EWM25653.1, cds5020 (CDS) Nannochloropsis gaditana

Overview
NameEWM25653.1
Unique Namecds5020
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002464.1:967570..968601 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM25653.1
Productubiquitin-protein ligase
Orig transcript idgnl|cribi|Naga_100500g2.3105.mrna
GbkeyCDS
Noteencoded by transcript variant 2; alternatively spliced
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002464.1supercontigCM002464.1:967570..968601 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0003824catalytic activity
GO:0005515protein binding
Vocabulary: INTERPRO
TermDefinition
IPR001202WW_dom
Homology
BLAST of EWM25653.1 vs. NCBI_GenBank
Match: gi|585107482|gb|EWM25653.1| (ubiquitin-protein ligase [Nannochloropsis gaditana])

HSP 1 Score: 692.575 bits (1786), Expect = 0.000e+0
Identity = 343/343 (100.00%), Postives = 343/343 (100.00%), Query Frame = 0
Query:    1 MYNSSFASKGCMNVSVTERVLNRGTYSGAEAEELAIAAGGGLSVHKDNTLEILRERELGRQRQAKDAQKEANLKAKLLQQQENFRKEKATGKGDLEGQGSVERDSTPLPAGWEAVMDPQGSGDYYYWHAGTNVTTWERPSSQIPTAVPSGDTGVTTLKNHTSGSFLSSETSGGGEPGHGREPTGRGGTELPRANDLGSLPEGWKEVKHAATGQICYVHAASGVKRWSRPTIAGDVTSDIQQTRQTHLEAARQAELAQTGAKGGKDGGGKKRGREEIDPLDPTGGRGSGGWTQGLGGGDRMADSTAGGSLWQQRPLPAPGAVLKKQGGGRGAGRGNQGQYPMRR 343
            MYNSSFASKGCMNVSVTERVLNRGTYSGAEAEELAIAAGGGLSVHKDNTLEILRERELGRQRQAKDAQKEANLKAKLLQQQENFRKEKATGKGDLEGQGSVERDSTPLPAGWEAVMDPQGSGDYYYWHAGTNVTTWERPSSQIPTAVPSGDTGVTTLKNHTSGSFLSSETSGGGEPGHGREPTGRGGTELPRANDLGSLPEGWKEVKHAATGQICYVHAASGVKRWSRPTIAGDVTSDIQQTRQTHLEAARQAELAQTGAKGGKDGGGKKRGREEIDPLDPTGGRGSGGWTQGLGGGDRMADSTAGGSLWQQRPLPAPGAVLKKQGGGRGAGRGNQGQYPMRR
Sbjct:    1 MYNSSFASKGCMNVSVTERVLNRGTYSGAEAEELAIAAGGGLSVHKDNTLEILRERELGRQRQAKDAQKEANLKAKLLQQQENFRKEKATGKGDLEGQGSVERDSTPLPAGWEAVMDPQGSGDYYYWHAGTNVTTWERPSSQIPTAVPSGDTGVTTLKNHTSGSFLSSETSGGGEPGHGREPTGRGGTELPRANDLGSLPEGWKEVKHAATGQICYVHAASGVKRWSRPTIAGDVTSDIQQTRQTHLEAARQAELAQTGAKGGKDGGGKKRGREEIDPLDPTGGRGSGGWTQGLGGGDRMADSTAGGSLWQQRPLPAPGAVLKKQGGGRGAGRGNQGQYPMRR 343          
BLAST of EWM25653.1 vs. NCBI_GenBank
Match: gi|585107481|gb|EWM25652.1| (ubiquitin-protein ligase [Nannochloropsis gaditana])

HSP 1 Score: 676.781 bits (1745), Expect = 0.000e+0
Identity = 335/338 (99.11%), Postives = 335/338 (99.11%), Query Frame = 0
