EWM25653.1, cds5020 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM25653.1 vs. NCBI_GenBank
Match: gi|585107482|gb|EWM25653.1| (ubiquitin-protein ligase [Nannochloropsis gaditana]) HSP 1 Score: 692.575 bits (1786), Expect = 0.000e+0 Identity = 343/343 (100.00%), Postives = 343/343 (100.00%), Query Frame = 0
Query: 1 MYNSSFASKGCMNVSVTERVLNRGTYSGAEAEELAIAAGGGLSVHKDNTLEILRERELGRQRQAKDAQKEANLKAKLLQQQENFRKEKATGKGDLEGQGSVERDSTPLPAGWEAVMDPQGSGDYYYWHAGTNVTTWERPSSQIPTAVPSGDTGVTTLKNHTSGSFLSSETSGGGEPGHGREPTGRGGTELPRANDLGSLPEGWKEVKHAATGQICYVHAASGVKRWSRPTIAGDVTSDIQQTRQTHLEAARQAELAQTGAKGGKDGGGKKRGREEIDPLDPTGGRGSGGWTQGLGGGDRMADSTAGGSLWQQRPLPAPGAVLKKQGGGRGAGRGNQGQYPMRR 343
MYNSSFASKGCMNVSVTERVLNRGTYSGAEAEELAIAAGGGLSVHKDNTLEILRERELGRQRQAKDAQKEANLKAKLLQQQENFRKEKATGKGDLEGQGSVERDSTPLPAGWEAVMDPQGSGDYYYWHAGTNVTTWERPSSQIPTAVPSGDTGVTTLKNHTSGSFLSSETSGGGEPGHGREPTGRGGTELPRANDLGSLPEGWKEVKHAATGQICYVHAASGVKRWSRPTIAGDVTSDIQQTRQTHLEAARQAELAQTGAKGGKDGGGKKRGREEIDPLDPTGGRGSGGWTQGLGGGDRMADSTAGGSLWQQRPLPAPGAVLKKQGGGRGAGRGNQGQYPMRR
Sbjct: 1 MYNSSFASKGCMNVSVTERVLNRGTYSGAEAEELAIAAGGGLSVHKDNTLEILRERELGRQRQAKDAQKEANLKAKLLQQQENFRKEKATGKGDLEGQGSVERDSTPLPAGWEAVMDPQGSGDYYYWHAGTNVTTWERPSSQIPTAVPSGDTGVTTLKNHTSGSFLSSETSGGGEPGHGREPTGRGGTELPRANDLGSLPEGWKEVKHAATGQICYVHAASGVKRWSRPTIAGDVTSDIQQTRQTHLEAARQAELAQTGAKGGKDGGGKKRGREEIDPLDPTGGRGSGGWTQGLGGGDRMADSTAGGSLWQQRPLPAPGAVLKKQGGGRGAGRGNQGQYPMRR 343
BLAST of EWM25653.1 vs. NCBI_GenBank
Match: gi|585107481|gb|EWM25652.1| (ubiquitin-protein ligase [Nannochloropsis gaditana]) HSP 1 Score: 676.781 bits (1745), Expect = 0.000e+0 Identity = 335/338 (99.11%), Postives = 335/338 (99.11%), Query Frame = 0
Query: 6 FASKGCMNVSVTERVLNRGTYSGAEAEELAIAAGGGLSVHKDNTLEILRERELGRQRQAKDAQKEANLKAKLLQQQENFRKEKATGKGDLEGQGSVERDSTPLPAGWEAVMDPQGSGDYYYWHAGTNVTTWERPSSQIPTAVPSGDTGVTTLKNHTSGSFLSSETSGGGEPGHGREPTGRGGTELPRANDLGSLPEGWKEVKHAATGQICYVHAASGVKRWSRPTIAGDVTSDIQQTRQTHLEAARQAELAQTGAKGGKDGGGKKRGREEIDPLDPTGGRGSGGWTQGLGGGDRMADSTAGGSLWQQRPLPAPGAVLKKQGGGRGAGRGNQGQYPMRR 343
KGCMNVSVTERVLNRGTYSGAEAEELAIAAGGGLSVHKDNTLEILRERELGRQRQAKDAQKEANLKAKLLQQQENFRKEKATGKGDLEGQGSVERDSTPLPAGWEAVMDPQGSGDYYYWHAGTNVTTWERPSSQIPTAVPSGDTGVTTLKNHTSGSFLSSETSGGGEPGHGREPTGRGGTELPRANDLGSLPEGWKEVKHAATGQICYVHAASGVKRWSRPTIAGDVTSDIQQTRQTHLEAARQAELAQTGAKGGKDGGGKKRGREEIDPLDPTGGRGSGGWTQGLGGGDRMADSTAGGSLWQQRPLPAPGAVLKKQGGGRGAGRGNQGQYPMRR
