rna5052, rna5052 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna5052
Unique Name	rna5052
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	2574
Alignment location	CM002464.1:1057114..1059690 -

Link to JBrowse

Properties


Property Name	Value
Product	equilibrative nucleoside transporter 1
Orig transcript id	gnl\|cribi\|Naga_100037g17.10725.mrna
Orig protein id	gnl\|cribi\|Naga_100037g17.10725
Gene	S29A1
Gbkey	mRNA
Note	encoded by transcript variant 3; alternatively spliced

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002464.1	supercontig	CM002464.1:1057114..1059690 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
S29A1	gene4876	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM25636.1	cds5040	Nannochloropsis gaditana (N. gaditana B-31)	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna5052	rna5052-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002464.1:1057114..1059690-
coding sequence from alignment at CM002464.1:1057114..1059690-

mRNA sequence

>rna5052 ID=rna5052|Name=rna5052|organism=Nannochloropsis gaditana|type=mRNA|length=2574bp
GTGATATTATACTAACTCAGGAACTATTTTGTGAGCGGTAGTTTGATGCG
CACCGAAAACTTTCTGATGTCGCGAGTTGACAACAAGATGTTGCTCTCGC
GCTTCGGCGACAGACCCAGGTATAGAAGACTAGGCAAACTAATGTGCTAT
TTCTCAACTTTGCAGCACACACTGGCTCCGAATTCATCGCGGCATGATCA
ACAGGGTCGCGGGTGTGGACGACTTTGGCTTCTTCTACTCCTCACCGATA
TTATTGGAGGAGATTGATTTCTTGTAGCGTGGTTTCTAAGGGCCCTGCAG
GCGAATTACTATCCCCCGTCCGGACAGAACCCGGCCTGCCGTGTAGCCAG
CCTTACAAATACATGCAGGCGGCCCTTTTACAGGGCGAAAAGAAGCAAGA
AATGGTCCCATCTGATCGTTACAACGTAGCATATGTTATATTTTACCTGA
ATGGAATCGCTCAGCTATACCCTTGGAACGATCACGGCACCTAAAGACAT
CTCGGTACCCTCACGACAGCCTTCATTACCGCCGCGCCTTATTTTGCGCA
GCGTTTCTGTGGGACGAATAGGCAGCATGACTTTGAAAATTTCTTTTCTC
TCACGTTCATGGCAACCAACTTGCTGTTCCAAAGCTTGCTCGTGCGGTAT
GCCAAAACTGCCGGTAAGTGCAGCATCACCTTTCGGATCGTCCTGCCGCT
CGCTCTTCTACTCTCGATATTCGCTGCCACCGCGGTATTGGTTCTCGTCA
AAGATGCCTCCCGGGACGGAATGTTCAGCTTCACTGCCTTAAGCGTGGCA
CTCTGCGGCTTCTGCACCTCTGTCCTCCAGGCGGCGATCTTCGGCTATGC
GGCGGCCTTCCCCCCCCGATACACGCAAGCCATGATGGCGGGACAGGGGC
TCGCTGGCCTCATCGTGGCCGCAGCAGGCTTGGCCACAGCCGCGAGCAGC
CGAGCCAACGGTGCCTGCGCTGGTGTGCATCTGACGGAGGAGGGACCCGG
ACAAGGAGAGCAAATGGCGGCCTGCTCGGCTTACCAGGAGATCGACTACC
ACGCCTTGGCGTACTTCGGGACGGCCGTGGTCATATTGGGGGTCTGCATC
GTCTCCTTCCTTTACCTGGAGCGCTTGCCTTTGGCGCAGTTCTTTGTGGG
CTATAACAAGCGCCACGTCCACAGCCCCAGAGGAGCAGCGGGTGGAGGGT
CCAAAGCGACCTTGGGGCTTGGCGGCAACAGGAGTGGGAGCGGCAAAGGC
GATGACGCGTCAGTCGTGGAGAGCGGCCTCCGTGCCCTGCCGATGGCGGT
GCGTTCCGGAGCCGGAGGAGAGGGGGCTGCGGATAAGGAAGCGGTCGGTG
TCGATGGGGAACAAGGGGAGGAAGCCAGCGACGAGGAGAGCAGTGTTGGT
CTCGTGGGGGTGCTGCCCAACACGGACCCCTGCGCTCTCCTGTCCCGTGT
GGATTCGTCCTTGTCACTCTTGAGCGCCCATGGAGAGGACGAGCGAGGTG
ACGGCAATGAGGAGTCAGAGTCGTGGGGGAACACCACACTGCACGACATA
AAAAGCTCTGTGCGCACGCACCAGCACGTGTCATTTCTCGTTCTTCTTCG
CCGCCTTGGGTCTCCAGGCCTGGCAGTCTTCCTCGTTTTTTCCATCACCC
TGGCCCTCTTTCCATCCACCACGGTACACATCGTCTCTGTGCGACGCTGC
CAAGGCAGAGGGGTCTTTTATGACCAAGCTTTCGTCCCCTTCCAGTTCCT
TCTCTTCAATCTGGGCGACTGGGGAGGTCGCACCCTCGCCGGCCACCTCC
CCTCGCCCTTTCTTGTGCCCGCTCACCGATTGAGCTTCTATGCAGCGGCC
AGGGTAGTATTCTTGCCGCTTTTCTTGCTCTGCAACGTAGACGACTCAGC
ATTTCCTATAGTCTTTGCGGCGGACTGGTGGCCAATGCTCTTCATGCTTT
TCTTTTCCCTCAGCAACGGCTATCTCTCATCTTTAGCTATGATGCGAGGG
CCTGCACAGCTGACCGTAGATCAGGCAGAGCGAGGTGGGAACGTGATGGT
TCTGTTGATGACGGCTGGTCTGAGCGCGGGGTCTGTGCTCTCTTTTCTTG
TTTCGGCTGTAAGCCTTAACAAGTTCTAAATTTCGGGGTACATATATTGT
CGAAAGACTCTGTAGATATGAAAAATCCAACTCATGACGAATATAATGCC
CAATGAAATTTTACAAACGCTTTTGTAGACGGTGTTAAGGTGGAAATGCA
CAGCAGTTGTAGGAATTGTCAATTTCTACCTGGTTTCCATCGTTTTATTG
GTACGTCTGTCCACCACTTTGCGGGGCAAGTTCACCACGCAAACCAATCA
TATTTTGTTGATGAATATGATTGATGGCAAACTGGCCCGCAATATAGCCA
CATGTCGGGGACGTACCACTTCCATGGTCCTTTTTGCGGACGCACGGTGG
CTGAACCTCCTCTATCCAACAACTTTCTTGAACGAGCACCTAAAATCATA
CTCTGTAGTAACGATTTACAGGATGAAAACAACTAGAGTCCTGTATTTCT
ATACTTTTATTGCCATACAACCTG

