EWM25654.1, cds5021 (CDS) Nannochloropsis gaditana

Overview
NameEWM25654.1
Unique Namecds5021
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002464.1:969606..969678 +
Alignment locationCM002464.1:969944..970074 +
Alignment locationCM002464.1:970328..970421 +
Alignment locationCM002464.1:970548..970612 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM25654.1
Productf-box-like wd repeat-containing protein tbl1xr1
Orig transcript idgnl|cribi|Naga_100500g1.3106.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002464.1supercontigCM002464.1:969606..969678 +
CM002464.1supercontigCM002464.1:969944..970074 +
CM002464.1supercontigCM002464.1:970328..970421 +
CM002464.1supercontigCM002464.1:970548..970612 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
Vocabulary: INTERPRO
TermDefinition
IPR006594LisH
Homology
BLAST of EWM25654.1 vs. NCBI_GenBank
Match: gi|585107483|gb|EWM25654.1| (f-box-like wd repeat-containing protein tbl1xr1 [Nannochloropsis gaditana])

HSP 1 Score: 247.284 bits (630), Expect = 4.977e-83
Identity = 120/120 (100.00%), Postives = 120/120 (100.00%), Query Frame = 0
Query:    1 MSFNTDEVNILVHRYLVESGYSHSAFTFFNEGGLDKTNLRAADVPPGALIAYLQKGLEYVSIEEHINEDGSLKQCEEPFTLITPHICSNLRKTEGRLRKAYSSFPPSFPLSLPFSFPPLP 120
            MSFNTDEVNILVHRYLVESGYSHSAFTFFNEGGLDKTNLRAADVPPGALIAYLQKGLEYVSIEEHINEDGSLKQCEEPFTLITPHICSNLRKTEGRLRKAYSSFPPSFPLSLPFSFPPLP
Sbjct:    1 MSFNTDEVNILVHRYLVESGYSHSAFTFFNEGGLDKTNLRAADVPPGALIAYLQKGLEYVSIEEHINEDGSLKQCEEPFTLITPHICSNLRKTEGRLRKAYSSFPPSFPLSLPFSFPPLP 120          
BLAST of EWM25654.1 vs. NCBI_GenBank
Match: gi|698802404|ref|XP_009834231.1| (hypothetical protein, variant 2 [Aphanomyces astaci] >gi|574110609|gb|ETV76107.1| hypothetical protein, variant 2 [Aphanomyces astaci])

HSP 1 Score: 115.546 bits (288), Expect = 3.344e-28
Identity = 50/87 (57.47%), Postives = 68/87 (78.16%), Query Frame = 0
Query:    1 MSFNTDEVNILVHRYLVESGYSHSAFTFFNEGGLDKTNLRAADVPPGALIAYLQKGLEYVSIEEHINEDGSLKQCEEPFTLITPHIC 87
            M+  +DEVN LV+RYL ESG+SH+AFTF  E  L K+++ + +VPPGALI+++QKGL YV IE H+NEDG+ ++CE   TL+ PHIC
Sbjct:    1 MAITSDEVNFLVYRYLQESGFSHAAFTFAYESQLAKSSVISTEVPPGALISFIQKGLLYVGIEAHVNEDGTERECEADITLLNPHIC 87          
BLAST of EWM25654.1 vs. NCBI_GenBank
Match: gi|698802406|ref|XP_009834232.1| (hypothetical protein, variant 1 [Aphanomyces astaci] >gi|574110608|gb|ETV76106.1| hypothetical protein, variant 1 [Aphanomyces astaci])

HSP 1 Score: 116.316 bits (290), Expect = 5.121e-28
Identity = 50/87 (57.47%), Postives = 68/87 (78.16%), Query Frame = 0
Query:    1 MSFNTDEVNILVHRYLVESGYSHSAFTFFNEGGLDKTNLRAADVPPGALIAYLQKGLEYVSIEEHINEDGSLKQCEEPFTLITPHIC 87
            M+  +DEVN LV+RYL ESG+SH+AFTF  E  L K+++ + +VPPGALI+++QKGL YV IE H+NEDG+ ++CE   TL+ PHIC
Sbjct:    1 MAITSDEVNFLVYRYLQESGFSHAAFTFAYESQLAKSSVISTEVPPGALISFIQKGLLYVGIEAHVNEDGTERECEADITLLNPHIC 87          
BLAST of EWM25654.1 vs. NCBI_GenBank
Match: gi|673044039|ref|XP_008875980.1| (hypothetical protein H310_11180 [Aphanomyces invadans] >gi|574468260|gb|ETV95279.1| hypothetical protein H310_11180 [Aphanomyces invadans])