Sbjct: 80 VTDKGCMNVSVTERVLNRGTYSGAEAEELAIAAGGGLSVHKDNTLEILRERELGRQRQAKDAQKEANLKAKLLQQQENFRKEKATGKGDLEGQGSVERDSTPLPAGWEAVMDPQGSGDYYYWHAGTNVTTWERPSSQIPTAVPSGDTGVTTLKNHTSGSFLSSETSGGGEPGHGREPTGRGGTELPRANDLGSLPEGWKEVKHAATGQICYVHAASGVKRWSRPTIAGDVTSDIQQTRQTHLEAARQAELAQTGAKGGKDGGGKKRGREEIDPLDPTGGRGSGGWTQGLGGGDRMADSTAGGSLWQQRPLPAPGAVLKKQGGGRGAGRGNQGQYPMRR 417
BLAST of EWM25653.1 vs. NCBI_GenBank
Match: gi|553178886|ref|XP_005852617.1| (growth arrest-specific 7, partial [Nannochloropsis gaditana CCMP526] >gi|422295917|gb|EKU23216.1| growth arrest-specific 7, partial [Nannochloropsis gaditana CCMP526]) HSP 1 Score: 312.768 bits (800), Expect = 1.440e-103 Identity = 150/152 (98.68%), Postives = 151/152 (99.34%), Query Frame = 0
Query: 9 KGCMNVSVTERVLNRGTYSGAEAEELAIAAGGGLSVHKDNTLEILRERELGRQRQAKDAQKEANLKAKLLQQQENFRKEKATGKGDLEGQGSVERDSTPLPAGWEAVMDPQGSGDYYYWHAGTNVTTWERPSSQIPTAVPSGDTGVTTLKNH 160
KGCMNVSVTERVLNRGTYSGAEAEELAIAAGGGLSVHKDNTLEILRERELGRQRQAKDAQKEANLKAKLLQQQENFRKEKATGKGD+EGQGSVERDSTPLPAGWEAVMDPQGSGDYYYWHAGTNVTTWERPSSQIPTAVPSGDTGV TLKNH
Sbjct: 77 KGCMNVSVTERVLNRGTYSGAEAEELAIAAGGGLSVHKDNTLEILRERELGRQRQAKDAQKEANLKAKLLQQQENFRKEKATGKGDVEGQGSVERDSTPLPAGWEAVMDPQGSGDYYYWHAGTNVTTWERPSSQIPTAVPSGDTGVPTLKNH 228
BLAST of EWM25653.1 vs. NCBI_GenBank
Match: gi|298710947|emb|CBJ32257.1| (conserved unknown protein [Ectocarpus siliculosus]) HSP 1 Score: 104.76 bits (260), Expect = 1.330e-21 Identity = 88/241 (36.51%), Postives = 111/241 (46.06%), Query Frame = 0
Query: 97 GQGSVERDSTPLPAGWEAVMDPQGSGDYYYWHAGTNVTTWERPSSQIPTAVPSGDTGVTTLKNHTSGSFLSSETSGGGEPGHGREPTGRGGTELPRANDLGSLPEGWKEVKHAATGQICYVHAASGVKRWSRP-TIAGDVTSDIQQTRQTHLEAARQAELAQT----------GAKGGKDGGGKKRGR--EEIDPLDPTGGRGSGGWTQGLGG-GDRMADSTAGGSLWQQRPLPAPGAVLK 323
G+G + PLPAGW+ + DP+ SG Y+W+ TTW RP TG + + GS ++ G LPEGWK V HAATGQ YVH ASG + ++ P + D +S Q ++ A G G KK+GR EIDPLDPTG G G W+ GL G+RMADSTA G LWQQRP PAPG +L+
Sbjct: 192 GEGGGDSTPPPLPAGWKEIKDPK-SGGVYFWNKAKGATTWVRP------------TGPASGDSADGGSASGGGSTPG-------------------------LPEGWKAVTHAATGQTHYVHEASGKRSFTLPGSEPPDASSSSGQRQRGREGGGGHAGGGGGGAASSARGSEGRNRGDSNRPKKKGRGSWEIDPLDPTGKTG-GKWSDGLVQVGERMADSTASGPLWQQRPYPAPGKILR 393
BLAST of EWM25653.1 vs. NCBI_GenBank
