EWM25654.1, cds5021 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM25654.1 vs. NCBI_GenBank
Match: gi|585107483|gb|EWM25654.1| (f-box-like wd repeat-containing protein tbl1xr1 [Nannochloropsis gaditana]) HSP 1 Score: 247.284 bits (630), Expect = 4.977e-83 Identity = 120/120 (100.00%), Postives = 120/120 (100.00%), Query Frame = 0
Query: 1 MSFNTDEVNILVHRYLVESGYSHSAFTFFNEGGLDKTNLRAADVPPGALIAYLQKGLEYVSIEEHINEDGSLKQCEEPFTLITPHICSNLRKTEGRLRKAYSSFPPSFPLSLPFSFPPLP 120
MSFNTDEVNILVHRYLVESGYSHSAFTFFNEGGLDKTNLRAADVPPGALIAYLQKGLEYVSIEEHINEDGSLKQCEEPFTLITPHICSNLRKTEGRLRKAYSSFPPSFPLSLPFSFPPLP
Sbjct: 1 MSFNTDEVNILVHRYLVESGYSHSAFTFFNEGGLDKTNLRAADVPPGALIAYLQKGLEYVSIEEHINEDGSLKQCEEPFTLITPHICSNLRKTEGRLRKAYSSFPPSFPLSLPFSFPPLP 120
BLAST of EWM25654.1 vs. NCBI_GenBank
Match: gi|698802404|ref|XP_009834231.1| (hypothetical protein, variant 2 [Aphanomyces astaci] >gi|574110609|gb|ETV76107.1| hypothetical protein, variant 2 [Aphanomyces astaci]) HSP 1 Score: 115.546 bits (288), Expect = 3.344e-28 Identity = 50/87 (57.47%), Postives = 68/87 (78.16%), Query Frame = 0
Query: 1 MSFNTDEVNILVHRYLVESGYSHSAFTFFNEGGLDKTNLRAADVPPGALIAYLQKGLEYVSIEEHINEDGSLKQCEEPFTLITPHIC 87
M+ +DEVN LV+RYL ESG+SH+AFTF E L K+++ + +VPPGALI+++QKGL YV IE H+NEDG+ ++CE TL+ PHIC
Sbjct: 1 MAITSDEVNFLVYRYLQESGFSHAAFTFAYESQLAKSSVISTEVPPGALISFIQKGLLYVGIEAHVNEDGTERECEADITLLNPHIC 87
BLAST of EWM25654.1 vs. NCBI_GenBank
Match: gi|698802406|ref|XP_009834232.1| (hypothetical protein, variant 1 [Aphanomyces astaci] >gi|574110608|gb|ETV76106.1| hypothetical protein, variant 1 [Aphanomyces astaci]) HSP 1 Score: 116.316 bits (290), Expect = 5.121e-28 Identity = 50/87 (57.47%), Postives = 68/87 (78.16%), Query Frame = 0
Query: 1 MSFNTDEVNILVHRYLVESGYSHSAFTFFNEGGLDKTNLRAADVPPGALIAYLQKGLEYVSIEEHINEDGSLKQCEEPFTLITPHIC 87
M+ +DEVN LV+RYL ESG+SH+AFTF E L K+++ + +VPPGALI+++QKGL YV IE H+NEDG+ ++CE TL+ PHIC
Sbjct: 1 MAITSDEVNFLVYRYLQESGFSHAAFTFAYESQLAKSSVISTEVPPGALISFIQKGLLYVGIEAHVNEDGTERECEADITLLNPHIC 87
BLAST of EWM25654.1 vs. NCBI_GenBank
Match: gi|673044039|ref|XP_008875980.1| (hypothetical protein H310_11180 [Aphanomyces invadans] >gi|574468260|gb|ETV95279.1| hypothetical protein H310_11180 [Aphanomyces invadans]) HSP 1 Score: 115.931 bits (289), Expect = 5.503e-28 Identity = 50/87 (57.47%), Postives = 68/87 (78.16%), Query Frame = 0
Query: 1 MSFNTDEVNILVHRYLVESGYSHSAFTFFNEGGLDKTNLRAADVPPGALIAYLQKGLEYVSIEEHINEDGSLKQCEEPFTLITPHIC 87