HSP 1 Score: 115.931 bits (289), Expect = 5.503e-28
Identity = 50/87 (57.47%), Postives = 68/87 (78.16%), Query Frame = 0
Query:    1 MSFNTDEVNILVHRYLVESGYSHSAFTFFNEGGLDKTNLRAADVPPGALIAYLQKGLEYVSIEEHINEDGSLKQCEEPFTLITPHIC 87
            M+  +DEVN LV+RYL ESG+SH+AFTF  E  L K+++ + +VPPGALI+++QKGL YV IE H+NEDG+ ++CE   TL+ PHIC
Sbjct:    1 MAITSDEVNFLVYRYLQESGFSHAAFTFAYESQLAKSSVISTEVPPGALISFIQKGLLYVGIEAHVNEDGTERECEADITLLNPHIC 87          
BLAST of EWM25654.1 vs. NCBI_GenBank
Match: gi|698802402|ref|XP_009834230.1| (hypothetical protein H257_09641 [Aphanomyces astaci] >gi|574110607|gb|ETV76105.1| hypothetical protein H257_09641 [Aphanomyces astaci])

HSP 1 Score: 115.546 bits (288), Expect = 1.012e-27
Identity = 50/87 (57.47%), Postives = 68/87 (78.16%), Query Frame = 0
Query:    1 MSFNTDEVNILVHRYLVESGYSHSAFTFFNEGGLDKTNLRAADVPPGALIAYLQKGLEYVSIEEHINEDGSLKQCEEPFTLITPHIC 87
            M+  +DEVN LV+RYL ESG+SH+AFTF  E  L K+++ + +VPPGALI+++QKGL YV IE H+NEDG+ ++CE   TL+ PHIC
Sbjct:    1 MAITSDEVNFLVYRYLQESGFSHAAFTFAYESQLAKSSVISTEVPPGALISFIQKGLLYVGIEAHVNEDGTERECEADITLLNPHIC 87          
BLAST of EWM25654.1 vs. NCBI_GenBank
Match: gi|567962083|gb|ETK87614.1| (hypothetical protein, variant 1 [Phytophthora parasitica] >gi|568020054|gb|ETL94192.1| hypothetical protein, variant 1 [Phytophthora parasitica] >gi|570328446|gb|ETO76394.1| hypothetical protein, variant 1 [Phytophthora parasitica P1976])

HSP 1 Score: 115.161 bits (287), Expect = 1.047e-27
Identity = 48/87 (55.17%), Postives = 69/87 (79.31%), Query Frame = 0
Query:    1 MSFNTDEVNILVHRYLVESGYSHSAFTFFNEGGLDKTNLRAADVPPGALIAYLQKGLEYVSIEEHINEDGSLKQCEEPFTLITPHIC 87
            M+  +DEVN LV+RYL ESG+ HSAFTF  E  L K+++   ++PPGAL++++QKGL+YV IE HINEDG+ ++C+  F+L++PHIC
Sbjct:    1 MTITSDEVNFLVYRYLQESGFLHSAFTFAYESQLAKSSVINTELPPGALVSFMQKGLQYVGIEAHINEDGTERECDGDFSLLSPHIC 87          
BLAST of EWM25654.1 vs. NCBI_GenBank
Match: gi|566024768|gb|ETI47679.1| (hypothetical protein, variant 1 [Phytophthora parasitica P1569] >gi|567990790|gb|ETL41012.1| hypothetical protein, variant 1 [Phytophthora parasitica] >gi|568050481|gb|ETM47420.1| hypothetical protein, variant 1 [Phytophthora parasitica] >gi|570952225|gb|ETP17482.1| hypothetical protein, variant 1 [Phytophthora parasitica CJ01A1] >gi|570986516|gb|ETP45514.1| hypothetical protein, variant 1 [Phytophthora parasitica P10297])

HSP 1 Score: 115.161 bits (287), Expect = 1.047e-27
Identity = 48/87 (55.17%), Postives = 69/87 (79.31%), Query Frame = 0
Query:    1 MSFNTDEVNILVHRYLVESGYSHSAFTFFNEGGLDKTNLRAADVPPGALIAYLQKGLEYVSIEEHINEDGSLKQCEEPFTLITPHIC 87
            M+  +DEVN LV+RYL ESG+ HSAFTF  E  L K+++   ++PPGAL++++QKGL+YV IE HINEDG+ ++C+  F+L++PHIC
Sbjct:    1 MTITSDEVNFLVYRYLQESGFLHSAFTFAYESQLAKSSVINTELPPGALVSFMQKGLQYVGIEAHINEDGTERECDGDFSLLSPHIC 87          
BLAST of EWM25654.1 vs. NCBI_GenBank
Match: gi|567962082|gb|ETK87613.1| (hypothetical protein L915_07972 [Phytophthora parasitica] >gi|568020053|gb|ETL94191.1| hypothetical protein L917_07792 [Phytophthora parasitica] >gi|570328445|gb|ETO76393.1| hypothetical protein F444_08199 [Phytophthora parasitica P1976])