Match: gi|565368987|ref|XP_006351120.1| (PREDICTED: uncharacterized protein LOC102606319 [Solanum tuberosum] >gi|971557049|ref|XP_015165837.1| PREDICTED: uncharacterized protein LOC102606319 [Solanum tuberosum]) HSP 1 Score: 81.6481 bits (200), Expect = 2.305e-13 Identity = 71/232 (30.60%), Postives = 104/232 (44.83%), Query Frame = 0
Query: 108 LPAGWEAVMDPQGSGDYYYWHAGTNVTTWERPSSQIPTAVPSGDTGVTTLKNHTSGSFLSSETSGGGEPGHGREPTGRGGTELPRANDLGS----LPEGWKEVKHAA----TGQICYVHAASGVKRWSRPTIAGDVTSDIQQTRQTHLEAARQAELAQTGAKGGKDGGGKKRGRE--EIDPLDPTGGRGS--GGWTQGLGGGD-RMADSTAGGSLWQQRPLPAPGAVLKKQG 326
LP W+ V+D + SG YY+++ TNV+ WE PS A+ D V N T+ + + ++ PR ++ G L + W KH Q YV A V+R + + VT D + Q +++ +K K K+ E E+DP+DP+ + GGW GL G R AD+TA G L+QQRP P+PGAVL+K
Sbjct: 294 LPEYWQEVLD-ESSGQKYYYNSQTNVSQWEHPSKPRQVAIQHHDRAVAN--NATNVTRVDQAST------------------FPRCSECGGWGVGLVQSWGYCKHCTRVLKLPQSQYVSA--NVERQQQTSGDAGVTEDTDKKFQR-----QRSSFKPPMSKSNKKDKRKRTNDEDDELDPMDPSSYSDAPRGGWVVGLKGVQPRAADTTATGPLFQQRPYPSPGAVLRKNA 497
BLAST of EWM25653.1 vs. NCBI_GenBank
Match: gi|1150672096|ref|XP_020245206.1| (uncharacterized protein LOC109823090 [Asparagus officinalis] >gi|1142000892|gb|ONK81708.1| uncharacterized protein A4U43_C01F32070 [Asparagus officinalis]) HSP 1 Score: 78.5666 bits (192), Expect = 2.511e-12 Identity = 77/259 (29.73%), Postives = 113/259 (43.63%), Query Frame = 0
Query: 84 FRKEKATGKGDLE--GQGSVERDSTP---LPAGWEAVMDPQGSGDYYYWHAGTNVTTWERPS------SQIPTAVPSGDTGVTTLKNHTSGSFLSSETSGGGEPGHGREPTGRGGTELPRANDLGSLPEGWKEVKHAATGQICYVHAASGVKRWSRPTIAGDVTSDIQQTRQTH---LEAARQAELAQTGAKGGK-DGGGKKRGREEIDPLDPTGGRGS--GGWTQGLGGGD-RMADSTAGGSLWQQRPLPAPGAVLKK 324
F EK TG+ E G+ + + +TP LP WE +D +G YY++ TNV+ WE PS SQ VP+G +G EP + ++ G GG + L + W H C +++S P G T + H + + + + KG K D + + +E+DP+DP+ + GGW GL G R AD+TA G L+QQRP P+PGAVL+K
Sbjct: 406 FYNEK-TGQTQWEYPGETACSQQNTPSSSLPEDWEEAVD-DSTGQKYYYNTKTNVSQWELPSTTNQVISQHADCVPTG---------------YEFNITGNHEPSYKKKCMGCGGWGV-------GLVQAWGYCNH------CTRMLNLPYQQYSVPNFNGQEPKSFL-THKDHPGKMTSKQSSSSKPPLNKGNKRDSRKRHKDDDELDPMDPSSYSDAPRGGWVVGLKGVQPRAADTTATGPLFQQRPYPSPGAVLRK 633
BLAST of EWM25653.1 vs. NCBI_GenBank
Match: gi|970059745|ref|XP_015056623.1| (PREDICTED: uncharacterized protein LOC107002929 [Solanum pennellii]) HSP 1 Score: 77.0258 bits (188), Expect = 6.712e-12 Identity = 70/230 (30.43%), Postives = 105/230 (45.65%), Query Frame = 0
Query: 108 LPAGWEAVMDPQGSGDYYYWHAGTNVTTWERPSSQIPTAVPSGDTGVTTLKNHTSGSFLSSETSGGGEPGHGREPTGRGGTELPRANDLGS----LPEGWKEVKHAA----TGQICYVHAASGVKRWSRPTIAGDVTSDIQQTRQTHLEAARQAELAQTGAKGGKDGGGKKRGRE--EIDPLDPTGGRGS--GGWTQGLGGGD-RMADSTAGGSLWQQRPLPAPGAVLKK 324
LP W+ V+D + +G YY+++ TNV+ WE PS A+ D VT N T+ +++ ++ R + G L + W KH Q YV A V+R + + VT D ++ Q +++ +K K K+ E E+DP+DP+ + GGW GL G R AD+TA G L+QQRP P+PGAVL+K
Sbjct: 290 LPEYWQEVLD-ESTGQKYYYNSQTNVSQWEHPSKPQHVAIQHHDGTVTN--NATNVTWVDQAST------------------FQRCIECGGWGVGLVQSWGYCKHCTRVLKLPQSQYVSA--NVERQQQTSGDAGVTEDSEKKFQR-----QRSSFKPPMSKSNKKDKRKRTNDEDDELDPMDPSSYSDAPRGGWVVGLKGVQPRAADTTATGPLFQQRPYPSPGAVLRK 491
BLAST of EWM25653.1 vs. NCBI_GenBank
Match: gi|1083888883|ref|XP_018630685.1| (PREDICTED: uncharacterized protein LOC104109000 isoform X1 [Nicotiana tomentosiformis] >gi|1083888885|ref|XP_018630686.1| PREDICTED: uncharacterized protein LOC104109000 isoform X1 [Nicotiana tomentosiformis] >gi|1083888887|ref|XP_018630687.1| PREDICTED: uncharacterized protein LOC104109000 isoform X1 [Nicotiana tomentosiformis] >gi|1083888889|ref|XP_018630688.1| PREDICTED: uncharacterized protein LOC104109000 isoform X1 [Nicotiana tomentosiformis] >gi|1083888891|ref|XP_018630689.1| PREDICTED: uncharacterized protein LOC104109000 isoform X1 [Nicotiana tomentosiformis]) HSP 1 Score: 77.0258 bits (188), Expect = 7.492e-12 Identity = 72/235 (30.64%), Postives = 104/235 (44.26%), Query Frame = 0
Query: 108 LPAGWEAVMDPQGSGDYYYWHAGTNVTTWERPSSQIPTAVPSGDTGVTTLKNHTSGSFLSSETSGGGEPGHGREPTGRGGTELPRANDLGS----LPEGWKEVKHAA----TGQICYVHAASGVKRWSRPTIAGDVTSDIQQTRQTHLEAARQAELAQTGAKGGKDGGGKKRGR-----EEIDPLDPTGGRGS--GGWTQGLGGGD-RMADSTAGGSLWQQRPLPAPGAVLKKQG 326
LP W+ V D + +G YY+++ TNV+ WE PS P VP + N T+ ++ G + R + G L + W KH Q Y+ A V+R + + T D ++ R HL+ R + G KD KR R +E+DP+DP+ + GGW GL G R AD+TA G L+QQRP P+PGAVL++
Sbjct: 320 LPEFWQEVFD-ESTGQKYYYNSKTNVSQWEHPSK--PQQVPMQHHDRAVVSNATNITW------------------GDQDSTFRRCIECGGWGVGLVQSWGYCKHCTRVLKLPQSHYLSA--NVERQQQISGYAGATEDTEK-RFDHLDC-RSSSKPPMGKSNKKD----KRKRTYDEDDELDPMDPSSYSDAPRGGWVVGLKGVQPRAADTTATGPLFQQRPYPSPGAVLRRNA 525
BLAST of EWM25653.1 vs. NCBI_GenBank
Match: gi|357126488|ref|XP_003564919.1| (PREDICTED: uncharacterized protein LOC100840198 [Brachypodium distachyon] >gi|944075703|gb|KQK11187.1| hypothetical protein BRADI_2g58667 [Brachypodium distachyon]) HSP 1 Score: 76.6406 bits (187), Expect = 8.782e-12 Identity = 83/317 (26.18%), Postives = 126/317 (39.75%), Query Frame = 0
Query: 47 DNTLEILRERELGR-------------QRQAKDAQKEANLKAKLLQQQENFRKEKATGKGDLEGQGS--------------VERDSTP-LPAGWEAVMDPQGSGDYYYWHAGTNVTTWERPSSQIPTAVPSGDTGVTTLKNHTSGSFLSSETSGGGEPGHGREPTGRGGTELPRANDLGSLPEGWKEVKHAATGQIC----YVHAASGVKRWS---RPTIAGDVTSDIQQTRQTHLEAARQAELAQTGAKGGKDGGGKKRGR-EEIDPLDPTGGRGS--GGWTQGLGG-GDRMADSTAGGSLWQQRPLPAPGAVLKK 324
D+ E L++R R +Q D+Q+ N+ A+ L K+ TG Q + V+ + P LP WE +D + +G YY++ T+ T WE P+S P VP T V + + H + +G GG + L + W H Q Y ++ + + S P I G+V + R + +G KD + +E+DP+DP+ + GGW GL G R AD+TA G L+QQRP P+PGAVL+K
Sbjct: 246 DDLPEFLKQRLKARGILKDKAANDNSAAKQKADSQEGHNISAQELPPGWVEAKDPTTGASYFYNQSTGVTQWDRPGGAVNPVQHQAAPSLPENWEEALD-KSTGQKYYYNTKTHATQWEPPTSVQPGVVPHASTDVAVQPTAQNADLCNP---------HMQRCSGCGGWGI-------GLVQPWGYCNHCTRVQNLPFQQYPSYSNNIVQSSGTNAPKIQGNVAT-----------KDRSSTKPPSGKANKKDNRKRNHAEDDELDPMDPSSYSDAPRGGWVVGLKGVQPRAADTTASGPLFQQRPYPSPGAVLRK 534
BLAST of EWM25653.1 vs. NCBI_GenBank
Match: gi|1104639231|ref|XP_019066424.1| (PREDICTED: uncharacterized protein LOC101257622 [Solanum lycopersicum]) HSP 1 Score: 76.6406 bits (187), Expect = 9.213e-12 Identity = 70/230 (30.43%), Postives = 105/230 (45.65%), Query Frame = 0
Query: 108 LPAGWEAVMDPQGSGDYYYWHAGTNVTTWERPSSQIPTAVPSGDTGVTTLKNHTSGSFLSSETSGGGEPGHGREPTGRGGTELPRANDLGS----LPEGWKEVKHAA----TGQICYVHAASGVKRWSRPTIAGDVTSDIQQTRQTHLEAARQAELAQTGAKGGKDGGGKKRGRE--EIDPLDPTGGRGS--GGWTQGLGGGD-RMADSTAGGSLWQQRPLPAPGAVLKK 324
LP W+ V+D + +G YY+++ TNV+ WE PS A+ D VT N T+ +++ ++ R + G L + W KH Q YV A V+R + + VT D ++ Q +++ +K K K+ E E+DP+DP+ + GGW GL G R AD+TA G L+QQRP P+PGAVL+K
Sbjct: 306 LPEYWQEVLD-ESTGQKYYYNSQTNVSQWEHPSKPQQVAIQHHDGTVTN--NATNVTWVDQAST------------------FQRCIECGGWGVGLVQSWGYCKHCTRVLNLPQSQYVSA--NVERQQQTSGDAGVTEDSEKKFQR-----QRSSFKPPMSKSNKKDKRKRTNDEDDELDPMDPSSYSDAPRGGWVVGLKGVQPRAADTTATGPLFQQRPYPSPGAVLRK 507 The following BLAST results are available for this feature:
BLAST of EWM25653.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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