTGCGAAAGCGTCCTTGGAAGCCCTGA
TCGAGACGGGAGGCGATGTGGACGCAGTGAACGATCAGGGACTGTCTCCC
ATCATCCTCGCAGCCGCTCACGGCTGCGGCGGTTGCGTTGCGCTGCTTGC
CAAGGGTGGTGCCGATGTCGGATTTATTTTGTCGGGTGCGGGGTTGACGG
CGCTGCACATGATGGCAGAGTATGGATCCTTGGATGGCGTTCAGGCGATA
TTAGCCACGGGGGCACCCGGGGTGGCCTGTGCAGTGCAGGAGAGTGAAAA
TGGCAAGCCGATCCATCTAGCTGCATGGGCCGCACACAAAGACGTGGTGG
AGACCTTGCTCCCCTATTCGGACGTCAAGGAGACGGTTGAGGAACTCATG
AGCTGGGGGCGGGCGAGGGCAGCGGCCTACGAAGAGGAGAAAGGTAGGTC
TTCCGATCACACCATGCTACAACCCGAACAAGATTCCAGACACAGCAGTG
GAGTGCACTTACCCCCCCCCGCAGCCTCGGCGGCGGACGTGGAAACGGCG
TTGCGACTGAAAGAGACGGCGAACCGTCATTACGTTGCTGGCGAGTACGG
TCAAGCCCTTCCCTTGTATGACGAATCCATCGGGCTGAACGGGCGGGACT
CTGCCTTGTGGAGCAACCGTTCTGGGTGCCTGTTGAAGCTGGGACGTCCT
GAAGACGCATTGAGGGACGCAGAAACGGCCCGGGCACTGAAGCCCGGCTG
GCCAAAAGCCTGTTTTCGCATGGCGGAGGCACGCTTAGCACTGAAGAGGT
ACGAAGATGCGGCCTTGGCAGCCTATGAAGGTATCCAGCTGGACTCGGGG
AACCAGGCGCTGCACAACATACTGAAAACCGCGATAGAGCTCGGAAGGGC
GGAGCACCAGAAGAAAGTCAAAGAACGGGAAGGGAGATAATGGAACTTGG
AAAGCGGGGGATAAAACATCGAACACTCAAAACATTGTAACAAGCAGA
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protein sequence of rna506

>rna506-protein ID=rna506-protein|Name=rna506|organism=Nannochloropsis gaditana|type=polypeptide|length=282bp
MGAYISSSVQANSSRPQSSRPALSSSNNSGPAYRGGHLHSSHGRRPMRLS
RHNPWAFQTAVSEALKRRGYIDALWDALSNGDKSSHRAPVPCEVLPLILH
FAGSYKEMTLSKEEPVRISNGNFAYLTHPIPTNLHGHQVVGARISVTSHD
QGWSSEHPHLRGTYIGSYTWGEALVVESSSPTSTTEQGIPRVVVGTEVYR
NLHAVKIWQTHEKTFVGPLASPRGKGQVDEESKEEGVQSDGGDLISALRP
GRALALHLHAQYPGWTNFTQGAHITIQYLRVD
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mRNA from alignment at CM002455.1:1272263..1273932-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna506 ID=rna506|Name=rna506|organism=Nannochloropsis gaditana|type=mRNA|length=1670bp|location=Sequence derived from alignment at CM002455.1:1272263..1273932- (Nannochloropsis gaditana)
CACAAAATGTACCTCATCCCTCTACATGAAAAACATATTGTAGTATTCTC
CCCTCCGTGTCTTGCCATCACGCCCCGCACCCACGTAGCTTGGCCTCAGT
CGAGAATGAAGATAAGAGACGTTGATAACCTCCTCACCCCCTTTAGCAAA
GTGTCGAGCCAGACGGACGCACAAATCAAATTCCTGCTCAGCCCCCAACG
GCACCCGGCAACAAACGCTTCAGTGTGCTTCATTTGATGTGCAGATTTGG
TGAACATGGCTGGTCATATTCACCAACCTATGACATCGAGGATATGTGAC
GTTCAAGGCCGCGATTTAAAATTCCGTGCCGGCCATTGTAAATCAGGGAC
ATGTCATCTTGCCCGCAAACAGGATGTGAACAGCCTTACTTTTTAGTCGT
TGCACAGCTAAATAGACACCACCATGGTCACACCGGGGACGGACGTATGT
TCTGTACGGATCTCGTTCGCAAATTCTTCCTGTATAGGCAACTTCACTCA
TGCATTGTTCTATCCGCCTCAGTAGTGGCTTCACAGGTCTCACCAAGCAG
