rna5033, rna5033 (mRNA) Nannochloropsis gaditana

Overview
Namerna5033
Unique Namerna5033
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1858
Alignment locationCM002464.1:969339..970612 +

Link to JBrowse

Properties
Property NameValue
Productf-box-like wd repeat-containing protein tbl1xr1
Orig transcript idgnl|cribi|Naga_100500g1.3106.mrna
Orig protein idgnl|cribi|Naga_100500g1.3106
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002464.1supercontigCM002464.1:969339..970612 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100500g1gene4860Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna5033rna5033-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM25654.1cds5021Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna5033 ID=rna5033|Name=rna5033|organism=Nannochloropsis gaditana|type=mRNA|length=1858bp
GCGGTCTGAAAAATTAAGTTCATATGACGCCTGAACGTGTTAAGCTCTCG
ACTGGCCCCGCGTTTCCAGGAACTGAATCGCGACGCTAATGCTACATATC
CCACCTAGAAACGCAGGCTTGTGGTTTGATTTATTTACAACGCCGGCTTC
GTCTCTCTCAGCCGTCGCCACGGAGAGTCAACCTCCCTCCTTGCCCCTGC
CCGCTGACACTCAAACCACTGTGCTGGACTCTGCCATGGCCAGTCAACAA
CGTGCTCTCCTCCAAGGAGATCGTCTGGCGAAAGAGCTTGCGGCACAGCA
AGCAAGGGCGGCTGCCAGGGCGTACGTGACCGATAAAGGTAGGCGCCTCT
GGAATATTGGGATTTTATGTAACATAGTACGTGCCTCCCTCCCTTATCCA
CACGTTAAACGCGCAGCAACGTGTTCCGCATGGAGTTAGTACCTATACCA
CTTGATTTCTTTGCCCCAGTCTCCTTTTCAAAACCTGCTCGGCAGAGGAG
ACCTTGAAAAAGTCTGATCTTCCTCACTCCCCATGTATAATTCGTCCTTT
GCTTCAAAAGGGTGCATGAACGTCTCTGTCACTGAGAGGGTCCTCAATAG
AGGCACCTACTCCGGCGCTGAGGCGGAAGAATTGGCCATCGCTGCCGGAG
GGGGCCTGTCAGTGCACAAGGACAACACACTCGAAATCCTTCGGGAGCGA
GAGCTTGGGAGGCAGAGGCAAGCAAAAGACGCGCAGAAGGAGGCAAATTT
AAAAGCAAAACTTCTCCAGCAACAAGAGAATTTTCGAAAAGAAAAAGCGA
CGGGCAAGGGGGACTTGGAAGGCCAAGGGAGCGTGGAGAGAGACTCGACT
CCCCTCCCCGCAGGGTGGGAAGCCGTCATGGACCCTCAGGGCTCCGGCGA
CTACTATTACTGGCACGCGGGTACGAATGTGACCACGTGGGAACGCCCTT
CCTCCCAAATTCCGACGGCTGTACCGTCAGGGGACACGGGTGTTACGACT
CTGAAAAACCACACTTCGGGTAGCTTTCTTTCCTCGGAAACTTCAGGAGG
CGGGGAACCAGGACACGGGAGAGAACCGACCGGGCGGGGAGGCACCGAAC
TTCCCCGGGCAAATGACCTTGGGAGCTTGCCAGAGGGGTGGAAGGAGGTC
AAGCACGCAGCGACGGGACAGATCTGTTATGTCCACGCGGCTAGCGGGGT
GAAACGCTGGTCCCGTCCAACAATTGCAGGCGACGTGACGTCTGACATAC
AGCAAACTCGACAAACCCATCTGGAAGCCGCTCGGCAGGCAGAGCTGGCG
CAAACGGGGGCAAAGGGAGGAAAAGATGGGGGAGGGAAGAAGAGGGGACG
GGAGGAAATCGACCCGTTGGATCCCACTGGAGGGAGAGGAAGTGGCGGGT
GGACCCAAGGATTGGGCGGTGGGGATAGAATGGCCGATAGCACCGCTGGC
GGCAGTCTATGGCAACAACGACCTTTGCCAGCACCAGGAGCAGTGTTGAA
AAAGCAAGGAGGCGGTAGGGGGGCAGGACGAGGAAACCAGGGCCAATATC
CCATGCGGCGGTGAGAAAAGCGCATGGTGAGGACTGAAAATCTGTTCACA
CATCCGAGGGGCTAGTAAGATGAAGAGGGAAGGATTATCTGTGCGTCAGA
ATGATTTGAAGGCAGTGTATGATGAGAAAAAATGGCACGAATAACAATTT
TGGTAGGGTAAAAGGAAAAGTTGAACCGCATAATTTTCATATGCCTCAGC
ACATTGTTTGATAACTTTTCGCAGACACCTCTTTGCGATGGTACCTGTGT
CGAAACTGCTATCGCGGTTCCAACAACTATAGAGGAAGAGTCTGTGGATG
GAAATATC
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protein sequence of rna5033

>rna5033-protein ID=rna5033-protein|Name=rna5033|organism=Nannochloropsis gaditana|type=polypeptide|length=120bp
MSFNTDEVNILVHRYLVESGYSHSAFTFFNEGGLDKTNLRAADVPPGALI
AYLQKGLEYVSIEEHINEDGSLKQCEEPFTLITPHICSNLRKTEGRLRKA
YSSFPPSFPLSLPFSFPPLP
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mRNA from alignment at CM002464.1:969339..970612+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna5033 ID=rna5033|Name=rna5033|organism=Nannochloropsis gaditana|type=mRNA|length=1274bp|location=Sequence derived from alignment at CM002464.1:969339..970612+ (Nannochloropsis gaditana)
ATCGTCATCATCACATTTGGTTCGTTTTCACTTACCGCTCTGTCACAGGT
ACACAAAGCCTGCCAACTGGCATACGAGGAAAACCCGTTCGCAGTGGCTG
CAGTCAAAGGACTGTACACCGGCGTAGGTGGGGTGTGGCCGTTATCAAGC
GTGTTGTCATACAAGACCTGTCCTTTAGGCGTGAGGTAGCCGCCTTCGTG
GCCCTCTCCTGtgcatccttcctccctttcccctcgctgCTTAATCTCCG
TGGAACCCCAGGCAAGCATGTCTTTCAACACAGACGAGGTGAACATCCTC
GTGCATCGGTACCTGGTAGAAAGCGGGTACAGCCATTCAGGTATTTCAGG
GCGGACGGCTACGACGCCAAGAGGAGAGGCGTGTTGGCGGTAACAGCACG
TATGCTGATGCCAATGCCTTTCGGGGGCACATGTTTCATCCATATTCTTC
TTGCTCACATTGACTGTACTAGATGTTCACCTCTTGTCGGTTGTGGACCA
TGGTCATAAAGTCGGGGCTTGTGGGGCATAATCTCAgcatggaaaaaaaa
aggcgaGCACATTGCACGCTTCTCATACCCTGATCTCCAATCATGCCCAC
CCCAGCCTTCACCTTCTTCAACGAAGGCGGCCTAGACAAGACGAACCTGC
GCGCGGCAGACGTGCCTCCCGGGGCTTTGATCGCTTATTTGCAGAAAGGT
CTGGAGTACGTCAGTATTGAGGAGCATATCAACGAGGTGCGTGCTGCTCC
CACAGGGACGTTGATGGGCACGGAAGGACGTGGTCAATTGCTTCAATGCG
TGCCTTGTCAAATGAGAGGTTCCCATCTAGGATTTATGCTGCCTGATGGC
AGGCATATCGAGTGCTGACTGCCCGACGTGGCTCTGAGCTGCCTCTCGTC
TATCGGCCAATGCGGGCACCCCATCGCGTACtcgccgtccttgtcctcgt
tcccAACACGCatctcgcccccccccccccggcttcCAGGATGGGAGTCT
GAAGCAGTGCGAGGAGCCCTTTACGCTCATCACCCCCCACATCTGCTCCA
ACctgaggaagacggaggggcggCTAAGAAAAGGTagagggacaaggaag
cgaagagggagggaagggagaggcagaagaaggccatggggagggagaaa
aatagCCCCGTTTGACATGCAGGGCAGGGCATTGGTGGGACATCCGCAAA
CCTTCACAGCGTattcgtccttccctccctccttccctctttccctccct
ttctcctttcctcccctcccataa
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Coding sequence (CDS) from alignment at CM002464.1:969339..970612+

>rna5033 ID=rna5033|Name=rna5033|organism=Nannochloropsis gaditana|type=CDS|length=1452bp|location=Sequence derived from alignment at CM002464.1:969339..970612+ (Nannochloropsis gaditana)
ATGTCTTTCAACACAGACGAGGTGAACATCCTCGTGCATCGGTACCTGGT
AGAAAGCGGGTACAGCCATTCAGCCTTCACCTTCTTCAACGAAGGCGGCC
TAGACAAGACGAACCTGCGCGCGGCAGACGTGCCTCCCGGGGCTTTGATC
GCTTATTTGCAGAAAGGTCTGGAGTACGTCAGTATTGAGGAGCATATCAA
CGAGGATGGGAGTCTGAAGCAGTGCGAGGAGCCCTTTACGCTCATCACCC
CCCACATCTGCTCCAACctgaggaagacggaggggcggCTAAGAAAAGCG
Tattcgtccttccctccctccttccctctttccctccctttctcctttcc
tcccctcccataaATGTCTTTCAACACAGACGAGGTGAACATCCTCGTGC
ATCGGTACCTGGTAGAAAGCGGGTACAGCCATTCAGCCTTCACCTTCTTC
AACGAAGGCGGCCTAGACAAGACGAACCTGCGCGCGGCAGACGTGCCTCC
CGGGGCTTTGATCGCTTATTTGCAGAAAGGTCTGGAGTACGTCAGTATTG
AGGAGCATATCAACGAGGATGGGAGTCTGAAGCAGTGCGAGGAGCCCTTT
ACGCTCATCACCCCCCACATCTGCTCCAACctgaggaagacggaggggcg
gCTAAGAAAAGCGTattcgtccttccctccctccttccctctttccctcc
ctttctcctttcctcccctcccataaATGTCTTTCAACACAGACGAGGTG
AACATCCTCGTGCATCGGTACCTGGTAGAAAGCGGGTACAGCCATTCAGC
CTTCACCTTCTTCAACGAAGGCGGCCTAGACAAGACGAACCTGCGCGCGG
CAGACGTGCCTCCCGGGGCTTTGATCGCTTATTTGCAGAAAGGTCTGGAG
TACGTCAGTATTGAGGAGCATATCAACGAGGATGGGAGTCTGAAGCAGTG
CGAGGAGCCCTTTACGCTCATCACCCCCCACATCTGCTCCAACctgagga
agacggaggggcggCTAAGAAAAGCGTattcgtccttccctccctccttc
cctctttccctccctttctcctttcctcccctcccataaATGTCTTTCAA
CACAGACGAGGTGAACATCCTCGTGCATCGGTACCTGGTAGAAAGCGGGT
ACAGCCATTCAGCCTTCACCTTCTTCAACGAAGGCGGCCTAGACAAGACG
AACCTGCGCGCGGCAGACGTGCCTCCCGGGGCTTTGATCGCTTATTTGCA
GAAAGGTCTGGAGTACGTCAGTATTGAGGAGCATATCAACGAGGATGGGA
GTCTGAAGCAGTGCGAGGAGCCCTTTACGCTCATCACCCCCCACATCTGC
TCCAACctgaggaagacggaggggcggCTAAGAAAAGCGTattcgtcctt
ccctccctccttccctctttccctccctttctcctttcctcccctcccat
aa
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Synonyms
Publications