protein sequence of rna5052

>rna5052-protein ID=rna5052-protein|Name=rna5052|organism=Nannochloropsis gaditana|type=polypeptide|length=506bp
MATNLLFQSLLVRYAKTAGKCSITFRIVLPLALLLSIFAATAVLVLVKDA
SRDGMFSFTALSVALCGFCTSVLQAAIFGYAAAFPPRYTQAMMAGQGLAG
LIVAAAGLATAASSRANGACAGVHLTEEGPGQGEQMAACSAYQEIDYHAL
AYFGTAVVILGVCIVSFLYLERLPLAQFFVGYNKRHVHSPRGAAGGGSKA
TLGLGGNRSGSGKGDDASVVESGLRALPMAVRSGAGGEGAADKEAVGVDG
EQGEEASDEESSVGLVGVLPNTDPCALLSRVDSSLSLLSAHGEDERGDGN
EESESWGNTTLHDIKSSVRTHQHVSFLVLLRRLGSPGLAVFLVFSITLAL
FPSTTVHIVSVRRCQGRGVFYDQAFVPFQFLLFNLGDWGGRTLAGHLPSP
FLVPAHRLSFYAAARVVFLPLFLLCNVDDSAFPIVFAADWWPMLFMLFFS
LSNGYLSSLAMMRGPAQLTVDQAERGGNVMVLLMTAGLSAGSVLSFLVSA
VSLNKF