CCGTGTTCGTACACATGGGTGCCTATATCAGCTCCAGCGTCCAAGCAAAT
TCCTCACGCCCGCAATCCTCACGCCCTGCTTTATCATCGTCTAATAATTC
CGGCCCTGCATACCGTGGAGGGCATCTTCACTCGTCCCATGGCCGTCGAC
CTATGCGGCTGTCGCGGCACAACCCGTGGGCATTTCAAACAGCAGTCTCC
GAAGCTTTGAAACGCCGGGGCTACATTGACGCTTTGTGGGATGCTCTGTC
CAATGGCGACAAATCCTCTCACCGGGCGCCTGTGCCGTGTGAGGTACTTC
CCCTCATCTTGCATTTCGCTGGCTCGTACAAAGAAATGACGCTGAGCAAA
GAAGAACCCGTCCGGATCTCAAACGGAAATTTCGCGTACCTGACACACCC
TATCCCGACGAATCTCCACGGGCATCAGGTTGTGGGTGCCCGTATATCGG
TAACGTCCCATGATCAAGGATGGAGCAGTGAGCATCCGCACCTACGTGGC
ACGTACATTGGCAGTTACACATGGGGGGAAGCTTTGGTGGTGGAGTCGAG
CTCCCCGACGAGCACCACAGAGCAGGGGATCCCACGCGTGGTGGTGGGTA
CGGAGGTGTATCGGAATTTGCACGCCGTGAAGATATGGCAGACGCATGAG
AAGACCTTCGTCGGGCCCCTGGCCTCGCCGAGGGGCAAGGGGCAGGTCGA
CGAAGAATCCAAAGAGGAAGGAGTACAGTCGGATGGGGGCGATTTGATAT
CGGCCTTGCGGCCAGGGCGTGCCTTGGCGTTGCATTTACATGCTCAGTAT
CCTGGCTGGACCAATTTCACCCAGGGCGCGCACATCACCATCCAGTACCT
GCGTGTGGACTGAGAGATGAACGGGCGACGAGGGGAGGGAAGAGGGACGG
AAGGGGAGGTGTGCATGACGGGGAACTACAGTTGGAGGCCAAGAGAAAGT
AACGCTGTATTTTGTATGTACTGATATTCTGCTTGTTACAATGTTTTGAG
TGTTCGATGTTTTATCCCCCGCTTTCCAAGTTCCATTATCTCCCTTCCCG
TTCTTTGACTTTCTTCTGGTGCTCCGCCCTTCCGAGCTCTATCGCGGTTT
TCAGTATGTTGTGCAGCGCC
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Coding sequence (CDS) from alignment at CM002455.1:1272263..1273932-

>rna506 ID=rna506|Name=rna506|organism=Nannochloropsis gaditana|type=CDS|length=849bp|location=Sequence derived from alignment at CM002455.1:1272263..1273932- (Nannochloropsis gaditana)
ATGGGTGCCTATATCAGCTCCAGCGTCCAAGCAAATTCCTCACGCCCGCA
ATCCTCACGCCCTGCTTTATCATCGTCTAATAATTCCGGCCCTGCATACC
GTGGAGGGCATCTTCACTCGTCCCATGGCCGTCGACCTATGCGGCTGTCG
CGGCACAACCCGTGGGCATTTCAAACAGCAGTCTCCGAAGCTTTGAAACG
CCGGGGCTACATTGACGCTTTGTGGGATGCTCTGTCCAATGGCGACAAAT
CCTCTCACCGGGCGCCTGTGCCGTGTGAGGTACTTCCCCTCATCTTGCAT
TTCGCTGGCTCGTACAAAGAAATGACGCTGAGCAAAGAAGAACCCGTCCG
GATCTCAAACGGAAATTTCGCGTACCTGACACACCCTATCCCGACGAATC
TCCACGGGCATCAGGTTGTGGGTGCCCGTATATCGGTAACGTCCCATGAT
CAAGGATGGAGCAGTGAGCATCCGCACCTACGTGGCACGTACATTGGCAG
TTACACATGGGGGGAAGCTTTGGTGGTGGAGTCGAGCTCCCCGACGAGCA
CCACAGAGCAGGGGATCCCACGCGTGGTGGTGGGTACGGAGGTGTATCGG
AATTTGCACGCCGTGAAGATATGGCAGACGCATGAGAAGACCTTCGTCGG
GCCCCTGGCCTCGCCGAGGGGCAAGGGGCAGGTCGACGAAGAATCCAAAG
AGGAAGGAGTACAGTCGGATGGGGGCGATTTGATATCGGCCTTGCGGCCA
GGGCGTGCCTTGGCGTTGCATTTACATGCTCAGTATCCTGGCTGGACCAA
TTTCACCCAGGGCGCGCACATCACCATCCAGTACCTGCGTGTGGACTGA
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Synonyms
Publications