Query:    6 FASKGCMNVSVTERVLNRGTYSGAEAEELAIAAGGGLSVHKDNTLEILRERELGRQRQAKDAQKEANLKAKLLQQQENFRKEKATGKGDLEGQGSVERDSTPLPAGWEAVMDPQGSGDYYYWHAGTNVTTWERPSSQIPTAVPSGDTGVTTLKNHTSGSFLSSETSGGGEPGHGREPTGRGGTELPRANDLGSLPEGWKEVKHAATGQICYVHAASGVKRWSRPTIAGDVTSDIQQTRQTHLEAARQAELAQTGAKGGKDGGGKKRGREEIDPLDPTGGRGSGGWTQGLGGGDRMADSTAGGSLWQQRPLPAPGAVLKKQGGGRGAGRGNQGQYPMRR 343
               KGCMNVSVTERVLNRGTYSGAEAEELAIAAGGGLSVHKDNTLEILRERELGRQRQAKDAQKEANLKAKLLQQQENFRKEKATGKGDLEGQGSVERDSTPLPAGWEAVMDPQGSGDYYYWHAGTNVTTWERPSSQIPTAVPSGDTGVTTLKNHTSGSFLSSETSGGGEPGHGREPTGRGGTELPRANDLGSLPEGWKEVKHAATGQICYVHAASGVKRWSRPTIAGDVTSDIQQTRQTHLEAARQAELAQTGAKGGKDGGGKKRGREEIDPLDPTGGRGSGGWTQGLGGGDRMADSTAGGSLWQQRPLPAPGAVLKKQGGGRGAGRGNQGQYPMRR
Sbjct:   80 VTDKGCMNVSVTERVLNRGTYSGAEAEELAIAAGGGLSVHKDNTLEILRERELGRQRQAKDAQKEANLKAKLLQQQENFRKEKATGKGDLEGQGSVERDSTPLPAGWEAVMDPQGSGDYYYWHAGTNVTTWERPSSQIPTAVPSGDTGVTTLKNHTSGSFLSSETSGGGEPGHGREPTGRGGTELPRANDLGSLPEGWKEVKHAATGQICYVHAASGVKRWSRPTIAGDVTSDIQQTRQTHLEAARQAELAQTGAKGGKDGGGKKRGREEIDPLDPTGGRGSGGWTQGLGGGDRMADSTAGGSLWQQRPLPAPGAVLKKQGGGRGAGRGNQGQYPMRR 417          
BLAST of EWM25653.1 vs. NCBI_GenBank
Match: gi|553178886|ref|XP_005852617.1| (growth arrest-specific 7, partial [Nannochloropsis gaditana CCMP526] >gi|422295917|gb|EKU23216.1| growth arrest-specific 7, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 312.768 bits (800), Expect = 1.440e-103
Identity = 150/152 (98.68%), Postives = 151/152 (99.34%), Query Frame = 0
Query:    9 KGCMNVSVTERVLNRGTYSGAEAEELAIAAGGGLSVHKDNTLEILRERELGRQRQAKDAQKEANLKAKLLQQQENFRKEKATGKGDLEGQGSVERDSTPLPAGWEAVMDPQGSGDYYYWHAGTNVTTWERPSSQIPTAVPSGDTGVTTLKNH 160
            KGCMNVSVTERVLNRGTYSGAEAEELAIAAGGGLSVHKDNTLEILRERELGRQRQAKDAQKEANLKAKLLQQQENFRKEKATGKGD+EGQGSVERDSTPLPAGWEAVMDPQGSGDYYYWHAGTNVTTWERPSSQIPTAVPSGDTGV TLKNH
Sbjct:   77 KGCMNVSVTERVLNRGTYSGAEAEELAIAAGGGLSVHKDNTLEILRERELGRQRQAKDAQKEANLKAKLLQQQENFRKEKATGKGDVEGQGSVERDSTPLPAGWEAVMDPQGSGDYYYWHAGTNVTTWERPSSQIPTAVPSGDTGVPTLKNH 228          
BLAST of EWM25653.1 vs. NCBI_GenBank
Match: gi|298710947|emb|CBJ32257.1| (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 104.76 bits (260), Expect = 1.330e-21
Identity = 88/241 (36.51%), Postives = 111/241 (46.06%), Query Frame = 0
Query:   97 GQGSVERDSTPLPAGWEAVMDPQGSGDYYYWHAGTNVTTWERPSSQIPTAVPSGDTGVTTLKNHTSGSFLSSETSGGGEPGHGREPTGRGGTELPRANDLGSLPEGWKEVKHAATGQICYVHAASGVKRWSRP-TIAGDVTSDIQQTRQTHLEAARQAELAQT----------GAKGGKDGGGKKRGR--EEIDPLDPTGGRGSGGWTQGLGG-GDRMADSTAGGSLWQQRPLPAPGAVLK 323