mRNA from alignment at CM002464.1:1057114..1059690-

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna5052 ID=rna5052|Name=rna5052|organism=Nannochloropsis gaditana|type=mRNA|length=2577bp|location=Sequence derived from alignment at CM002464.1:1057114..1059690- (Nannochloropsis gaditana)
GGCATGGACAGGTCTAGTATACTAGAAGAAATGTGCCCGTTGGGTTTTAG
AACCCAGGGTTGGAACCATAGCTCCTGGAAAATCATCCATGTCGTGCCAT
CAATCGACACATTTTTTCTTTTCCGGAATGCATGACGGTCATCACTGTGC
CCAGAGGAGTTCTCCTGAAATTCAATCTTAACCTCACTCAATTTTCGCCA
CTAGTTATATTTTACCTGAATGGAATCGCTCAGCTATACCCTTGGAACGG
TACGTATCAGACTTTCAAGAGTATTGATCGAAATTTACTGGGGTGTTTGA
ATTGCTTCATAATTTCCATCAAATCTCTAGATCACGGCACCTAAAGACAT
CTCGGTACCCTCACGACAGCCTTCATTACCGCCGCGCCTTATTTTGCGCA
GCGTTTCTGTGGGACGAATAGGCAGCATGACTTTGAAAATTGTGCGTCTT
AGTAGCATGCTAGTTCTCATTACAATAATGTTGCTTTTTTTATTTGTCCC
AATTTGCGTAAGTGCTCACCATGGATAATGGCCTGTCGTGCCCTCGCGCT
CGCGCTCACGTCCCCTCCTGTCTGTCTATCTTCTTCGCGGGCAGTCTTTT
CTCTCACGTTCATGGCAACCAACTTGCTGTTCCAAAGCTTGCTCGTGCGG
TATGCCAAAACTGCCGGTAAGTGCAGCATCACCTTTCGGATCGTCCTGCC
GCTCGCTCTTCTACTCTCGATATTCGCTGCCACCGCGGTATTGGTTCTCG
TCAAAGATGCCTCCCGGGACGGAATGTTCAGCTTCACTGCCTTAAGCGTG
GCACTCTGCGGCTTCTGCACCTCTGTCCTCCAGGCGGCGATCTTCGGCTA
TGCGGCGGCCTTCCCCCCCCGATACACGCAAGCCATGATGGCGGGACAGG
GGCTCGCTGGCCTCATCGTGGCCGCAGCAGGCTTGGCCACAGCCGCGAGC
AGCCGAGCCAACGGTGCCTGCGCTGGTGTGCATCTGACGGAGGAGGGACC
CGGACAAGGAGAGCAAATGGCGGCCTGCTCGGCTTACCAGGAGATCGACT
ACCACGCCTTGGCGTACTTCGGGACGGCCGTGGTCATATTGGGGGTCTGC
ATCGTCTCCTTCCTTTACCTGGAGCGCTTGCCTTTGGCGCAGTTCTTTGT
GGGCTATAACAAGCGCCACGTCCACAGCCCCAGAGGAGCAGCGGGTGGAG
GGTCCAAAGCGACCTTGGGGCTTGGCGGCAACAGGAGTGGGAGCGGCAAA
GGCGATGACGCGTCAGTCGTGGAGAGCGGCCTCCGTGCCCTGCCGATGGC
GGTGCGTTCCGGAGCCGGAGGAGAGGGGGCTGCGGATAAGGAAGCGGTCG
GTGTCGATGGGGAACAAGGGGAGGAAGCCAGCGACGAGGAGAGCAGTGTT
GGTCTCGTGGGGGTGCTGCCCAACACGGACCCCTGCGCTCTCCTGTCCCG
TGTGGATTCGTCCTTGTCACTCTTGAGCGCCCATGGAGAGGACGAGCGAG
GTGACGGCAATGAGGAGTCAGAGTCGTGGGGGAACACCACACTGCACGAC
ATAAAAAGCTCTGTGCGCACGCACCAGCACGTGTCATTTCTCGTTCTTCT
TCGCCGCCTTGGGTCTCCAGGCCTGGCAGTCTTCCTCGTTTTTTCCATCA
CCCTGGCCCTCTTTCCATCCACCACGGTACACATCGTCTCTGTGCGACGC
TGCCAAGGCAGAGGGGTCTTTTATGACCAAGCTTTCGTCCCCTTCCAGTT
CCTTCTCTTCAATCTGGGCGACTGGGGAGGTCGCACCCTCGCCGGCCACC
TCCCCTCGCCCTTTCTTGTGCCCGCTCACCGATTGAGCTTCTATGCAGCG
GCCAGGGTAGTATTCTTGCCGCTTTTCTTGCTCTGCAACGTAGACGACTC
AGCATTTCCTATAGTCTTTGCGGCGGACTGGTGGCCAATGCTCTTCATGC
TTTTCTTTTCCCTCAGCAACGGCTATCTCTCATCTTTAGCTATGATGCGA
GGGCCTGCACAGCTGACCGTAGATCAGGCAGAGCGAGGTGGGAACGTGAT
GGTTCTGTTGATGACGGCTGGTCTGAGCGCGGGGTCTGTGCTCTCTTTTC
TTGTTTCGGCTGTAAGCCTTAACAAGTTCTAAATTTCGGGGTACATATAT
TGTCGAAAGACTCTGTAGATATGAAAAATCCAACTCATGACGAATATAAT
GCCCAATGAAATTTTACAAACGCTTTTGTAGACGGTGTTAAGGTGGAAAT
GCACAGCAGTTGTAGGAATTGTCAATTTCTACCTGGTTTCCATCGTTTTA
TTGGTACGTCTGTCCACCACTTTGCGGGGCAAGTTCACCACGCAAACCAA
TCATATTTTGTTGATGAATATGATTGATGGCAAACTGGCCCGCAATATAG
CCACATGTCGGGGACGTACCACTTCCATGGTCCTTTTTGCGGACGCACGG
TGGCTGAACCTCCTCTATCCAACAACTTTCTTGAACGAGCACCTAAAATC
ATACTCTGTAGTAACGATTTACAGGATGAAAACAACTAGAGTCCTGTATT
TCTATACTTTTATTGCCATACAACCTG

Coding sequence (CDS) from alignment at CM002464.1:1057114..1059690-

>rna5052 ID=rna5052|Name=rna5052|organism=Nannochloropsis gaditana|type=CDS|length=1521bp|location=Sequence derived from alignment at CM002464.1:1057114..1059690- (Nannochloropsis gaditana)
ATGGCAACCAACTTGCTGTTCCAAAGCTTGCTCGTGCGGTATGCCAAAAC
TGCCGGTAAGTGCAGCATCACCTTTCGGATCGTCCTGCCGCTCGCTCTTC
TACTCTCGATATTCGCTGCCACCGCGGTATTGGTTCTCGTCAAAGATGCC
TCCCGGGACGGAATGTTCAGCTTCACTGCCTTAAGCGTGGCACTCTGCGG
CTTCTGCACCTCTGTCCTCCAGGCGGCGATCTTCGGCTATGCGGCGGCCT
TCCCCCCCCGATACACGCAAGCCATGATGGCGGGACAGGGGCTCGCTGGC
CTCATCGTGGCCGCAGCAGGCTTGGCCACAGCCGCGAGCAGCCGAGCCAA
CGGTGCCTGCGCTGGTGTGCATCTGACGGAGGAGGGACCCGGACAAGGAG
AGCAAATGGCGGCCTGCTCGGCTTACCAGGAGATCGACTACCACGCCTTG
GCGTACTTCGGGACGGCCGTGGTCATATTGGGGGTCTGCATCGTCTCCTT
CCTTTACCTGGAGCGCTTGCCTTTGGCGCAGTTCTTTGTGGGCTATAACA
AGCGCCACGTCCACAGCCCCAGAGGAGCAGCGGGTGGAGGGTCCAAAGCG
ACCTTGGGGCTTGGCGGCAACAGGAGTGGGAGCGGCAAAGGCGATGACGC
GTCAGTCGTGGAGAGCGGCCTCCGTGCCCTGCCGATGGCGGTGCGTTCCG
GAGCCGGAGGAGAGGGGGCTGCGGATAAGGAAGCGGTCGGTGTCGATGGG
GAACAAGGGGAGGAAGCCAGCGACGAGGAGAGCAGTGTTGGTCTCGTGGG
GGTGCTGCCCAACACGGACCCCTGCGCTCTCCTGTCCCGTGTGGATTCGT
CCTTGTCACTCTTGAGCGCCCATGGAGAGGACGAGCGAGGTGACGGCAAT
GAGGAGTCAGAGTCGTGGGGGAACACCACACTGCACGACATAAAAAGCTC
TGTGCGCACGCACCAGCACGTGTCATTTCTCGTTCTTCTTCGCCGCCTTG
GGTCTCCAGGCCTGGCAGTCTTCCTCGTTTTTTCCATCACCCTGGCCCTC
TTTCCATCCACCACGGTACACATCGTCTCTGTGCGACGCTGCCAAGGCAG
AGGGGTCTTTTATGACCAAGCTTTCGTCCCCTTCCAGTTCCTTCTCTTCA
ATCTGGGCGACTGGGGAGGTCGCACCCTCGCCGGCCACCTCCCCTCGCCC
TTTCTTGTGCCCGCTCACCGATTGAGCTTCTATGCAGCGGCCAGGGTAGT
ATTCTTGCCGCTTTTCTTGCTCTGCAACGTAGACGACTCAGCATTTCCTA
TAGTCTTTGCGGCGGACTGGTGGCCAATGCTCTTCATGCTTTTCTTTTCC
CTCAGCAACGGCTATCTCTCATCTTTAGCTATGATGCGAGGGCCTGCACA
GCTGACCGTAGATCAGGCAGAGCGAGGTGGGAACGTGATGGTTCTGTTGA
TGACGGCTGGTCTGAGCGCGGGGTCTGTGCTCTCTTTTCTTGTTTCGGCT
GTAAGCCTTAACAAGTTCTAA

Synonyms

Publications