M+ +DEVN LV+RYL ESG+SH+AFTF E L K+++ + +VPPGALI+++QKGL YV IE H+NEDG+ ++CE TL+ PHIC
Sbjct: 1 MAITSDEVNFLVYRYLQESGFSHAAFTFAYESQLAKSSVISTEVPPGALISFIQKGLLYVGIEAHVNEDGTERECEADITLLNPHIC 87
BLAST of EWM25654.1 vs. NCBI_GenBank
Match: gi|698802402|ref|XP_009834230.1| (hypothetical protein H257_09641 [Aphanomyces astaci] >gi|574110607|gb|ETV76105.1| hypothetical protein H257_09641 [Aphanomyces astaci]) HSP 1 Score: 115.546 bits (288), Expect = 1.012e-27 Identity = 50/87 (57.47%), Postives = 68/87 (78.16%), Query Frame = 0
Query: 1 MSFNTDEVNILVHRYLVESGYSHSAFTFFNEGGLDKTNLRAADVPPGALIAYLQKGLEYVSIEEHINEDGSLKQCEEPFTLITPHIC 87
M+ +DEVN LV+RYL ESG+SH+AFTF E L K+++ + +VPPGALI+++QKGL YV IE H+NEDG+ ++CE TL+ PHIC
Sbjct: 1 MAITSDEVNFLVYRYLQESGFSHAAFTFAYESQLAKSSVISTEVPPGALISFIQKGLLYVGIEAHVNEDGTERECEADITLLNPHIC 87
BLAST of EWM25654.1 vs. NCBI_GenBank
Match: gi|567962083|gb|ETK87614.1| (hypothetical protein, variant 1 [Phytophthora parasitica] >gi|568020054|gb|ETL94192.1| hypothetical protein, variant 1 [Phytophthora parasitica] >gi|570328446|gb|ETO76394.1| hypothetical protein, variant 1 [Phytophthora parasitica P1976]) HSP 1 Score: 115.161 bits (287), Expect = 1.047e-27 Identity = 48/87 (55.17%), Postives = 69/87 (79.31%), Query Frame = 0
Query: 1 MSFNTDEVNILVHRYLVESGYSHSAFTFFNEGGLDKTNLRAADVPPGALIAYLQKGLEYVSIEEHINEDGSLKQCEEPFTLITPHIC 87
M+ +DEVN LV+RYL ESG+ HSAFTF E L K+++ ++PPGAL++++QKGL+YV IE HINEDG+ ++C+ F+L++PHIC
Sbjct: 1 MTITSDEVNFLVYRYLQESGFLHSAFTFAYESQLAKSSVINTELPPGALVSFMQKGLQYVGIEAHINEDGTERECDGDFSLLSPHIC 87
BLAST of EWM25654.1 vs. NCBI_GenBank
Match: gi|566024768|gb|ETI47679.1| (hypothetical protein, variant 1 [Phytophthora parasitica P1569] >gi|567990790|gb|ETL41012.1| hypothetical protein, variant 1 [Phytophthora parasitica] >gi|568050481|gb|ETM47420.1| hypothetical protein, variant 1 [Phytophthora parasitica] >gi|570952225|gb|ETP17482.1| hypothetical protein, variant 1 [Phytophthora parasitica CJ01A1] >gi|570986516|gb|ETP45514.1| hypothetical protein, variant 1 [Phytophthora parasitica P10297]) HSP 1 Score: 115.161 bits (287), Expect = 1.047e-27 Identity = 48/87 (55.17%), Postives = 69/87 (79.31%), Query Frame = 0
Query: 1 MSFNTDEVNILVHRYLVESGYSHSAFTFFNEGGLDKTNLRAADVPPGALIAYLQKGLEYVSIEEHINEDGSLKQCEEPFTLITPHIC 87
M+ +DEVN LV+RYL ESG+ HSAFTF E L K+++ ++PPGAL++++QKGL+YV IE HINEDG+ ++C+ F+L++PHIC
Sbjct: 1 MTITSDEVNFLVYRYLQESGFLHSAFTFAYESQLAKSSVINTELPPGALVSFMQKGLQYVGIEAHINEDGTERECDGDFSLLSPHIC 87
BLAST of EWM25654.1 vs. NCBI_GenBank
Match: gi|567962082|gb|ETK87613.1| (hypothetical protein L915_07972 [Phytophthora parasitica] >gi|568020053|gb|ETL94191.1| hypothetical protein L917_07792 [Phytophthora parasitica] >gi|570328445|gb|ETO76393.1| hypothetical protein F444_08199 [Phytophthora parasitica P1976]) HSP 1 Score: 115.161 bits (287), Expect = 1.068e-27 Identity = 48/87 (55.17%), Postives = 69/87 (79.31%), Query Frame = 0
Query: 1 MSFNTDEVNILVHRYLVESGYSHSAFTFFNEGGLDKTNLRAADVPPGALIAYLQKGLEYVSIEEHINEDGSLKQCEEPFTLITPHIC 87
M+ +DEVN LV+RYL ESG+ HSAFTF E L K+++ ++PPGAL++++QKGL+YV IE HINEDG+ ++C+ F+L++PHIC
Sbjct: 1 MTITSDEVNFLVYRYLQESGFLHSAFTFAYESQLAKSSVINTELPPGALVSFMQKGLQYVGIEAHINEDGTERECDGDFSLLSPHIC 87
BLAST of EWM25654.1 vs. NCBI_GenBank
Match: gi|566024767|gb|ETI47678.1| (hypothetical protein F443_08145 [Phytophthora parasitica P1569] >gi|567990789|gb|ETL41011.1| hypothetical protein L916_07896 [Phytophthora parasitica] >gi|568050480|gb|ETM47419.1| hypothetical protein L914_07860 [Phytophthora parasitica] >gi|570952224|gb|ETP17481.1| hypothetical protein F441_08119 [Phytophthora parasitica CJ01A1] >gi|570986515|gb|ETP45513.1| hypothetical protein F442_08084 [Phytophthora parasitica P10297]) HSP 1 Score: 115.161 bits (287), Expect = 1.068e-27 Identity = 48/87 (55.17%), Postives = 69/87 (79.31%), Query Frame = 0
Query: 1 MSFNTDEVNILVHRYLVESGYSHSAFTFFNEGGLDKTNLRAADVPPGALIAYLQKGLEYVSIEEHINEDGSLKQCEEPFTLITPHIC 87
M+ +DEVN LV+RYL ESG+ HSAFTF E L K+++ ++PPGAL++++QKGL+YV IE HINEDG+ ++C+ F+L++PHIC
Sbjct: 1 MTITSDEVNFLVYRYLQESGFLHSAFTFAYESQLAKSSVINTELPPGALVSFMQKGLQYVGIEAHINEDGTERECDGDFSLLSPHIC 87
BLAST of EWM25654.1 vs. NCBI_GenBank
Match: gi|301095355|ref|XP_002896778.1| (WD domain-containing protein, putative [Phytophthora infestans T30-4] >gi|262108661|gb|EEY66713.1| WD domain-containing protein, putative [Phytophthora infestans T30-4]) HSP 1 Score: 115.161 bits (287), Expect = 1.319e-27 Identity = 48/87 (55.17%), Postives = 69/87 (79.31%), Query Frame = 0
Query: 1 MSFNTDEVNILVHRYLVESGYSHSAFTFFNEGGLDKTNLRAADVPPGALIAYLQKGLEYVSIEEHINEDGSLKQCEEPFTLITPHIC 87
M+ +DEVN LV+RYL ESG+ HSAFTF E L K+++ ++PPGAL++++QKGL+YV IE HINEDG+ ++C+ F+L++PHIC
Sbjct: 1 MAITSDEVNFLVYRYLQESGFLHSAFTFAYESQLAKSSVINTELPPGALVSFMQKGLQYVGIEAHINEDGTERECDGDFSLLSPHIC 87 The following BLAST results are available for this feature:
BLAST of EWM25654.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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