            G+G  +    PLPAGW+ + DP+ SG  Y+W+     TTW RP            TG  +  +   GS     ++ G                         LPEGWK V HAATGQ  YVH ASG + ++ P +   D +S   Q ++        A               G   G     KK+GR   EIDPLDPTG  G G W+ GL   G+RMADSTA G LWQQRP PAPG +L+
Sbjct:  192 GEGGGDSTPPPLPAGWKEIKDPK-SGGVYFWNKAKGATTWVRP------------TGPASGDSADGGSASGGGSTPG-------------------------LPEGWKAVTHAATGQTHYVHEASGKRSFTLPGSEPPDASSSSGQRQRGREGGGGHAGGGGGGAASSARGSEGRNRGDSNRPKKKGRGSWEIDPLDPTGKTG-GKWSDGLVQVGERMADSTASGPLWQQRPYPAPGKILR 393          
BLAST of EWM25653.1 vs. NCBI_GenBank
Match: gi|565368987|ref|XP_006351120.1| (PREDICTED: uncharacterized protein LOC102606319 [Solanum tuberosum] >gi|971557049|ref|XP_015165837.1| PREDICTED: uncharacterized protein LOC102606319 [Solanum tuberosum])

HSP 1 Score: 81.6481 bits (200), Expect = 2.305e-13
Identity = 71/232 (30.60%), Postives = 104/232 (44.83%), Query Frame = 0
Query:  108 LPAGWEAVMDPQGSGDYYYWHAGTNVTTWERPSSQIPTAVPSGDTGVTTLKNHTSGSFLSSETSGGGEPGHGREPTGRGGTELPRANDLGS----LPEGWKEVKHAA----TGQICYVHAASGVKRWSRPTIAGDVTSDIQQTRQTHLEAARQAELAQTGAKGGKDGGGKKRGRE--EIDPLDPTGGRGS--GGWTQGLGGGD-RMADSTAGGSLWQQRPLPAPGAVLKKQG 326
            LP  W+ V+D + SG  YY+++ TNV+ WE PS     A+   D  V    N T+ + +   ++                   PR ++ G     L + W   KH        Q  YV A   V+R  + +    VT D  +  Q      +++      +K  K    K+   E  E+DP+DP+    +  GGW  GL G   R AD+TA G L+QQRP P+PGAVL+K  
Sbjct:  294 LPEYWQEVLD-ESSGQKYYYNSQTNVSQWEHPSKPRQVAIQHHDRAVAN--NATNVTRVDQAST------------------FPRCSECGGWGVGLVQSWGYCKHCTRVLKLPQSQYVSA--NVERQQQTSGDAGVTEDTDKKFQR-----QRSSFKPPMSKSNKKDKRKRTNDEDDELDPMDPSSYSDAPRGGWVVGLKGVQPRAADTTATGPLFQQRPYPSPGAVLRKNA 497          
BLAST of EWM25653.1 vs. NCBI_GenBank
Match: gi|1150672096|ref|XP_020245206.1| (uncharacterized protein LOC109823090 [Asparagus officinalis] >gi|1142000892|gb|ONK81708.1| uncharacterized protein A4U43_C01F32070 [Asparagus officinalis])

HSP 1 Score: 78.5666 bits (192), Expect = 2.511e-12
Identity = 77/259 (29.73%), Postives = 113/259 (43.63%), Query Frame = 0
Query:   84 FRKEKATGKGDLE--GQGSVERDSTP---LPAGWEAVMDPQGSGDYYYWHAGTNVTTWERPS------SQIPTAVPSGDTGVTTLKNHTSGSFLSSETSGGGEPGHGREPTGRGGTELPRANDLGSLPEGWKEVKHAATGQICYVHAASGVKRWSRPTIAGDVTSDIQQTRQTH---LEAARQAELAQTGAKGGK-DGGGKKRGREEIDPLDPTGGRGS--GGWTQGLGGGD-RMADSTAGGSLWQQRPLPAPGAVLKK 324