HSP 1 Score: 115.161 bits (287), Expect = 1.068e-27
Identity = 48/87 (55.17%), Postives = 69/87 (79.31%), Query Frame = 0
Query:    1 MSFNTDEVNILVHRYLVESGYSHSAFTFFNEGGLDKTNLRAADVPPGALIAYLQKGLEYVSIEEHINEDGSLKQCEEPFTLITPHIC 87
            M+  +DEVN LV+RYL ESG+ HSAFTF  E  L K+++   ++PPGAL++++QKGL+YV IE HINEDG+ ++C+  F+L++PHIC
Sbjct:    1 MTITSDEVNFLVYRYLQESGFLHSAFTFAYESQLAKSSVINTELPPGALVSFMQKGLQYVGIEAHINEDGTERECDGDFSLLSPHIC 87          
BLAST of EWM25654.1 vs. NCBI_GenBank
Match: gi|566024767|gb|ETI47678.1| (hypothetical protein F443_08145 [Phytophthora parasitica P1569] >gi|567990789|gb|ETL41011.1| hypothetical protein L916_07896 [Phytophthora parasitica] >gi|568050480|gb|ETM47419.1| hypothetical protein L914_07860 [Phytophthora parasitica] >gi|570952224|gb|ETP17481.1| hypothetical protein F441_08119 [Phytophthora parasitica CJ01A1] >gi|570986515|gb|ETP45513.1| hypothetical protein F442_08084 [Phytophthora parasitica P10297])

HSP 1 Score: 115.161 bits (287), Expect = 1.068e-27
Identity = 48/87 (55.17%), Postives = 69/87 (79.31%), Query Frame = 0
Query:    1 MSFNTDEVNILVHRYLVESGYSHSAFTFFNEGGLDKTNLRAADVPPGALIAYLQKGLEYVSIEEHINEDGSLKQCEEPFTLITPHIC 87
            M+  +DEVN LV+RYL ESG+ HSAFTF  E  L K+++   ++PPGAL++++QKGL+YV IE HINEDG+ ++C+  F+L++PHIC
Sbjct:    1 MTITSDEVNFLVYRYLQESGFLHSAFTFAYESQLAKSSVINTELPPGALVSFMQKGLQYVGIEAHINEDGTERECDGDFSLLSPHIC 87          
BLAST of EWM25654.1 vs. NCBI_GenBank
Match: gi|301095355|ref|XP_002896778.1| (WD domain-containing protein, putative [Phytophthora infestans T30-4] >gi|262108661|gb|EEY66713.1| WD domain-containing protein, putative [Phytophthora infestans T30-4])

HSP 1 Score: 115.161 bits (287), Expect = 1.319e-27
Identity = 48/87 (55.17%), Postives = 69/87 (79.31%), Query Frame = 0
Query:    1 MSFNTDEVNILVHRYLVESGYSHSAFTFFNEGGLDKTNLRAADVPPGALIAYLQKGLEYVSIEEHINEDGSLKQCEEPFTLITPHIC 87
            M+  +DEVN LV+RYL ESG+ HSAFTF  E  L K+++   ++PPGAL++++QKGL+YV IE HINEDG+ ++C+  F+L++PHIC
Sbjct:    1 MAITSDEVNFLVYRYLQESGFLHSAFTFAYESQLAKSSVINTELPPGALVSFMQKGLQYVGIEAHINEDGTERECDGDFSLLSPHIC 87          
The following BLAST results are available for this feature:
BLAST of EWM25654.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585107483|gb|EWM25654.1|4.977e-83100.00f-box-like wd repeat-containing protein tbl1xr1 [N... [more]
gi|698802404|ref|XP_009834231.1|3.344e-2857.47hypothetical protein, variant 2 [Aphanomyces astac... [more]
gi|698802406|ref|XP_009834232.1|5.121e-2857.47hypothetical protein, variant 1 [Aphanomyces astac... [more]
gi|673044039|ref|XP_008875980.1|5.503e-2857.47hypothetical protein H310_11180 [Aphanomyces invad... [more]
gi|698802402|ref|XP_009834230.1|1.012e-2757.47hypothetical protein H257_09641 [Aphanomyces astac... [more]
gi|567962083|gb|ETK87614.1|1.047e-2755.17hypothetical protein, variant 1 [Phytophthora para... [more]
gi|566024768|gb|ETI47679.1|1.047e-2755.17hypothetical protein, variant 1 [Phytophthora para... [more]
gi|567962082|gb|ETK87613.1|1.068e-2755.17hypothetical protein L915_07972 [Phytophthora para... [more]
gi|566024767|gb|ETI47678.1|1.068e-2755.17hypothetical protein F443_08145 [Phytophthora para... [more]
gi|301095355|ref|XP_002896778.1|1.319e-2755.17WD domain-containing protein, putative [Phytophtho... [more]
back to top
Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna5033rna5033Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications