rna5032, rna5032 (mRNA) Nannochloropsis gaditana

Overview
Namerna5032
Unique Namerna5032
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1636
Alignment locationCM002464.1:967276..969133 -

Link to JBrowse

Properties
Property NameValue
Productubiquitin-protein ligase
Orig transcript idgnl|cribi|Naga_100500g2.3105.mrna
Orig protein idgnl|cribi|Naga_100500g2.3105
GbkeymRNA
Noteencoded by transcript variant 2; alternatively spliced
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002464.1supercontigCM002464.1:967276..969133 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100500g2gene4859Nannochloropsis gaditana (N. gaditana B-31)gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM25653.1cds5020Nannochloropsis gaditana (N. gaditana B-31)CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna5032rna5032-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna5032 ID=rna5032|Name=rna5032|organism=Nannochloropsis gaditana|type=mRNA|length=1636bp
GCGGTCTGAAAAATTAAGTTCATATGACGCCTGAACGTGTTAAGCTCTCG
ACTGGCCCCGCGTTTCCAGGAACTGAATCGCGACGCTAATGCTACATATC
CCACCTAGAAACGCAGGCTTGTGGTTTGATTTATTTACAACGCCGGCTTC
GTCTCTCTCAGCCGTCGCCACGGAGAGTCAACCTCCCTCCTTGCCCCTGC
CCGCTGACACTCAAACCACTGTGCTGGACTCTGCCATGGCCAGTCAACAA
CGTGCTCTCCTCCAAGGAGATCGTCTGGCGAAAGAGCTTGCGGCACAGCA
AGCAAGGGCGGCTGCCAGGGCGTACGTGACCGATAAAGGGTGCATGAACG
TCTCTGTCACTGAGAGGGTCCTCAATAGAGGCACCTACTCCGGCGCTGAG
GCGGAAGAATTGGCCATCGCTGCCGGAGGGGGCCTGTCAGTGCACAAGGA
CAACACACTCGAAATCCTTCGGGAGCGAGAGCTTGGGAGGCAGAGGCAAG
CAAAAGACGCGCAGAAGGAGGCAAATTTAAAAGCAAAACTTCTCCAGCAA
CAAGAGAATTTTCGAAAAGAAAAAGCGACGGGCAAGGGGGACTTGGAAGG
CCAAGGGAGCGTGGAGAGAGACTCGACTCCCCTCCCCGCAGGGTGGGAAG
CCGTCATGGACCCTCAGGGCTCCGGCGACTACTATTACTGGCACGCGGGT
ACGAATGTGACCACGTGGGAACGCCCTTCCTCCCAAATTCCGACGGCTGT
ACCGTCAGGGGACACGGGTGTTACGACTCTGAAAAACCACACTTCGGGTA
GCTTTCTTTCCTCGGAAACTTCAGGAGGCGGGGAACCAGGACACGGGAGA
GAACCGACCGGGCGGGGAGGCACCGAACTTCCCCGGGCAAATGACCTTGG
GAGCTTGCCAGAGGGGTGGAAGGAGGTCAAGCACGCAGCGACGGGACAGA
TCTGTTATGTCCACGCGGCTAGCGGGGTGAAACGCTGGTCCCGTCCAACA
ATTGCAGGCGACGTGACGTCTGACATACAGCAAACTCGACAAACCCATCT
GGAAGCCGCTCGGCAGGCAGAGCTGGCGCAAACGGGGGCAAAGGGAGGAA
AAGATGGGGGAGGGAAGAAGAGGGGACGGGAGGAAATCGACCCGTTGGAT
CCCACTGGAGGGAGAGGAAGTGGCGGGTGGACCCAAGGATTGGGCGGTGG
GGATAGAATGGCCGATAGCACCGCTGGCGGCAGTCTATGGCAACAACGAC
CTTTGCCAGCACCAGGAGCAGTGTTGAAAAAGCAAGGAGGCGGTAGGGGG
GCAGGACGAGGAAACCAGGGCCAATATCCCATGCGGCGGTGAGAAAAGCG
CATGGTGAGGACTGAAAATCTGTTCACACATCCGAGGGGCTAGTAAGATG
AAGAGGGAAGGATTATCTGTGCGTCAGAATGATTTGAAGGCAGTGTATGA
TGAGAAAAAATGGCACGAATAACAATTTTGGTAGGGTAAAAGGAAAAGTT
GAACCGCATAATTTTCATATGCCTCAGCACATTGTTTGATAACTTTTCGC
AGACACCTCTTTGCGATGGTACCTGTGTCGAAACTGCTATCGCGGTTCCA
ACAACTATAGAGGAAGAGTCTGTGGATGGAAATATC
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protein sequence of rna5032

>rna5032-protein ID=rna5032-protein|Name=rna5032|organism=Nannochloropsis gaditana|type=polypeptide|length=343bp
MYNSSFASKGCMNVSVTERVLNRGTYSGAEAEELAIAAGGGLSVHKDNTL
EILRERELGRQRQAKDAQKEANLKAKLLQQQENFRKEKATGKGDLEGQGS
VERDSTPLPAGWEAVMDPQGSGDYYYWHAGTNVTTWERPSSQIPTAVPSG
DTGVTTLKNHTSGSFLSSETSGGGEPGHGREPTGRGGTELPRANDLGSLP
EGWKEVKHAATGQICYVHAASGVKRWSRPTIAGDVTSDIQQTRQTHLEAA
RQAELAQTGAKGGKDGGGKKRGREEIDPLDPTGGRGSGGWTQGLGGGDRM
ADSTAGGSLWQQRPLPAPGAVLKKQGGGRGAGRGNQGQYPMRR
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mRNA from alignment at CM002464.1:967276..969133-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna5032 ID=rna5032|Name=rna5032|organism=Nannochloropsis gaditana|type=mRNA|length=1858bp|location=Sequence derived from alignment at CM002464.1:967276..969133- (Nannochloropsis gaditana)
GCGGTCTGAAAAATTAAGTTCATATGACGCCTGAACGTGTTAAGCTCTCG
ACTGGCCCCGCGTTTCCAGGAACTGAATCGCGACGCTAATGCTACATATC
CCACCTAGAAACGCAGGCTTGTGGTTTGATTTATTTACAACGCCGGCTTC
GTCTCTCTCAGCCGTCGCCACGGAGAGTCAACCTCCCTCCTTGCCCCTGC
CCGCTGACACTCAAACCACTGTGCTGGACTCTGCCATGGCCAGTCAACAA
CGTGCTCTCCTCCAAGGAGATCGTCTGGCGAAAGAGCTTGCGGCACAGCA
AGCAAGGGCGGCTGCCAGGGCGTACGTGACCGATAAAGGTAGGCGCCTCT
GGAATATTGGGATTTTATGTAACATAGTACGTGCCTCCCTCCCTTATCCA
CACGTTAAACGCGCAGCAACGTGTTCCGCATGGAGTTAGTACCTATACCA
CTTGATTTCTTTGCCCCAGTCTCCTTTTCAAAACCTGCTCGGCAGAGGAG
ACCTTGAAAAAGTCTGATCTTCCTCACTCCCCATGTATAATTCGTCCTTT
GCTTCAAAAGGGTGCATGAACGTCTCTGTCACTGAGAGGGTCCTCAATAG
AGGCACCTACTCCGGCGCTGAGGCGGAAGAATTGGCCATCGCTGCCGGAG
GGGGCCTGTCAGTGCACAAGGACAACACACTCGAAATCCTTCGGGAGCGA
GAGCTTGGGAGGCAGAGGCAAGCAAAAGACGCGCAGAAGGAGGCAAATTT
AAAAGCAAAACTTCTCCAGCAACAAGAGAATTTTCGAAAAGAAAAAGCGA
CGGGCAAGGGGGACTTGGAAGGCCAAGGGAGCGTGGAGAGAGACTCGACT
CCCCTCCCCGCAGGGTGGGAAGCCGTCATGGACCCTCAGGGCTCCGGCGA
CTACTATTACTGGCACGCGGGTACGAATGTGACCACGTGGGAACGCCCTT
CCTCCCAAATTCCGACGGCTGTACCGTCAGGGGACACGGGTGTTACGACT
CTGAAAAACCACACTTCGGGTAGCTTTCTTTCCTCGGAAACTTCAGGAGG
CGGGGAACCAGGACACGGGAGAGAACCGACCGGGCGGGGAGGCACCGAAC
TTCCCCGGGCAAATGACCTTGGGAGCTTGCCAGAGGGGTGGAAGGAGGTC
AAGCACGCAGCGACGGGACAGATCTGTTATGTCCACGCGGCTAGCGGGGT
GAAACGCTGGTCCCGTCCAACAATTGCAGGCGACGTGACGTCTGACATAC
AGCAAACTCGACAAACCCATCTGGAAGCCGCTCGGCAGGCAGAGCTGGCG
CAAACGGGGGCAAAGGGAGGAAAAGATGGGGGAGGGAAGAAGAGGGGACG
GGAGGAAATCGACCCGTTGGATCCCACTGGAGGGAGAGGAAGTGGCGGGT
GGACCCAAGGATTGGGCGGTGGGGATAGAATGGCCGATAGCACCGCTGGC
GGCAGTCTATGGCAACAACGACCTTTGCCAGCACCAGGAGCAGTGTTGAA
AAAGCAAGGAGGCGGTAGGGGGGCAGGACGAGGAAACCAGGGCCAATATC
CCATGCGGCGGTGAGAAAAGCGCATGGTGAGGACTGAAAATCTGTTCACA
CATCCGAGGGGCTAGTAAGATGAAGAGGGAAGGATTATCTGTGCGTCAGA
ATGATTTGAAGGCAGTGTATGATGAGAAAAAATGGCACGAATAACAATTT
TGGTAGGGTAAAAGGAAAAGTTGAACCGCATAATTTTCATATGCCTCAGC
ACATTGTTTGATAACTTTTCGCAGACACCTCTTTGCGATGGTACCTGTGT
CGAAACTGCTATCGCGGTTCCAACAACTATAGAGGAAGAGTCTGTGGATG
GAAATATC
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Coding sequence (CDS) from alignment at CM002464.1:967276..969133-

>rna5032 ID=rna5032|Name=rna5032|organism=Nannochloropsis gaditana|type=CDS|length=1032bp|location=Sequence derived from alignment at CM002464.1:967276..969133- (Nannochloropsis gaditana)
ATGTATAATTCGTCCTTTGCTTCAAAAGGGTGCATGAACGTCTCTGTCAC
TGAGAGGGTCCTCAATAGAGGCACCTACTCCGGCGCTGAGGCGGAAGAAT
TGGCCATCGCTGCCGGAGGGGGCCTGTCAGTGCACAAGGACAACACACTC
GAAATCCTTCGGGAGCGAGAGCTTGGGAGGCAGAGGCAAGCAAAAGACGC
GCAGAAGGAGGCAAATTTAAAAGCAAAACTTCTCCAGCAACAAGAGAATT
TTCGAAAAGAAAAAGCGACGGGCAAGGGGGACTTGGAAGGCCAAGGGAGC
GTGGAGAGAGACTCGACTCCCCTCCCCGCAGGGTGGGAAGCCGTCATGGA
CCCTCAGGGCTCCGGCGACTACTATTACTGGCACGCGGGTACGAATGTGA
CCACGTGGGAACGCCCTTCCTCCCAAATTCCGACGGCTGTACCGTCAGGG
GACACGGGTGTTACGACTCTGAAAAACCACACTTCGGGTAGCTTTCTTTC
CTCGGAAACTTCAGGAGGCGGGGAACCAGGACACGGGAGAGAACCGACCG
GGCGGGGAGGCACCGAACTTCCCCGGGCAAATGACCTTGGGAGCTTGCCA
GAGGGGTGGAAGGAGGTCAAGCACGCAGCGACGGGACAGATCTGTTATGT
CCACGCGGCTAGCGGGGTGAAACGCTGGTCCCGTCCAACAATTGCAGGCG
ACGTGACGTCTGACATACAGCAAACTCGACAAACCCATCTGGAAGCCGCT
CGGCAGGCAGAGCTGGCGCAAACGGGGGCAAAGGGAGGAAAAGATGGGGG
AGGGAAGAAGAGGGGACGGGAGGAAATCGACCCGTTGGATCCCACTGGAG
GGAGAGGAAGTGGCGGGTGGACCCAAGGATTGGGCGGTGGGGATAGAATG
GCCGATAGCACCGCTGGCGGCAGTCTATGGCAACAACGACCTTTGCCAGC
ACCAGGAGCAGTGTTGAAAAAGCAAGGAGGCGGTAGGGGGGCAGGACGAG
GAAACCAGGGCCAATATCCCATGCGGCGGTGA
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Synonyms
Publications