            F  EK TG+   E  G+ +  + +TP   LP  WE  +D   +G  YY++  TNV+ WE PS      SQ    VP+G                    +G  EP + ++  G GG  +        L + W    H      C        +++S P   G        T + H   + + + +       KG K D   + +  +E+DP+DP+    +  GGW  GL G   R AD+TA G L+QQRP P+PGAVL+K
Sbjct:  406 FYNEK-TGQTQWEYPGETACSQQNTPSSSLPEDWEEAVD-DSTGQKYYYNTKTNVSQWELPSTTNQVISQHADCVPTG---------------YEFNITGNHEPSYKKKCMGCGGWGV-------GLVQAWGYCNH------CTRMLNLPYQQYSVPNFNGQEPKSFL-THKDHPGKMTSKQSSSSKPPLNKGNKRDSRKRHKDDDELDPMDPSSYSDAPRGGWVVGLKGVQPRAADTTATGPLFQQRPYPSPGAVLRK 633          
BLAST of EWM25653.1 vs. NCBI_GenBank
Match: gi|970059745|ref|XP_015056623.1| (PREDICTED: uncharacterized protein LOC107002929 [Solanum pennellii])

HSP 1 Score: 77.0258 bits (188), Expect = 6.712e-12
Identity = 70/230 (30.43%), Postives = 105/230 (45.65%), Query Frame = 0
Query:  108 LPAGWEAVMDPQGSGDYYYWHAGTNVTTWERPSSQIPTAVPSGDTGVTTLKNHTSGSFLSSETSGGGEPGHGREPTGRGGTELPRANDLGS----LPEGWKEVKHAA----TGQICYVHAASGVKRWSRPTIAGDVTSDIQQTRQTHLEAARQAELAQTGAKGGKDGGGKKRGRE--EIDPLDPTGGRGS--GGWTQGLGGGD-RMADSTAGGSLWQQRPLPAPGAVLKK 324
            LP  W+ V+D + +G  YY+++ TNV+ WE PS     A+   D  VT   N T+ +++   ++                    R  + G     L + W   KH        Q  YV A   V+R  + +    VT D ++  Q      +++      +K  K    K+   E  E+DP+DP+    +  GGW  GL G   R AD+TA G L+QQRP P+PGAVL+K
Sbjct:  290 LPEYWQEVLD-ESTGQKYYYNSQTNVSQWEHPSKPQHVAIQHHDGTVTN--NATNVTWVDQAST------------------FQRCIECGGWGVGLVQSWGYCKHCTRVLKLPQSQYVSA--NVERQQQTSGDAGVTEDSEKKFQR-----QRSSFKPPMSKSNKKDKRKRTNDEDDELDPMDPSSYSDAPRGGWVVGLKGVQPRAADTTATGPLFQQRPYPSPGAVLRK 491          
BLAST of EWM25653.1 vs. NCBI_GenBank
Match: gi|1083888883|ref|XP_018630685.1| (PREDICTED: uncharacterized protein LOC104109000 isoform X1 [Nicotiana tomentosiformis] >gi|1083888885|ref|XP_018630686.1| PREDICTED: uncharacterized protein LOC104109000 isoform X1 [Nicotiana tomentosiformis] >gi|1083888887|ref|XP_018630687.1| PREDICTED: uncharacterized protein LOC104109000 isoform X1 [Nicotiana tomentosiformis] >gi|1083888889|ref|XP_018630688.1| PREDICTED: uncharacterized protein LOC104109000 isoform X1 [Nicotiana tomentosiformis] >gi|1083888891|ref|XP_018630689.1| PREDICTED: uncharacterized protein LOC104109000 isoform X1 [Nicotiana tomentosiformis])

HSP 1 Score: 77.0258 bits (188), Expect = 7.492e-12
Identity = 72/235 (30.64%), Postives = 104/235 (44.26%), Query Frame = 0
Query:  108 LPAGWEAVMDPQGSGDYYYWHAGTNVTTWERPSSQIPTAVPSGDTGVTTLKNHTSGSFLSSETSGGGEPGHGREPTGRGGTELPRANDLGS----LPEGWKEVKHAA----TGQICYVHAASGVKRWSRPTIAGDVTSDIQQTRQTHLEAARQAELAQTGAKGGKDGGGKKRGR-----EEIDPLDPTGGRGS--GGWTQGLGGGD-RMADSTAGGSLWQQRPLPAPGAVLKKQG 326
            LP  W+ V D + +G  YY+++ TNV+ WE PS   P  VP        + N T+ ++                  G   +   R  + G     L + W   KH        Q  Y+ A   V+R  + +     T D ++ R  HL+  R +     G    KD    KR R     +E+DP+DP+    +  GGW  GL G   R AD+TA G L+QQRP P+PGAVL++  
Sbjct:  320 LPEFWQEVFD-ESTGQKYYYNSKTNVSQWEHPSK--PQQVPMQHHDRAVVSNATNITW------------------GDQDSTFRRCIECGGWGVGLVQSWGYCKHCTRVLKLPQSHYLSA--NVERQQQISGYAGATEDTEK-RFDHLDC-RSSSKPPMGKSNKKD----KRKRTYDEDDELDPMDPSSYSDAPRGGWVVGLKGVQPRAADTTATGPLFQQRPYPSPGAVLRRNA 525          
BLAST of EWM25653.1 vs. NCBI_GenBank
Match: gi|357126488|ref|XP_003564919.1| (PREDICTED: uncharacterized protein LOC100840198 [Brachypodium distachyon] >gi|944075703|gb|KQK11187.1| hypothetical protein BRADI_2g58667 [Brachypodium distachyon])

HSP 1 Score: 76.6406 bits (187), Expect = 8.782e-12
Identity = 83/317 (26.18%), Postives = 126/317 (39.75%), Query Frame = 0
Query:   47 DNTLEILRERELGR-------------QRQAKDAQKEANLKAKLLQQQENFRKEKATGKGDLEGQGS--------------VERDSTP-LPAGWEAVMDPQGSGDYYYWHAGTNVTTWERPSSQIPTAVPSGDTGVTTLKNHTSGSFLSSETSGGGEPGHGREPTGRGGTELPRANDLGSLPEGWKEVKHAATGQIC----YVHAASGVKRWS---RPTIAGDVTSDIQQTRQTHLEAARQAELAQTGAKGGKDGGGKKRGR-EEIDPLDPTGGRGS--GGWTQGLGG-GDRMADSTAGGSLWQQRPLPAPGAVLKK 324
            D+  E L++R   R              +Q  D+Q+  N+ A+ L       K+  TG      Q +              V+  + P LP  WE  +D + +G  YY++  T+ T WE P+S  P  VP   T V       +    +          H +  +G GG  +        L + W    H    Q      Y   ++ + + S    P I G+V +             R +    +G    KD   +     +E+DP+DP+    +  GGW  GL G   R AD+TA G L+QQRP P+PGAVL+K
Sbjct:  246 DDLPEFLKQRLKARGILKDKAANDNSAAKQKADSQEGHNISAQELPPGWVEAKDPTTGASYFYNQSTGVTQWDRPGGAVNPVQHQAAPSLPENWEEALD-KSTGQKYYYNTKTHATQWEPPTSVQPGVVPHASTDVAVQPTAQNADLCNP---------HMQRCSGCGGWGI-------GLVQPWGYCNHCTRVQNLPFQQYPSYSNNIVQSSGTNAPKIQGNVAT-----------KDRSSTKPPSGKANKKDNRKRNHAEDDELDPMDPSSYSDAPRGGWVVGLKGVQPRAADTTASGPLFQQRPYPSPGAVLRK 534          
BLAST of EWM25653.1 vs. NCBI_GenBank
Match: gi|1104639231|ref|XP_019066424.1| (PREDICTED: uncharacterized protein LOC101257622 [Solanum lycopersicum])

HSP 1 Score: 76.6406 bits (187), Expect = 9.213e-12
Identity = 70/230 (30.43%), Postives = 105/230 (45.65%), Query Frame = 0
Query:  108 LPAGWEAVMDPQGSGDYYYWHAGTNVTTWERPSSQIPTAVPSGDTGVTTLKNHTSGSFLSSETSGGGEPGHGREPTGRGGTELPRANDLGS----LPEGWKEVKHAA----TGQICYVHAASGVKRWSRPTIAGDVTSDIQQTRQTHLEAARQAELAQTGAKGGKDGGGKKRGRE--EIDPLDPTGGRGS--GGWTQGLGGGD-RMADSTAGGSLWQQRPLPAPGAVLKK 324
            LP  W+ V+D + +G  YY+++ TNV+ WE PS     A+   D  VT   N T+ +++   ++                    R  + G     L + W   KH        Q  YV A   V+R  + +    VT D ++  Q      +++      +K  K    K+   E  E+DP+DP+    +  GGW  GL G   R AD+TA G L+QQRP P+PGAVL+K
Sbjct:  306 LPEYWQEVLD-ESTGQKYYYNSQTNVSQWEHPSKPQQVAIQHHDGTVTN--NATNVTWVDQAST------------------FQRCIECGGWGVGLVQSWGYCKHCTRVLNLPQSQYVSA--NVERQQQTSGDAGVTEDSEKKFQR-----QRSSFKPPMSKSNKKDKRKRTNDEDDELDPMDPSSYSDAPRGGWVVGLKGVQPRAADTTATGPLFQQRPYPSPGAVLRK 507          
The following BLAST results are available for this feature:
BLAST of EWM25653.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585107482|gb|EWM25653.1|0.000e+0100.00ubiquitin-protein ligase [Nannochloropsis gaditana... [more]
gi|585107481|gb|EWM25652.1|0.000e+099.11ubiquitin-protein ligase [Nannochloropsis gaditana... [more]
gi|553178886|ref|XP_005852617.1|1.440e-10398.68growth arrest-specific 7, partial [Nannochloropsis... [more]
gi|298710947|emb|CBJ32257.1|1.330e-2136.51conserved unknown protein [Ectocarpus siliculosus][more]
gi|565368987|ref|XP_006351120.1|2.305e-1330.60PREDICTED: uncharacterized protein LOC102606319 [S... [more]
gi|1150672096|ref|XP_020245206.1|2.511e-1229.73uncharacterized protein LOC109823090 [Asparagus of... [more]
gi|970059745|ref|XP_015056623.1|6.712e-1230.43PREDICTED: uncharacterized protein LOC107002929 [S... [more]
gi|1083888883|ref|XP_018630685.1|7.492e-1230.64PREDICTED: uncharacterized protein LOC104109000 is... [more]
gi|357126488|ref|XP_003564919.1|8.782e-1226.18PREDICTED: uncharacterized protein LOC100840198 [B... [more]
gi|1104639231|ref|XP_019066424.1|9.213e-1230.43PREDICTED: uncharacterized protein LOC101257622 [S... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna5032rna5032Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications