rna5031, rna5031 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna5031
Unique Name	rna5031
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1239
Alignment location	CM002464.1:967276..969133 -

Link to JBrowse

Properties


Property Name	Value
Product	ubiquitin-protein ligase
Orig transcript id	gnl\|cribi\|Naga_100500g2.3104.mrna
Orig protein id	gnl\|cribi\|Naga_100500g2.3104
Gbkey	mRNA
Note	encoded by transcript variant 1; alternatively spliced

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002464.1	supercontig	CM002464.1:967276..969133 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100500g2	gene4859	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna5031	rna5031-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM25652.1	cds5019	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002464.1:967276..969133-
coding sequence from alignment at CM002464.1:967276..969133-

mRNA sequence

>rna5031 ID=rna5031|Name=rna5031|organism=Nannochloropsis gaditana|type=mRNA|length=1239bp
CTTGTGTCTGAAAAATAAGGCCCTTAGAAGTCTCCTTCTTCAGCTTGAAG
GACGGCATCGGCCGTCGCTTGTAGGCTAGCGGAATGTCCCTATCGCCCTG
TCTATGGCACCAGCTCAAGTACCGTTTCCTTTCTCCCTGGTCAGACAAAC
AGCGCTTCAGTTACAGGATGAGAACATCCTTACTCGTAGGTGCACTTGGT
GCAGCGATACTTTCCCTTCTATCCCTCTCCCTGTCCGCTGCCATGAACCT
TGAAACATCTGCGGCGTCCCTTGGCGGGTATCAACGCCAAATTTATCAAT
ATTTTGACAACGTACGACAAGGCGACCGTGGGCAATATGGAGCTGCCAAT
GGTGCTCGTGCATGCGAACGCTTTGTGCGTGACAAGGCAATGCAGACTGA
TTTGGCGGAGGTTATCTCTGGGTTTTACAACAACGACGTCGCCGCCATGT
TTGCCTAGCAACGGACCGAAAAATTAAAAAAGATGATGGATGATGGATGG
CGGCGAGATTGAGAAAGCAGGAAATCGCGAGCATTGGTCCGCACAACACA
CCACTGCTTCTGTGACCGAATCGAGTCAGGAAGGTCTGAGCAAGCGGAGC
AAGAATTTTCCCTTCCAAATTTTTCTTTAAGAACTTTGGAGTGATTTGTA
CAACCTCAGCGGAAGCATTACGCAAGGGCATTTCATCATGAAATGTCTCG
TTCCTACACAAAAAACAAGGGCAAGAACATGAACAACAAACAAAACGGAG
ATATACTCTGGAAAAGAGACCAAAACCCGTGACGGATGAGAATCAAAATC
AATGCAATCAAAAAACGCAGGAGTCGGTGCTGGTACTACTTGGTGACATT
ATCTCATACGGTGCAGCGAACAAGGCGTGAAAAAAATAGCATATTTGCAG
GAAATAGGTGAATTTGTCCATCCATGCAGCTGATCTCTCCTCAGCAAAAT
TAGGTACATTCTTCTAGTCTAAAATTTATGAATTGGAAATGGTGACGTGT
ATAACTCTTCGCAGAAGTCTGCTTGTGTATTTAGAGGAAAGAAAGGTTCG
GATGGAAGGAGTGAGACGCCTGAACTAGAAAATCAAAATTAACGGAAACT
CATACAGTTGTCGAATAGCACTTCGTTCCCTTCTGTCACATTGAAATGAT
ATTGCATGGAGATGCCACGGAATCGATATGGCGCGTATGCCGTTACCGAA
CCTTCGGTCCCACGACCTTGCCACGACCCATCCTCAAAT

protein sequence of rna5031

>rna5031-protein ID=rna5031-protein|Name=rna5031|organism=Nannochloropsis gaditana|type=polypeptide|length=417bp
MLHIPPRNAGLWFDLFTTPASSLSAVATESQPPSLPLPADTQTTVLDSAM
ASQQRALLQGDRLAKELAAQQARAAARAYVTDKGCMNVSVTERVLNRGTY
SGAEAEELAIAAGGGLSVHKDNTLEILRERELGRQRQAKDAQKEANLKAK
LLQQQENFRKEKATGKGDLEGQGSVERDSTPLPAGWEAVMDPQGSGDYYY
WHAGTNVTTWERPSSQIPTAVPSGDTGVTTLKNHTSGSFLSSETSGGGEP
GHGREPTGRGGTELPRANDLGSLPEGWKEVKHAATGQICYVHAASGVKRW
SRPTIAGDVTSDIQQTRQTHLEAARQAELAQTGAKGGKDGGGKKRGREEI
DPLDPTGGRGSGGWTQGLGGGDRMADSTAGGSLWQQRPLPAPGAVLKKQG
GGRGAGRGNQGQYPMRR

mRNA from alignment at CM002464.1:967276..969133-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna5031 ID=rna5031|Name=rna5031|organism=Nannochloropsis gaditana|type=mRNA|length=1858bp|location=Sequence derived from alignment at CM002464.1:967276..969133- (Nannochloropsis gaditana)
GCGGTCTGAAAAATTAAGTTCATATGACGCCTGAACGTGTTAAGCTCTCG
ACTGGCCCCGCGTTTCCAGGAACTGAATCGCGACGCTAATGCTACATATC
CCACCTAGAAACGCAGGCTTGTGGTTTGATTTATTTACAACGCCGGCTTC
GTCTCTCTCAGCCGTCGCCACGGAGAGTCAACCTCCCTCCTTGCCCCTGC
CCGCTGACACTCAAACCACTGTGCTGGACTCTGCCATGGCCAGTCAACAA
CGTGCTCTCCTCCAAGGAGATCGTCTGGCGAAAGAGCTTGCGGCACAGCA
AGCAAGGGCGGCTGCCAGGGCGTACGTGACCGATAAAGGTAGGCGCCTCT
GGAATATTGGGATTTTATGTAACATAGTACGTGCCTCCCTCCCTTATCCA
CACGTTAAACGCGCAGCAACGTGTTCCGCATGGAGTTAGTACCTATACCA
CTTGATTTCTTTGCCCCAGTCTCCTTTTCAAAACCTGCTCGGCAGAGGAG
ACCTTGAAAAAGTCTGATCTTCCTCACTCCCCATGTATAATTCGTCCTTT
GCTTCAAAAGGGTGCATGAACGTCTCTGTCACTGAGAGGGTCCTCAATAG
AGGCACCTACTCCGGCGCTGAGGCGGAAGAATTGGCCATCGCTGCCGGAG
GGGGCCTGTCAGTGCACAAGGACAACACACTCGAAATCCTTCGGGAGCGA
GAGCTTGGGAGGCAGAGGCAAGCAAAAGACGCGCAGAAGGAGGCAAATTT
AAAAGCAAAACTTCTCCAGCAACAAGAGAATTTTCGAAAAGAAAAAGCGA
CGGGCAAGGGGGACTTGGAAGGCCAAGGGAGCGTGGAGAGAGACTCGACT
CCCCTCCCCGCAGGGTGGGAAGCCGTCATGGACCCTCAGGGCTCCGGCGA
CTACTATTACTGGCACGCGGGTACGAATGTGACCACGTGGGAACGCCCTT
CCTCCCAAATTCCGACGGCTGTACCGTCAGGGGACACGGGTGTTACGACT
CTGAAAAACCACACTTCGGGTAGCTTTCTTTCCTCGGAAACTTCAGGAGG
CGGGGAACCAGGACACGGGAGAGAACCGACCGGGCGGGGAGGCACCGAAC
TTCCCCGGGCAAATGACCTTGGGAGCTTGCCAGAGGGGTGGAAGGAGGTC
AAGCACGCAGCGACGGGACAGATCTGTTATGTCCACGCGGCTAGCGGGGT
GAAACGCTGGTCCCGTCCAACAATTGCAGGCGACGTGACGTCTGACATAC
AGCAAACTCGACAAACCCATCTGGAAGCCGCTCGGCAGGCAGAGCTGGCG
CAAACGGGGGCAAAGGGAGGAAAAGATGGGGGAGGGAAGAAGAGGGGACG
GGAGGAAATCGACCCGTTGGATCCCACTGGAGGGAGAGGAAGTGGCGGGT
GGACCCAAGGATTGGGCGGTGGGGATAGAATGGCCGATAGCACCGCTGGC
GGCAGTCTATGGCAACAACGACCTTTGCCAGCACCAGGAGCAGTGTTGAA
AAAGCAAGGAGGCGGTAGGGGGGCAGGACGAGGAAACCAGGGCCAATATC
CCATGCGGCGGTGAGAAAAGCGCATGGTGAGGACTGAAAATCTGTTCACA
CATCCGAGGGGCTAGTAAGATGAAGAGGGAAGGATTATCTGTGCGTCAGA
ATGATTTGAAGGCAGTGTATGATGAGAAAAAATGGCACGAATAACAATTT
TGGTAGGGTAAAAGGAAAAGTTGAACCGCATAATTTTCATATGCCTCAGC
ACATTGTTTGATAACTTTTCGCAGACACCTCTTTGCGATGGTACCTGTGT
CGAAACTGCTATCGCGGTTCCAACAACTATAGAGGAAGAGTCTGTGGATG
GAAATATC

Coding sequence (CDS) from alignment at CM002464.1:967276..969133-

>rna5031 ID=rna5031|Name=rna5031|organism=Nannochloropsis gaditana|type=CDS|length=2508bp|location=Sequence derived from alignment at CM002464.1:967276..969133- (Nannochloropsis gaditana)
GGTGCATGAACGTCTCTGTCACTGAGAGGGTCCTCAATAGAGGCACCTAC
TCCGGCGCTGAGGCGGAAGAATTGGCCATCGCTGCCGGAGGGGGCCTGTC
AGTGCACAAGGACAACACACTCGAAATCCTTCGGGAGCGAGAGCTTGGGA
GGCAGAGGCAAGCAAAAGACGCGCAGAAGGAGGCAAATTTAAAAGCAAAA
CTTCTCCAGCAACAAGAGAATTTTCGAAAAGAAAAAGCGACGGGCAAGGG
GGACTTGGAAGGCCAAGGGAGCGTGGAGAGAGACTCGACTCCCCTCCCCG
CAGGGTGGGAAGCCGTCATGGACCCTCAGGGCTCCGGCGACTACTATTAC
TGGCACGCGGGTACGAATGTGACCACGTGGGAACGCCCTTCCTCCCAAAT
TCCGACGGCTGTACCGTCAGGGGACACGGGTGTTACGACTCTGAAAAACC
ACACTTCGGGTAGCTTTCTTTCCTCGGAAACTTCAGGAGGCGGGGAACCA
GGACACGGGAGAGAACCGACCGGGCGGGGAGGCACCGAACTTCCCCGGGC
AAATGACCTTGGGAGCTTGCCAGAGGGGTGGAAGGAGGTCAAGCACGCAG
CGACGGGACAGATCTGTTATGTCCACGCGGCTAGCGGGGTGAAACGCTGG
TCCCGTCCAACAATTGCAGGCGACGTGACGTCTGACATACAGCAAACTCG
ACAAACCCATCTGGAAGCCGCTCGGCAGGCAGAGCTGGCGCAAACGGGGG
CAAAGGGAGGAAAAGATGGGGGAGGGAAGAAGAGGGGACGGGAGGAAATC
GACCCGTTGGATCCCACTGGAGGGAGAGGAAGTGGCGGGTGGACCCAAGG
ATTGGGCGGTGGGGATAGAATGGCCGATAGCACCGCTGGCGGCAGTCTAT
GGCAACAACGACCTTTGCCAGCACCAGGAGCAGTGTTGAAAAAGCAAGGA
GGCGGTAGGGGGGCAGGACGAGGAAACCAGGGCCAATATCCCATGCGGCG
GTGAATGCTACATATCCCACCTAGAAACGCAGGCTTGTGGTTTGATTTAT
TTACAACGCCGGCTTCGTCTCTCTCAGCCGTCGCCACGGAGAGTCAACCT
CCCTCCTTGCCCCTGCCCGCTGACACTCAAACCACTGTGCTGGACTCTGC
CATGGCCAGTCAACAACGTGCTCTCCTCCAAGGAGATCGTCTGGCGAAAG
AGCTTGCGGCACAGCAAGCAAGGGCGGCTGCCAGGGCGTACGTGACCGAT
AAAGGGTGCATGAACGTCTCTGTCACTGAGAGGGTCCTCAATAGAGGCAC
CTACTCCGGCGCTGAGGCGGAAGAATTGGCCATCGCTGCCGGAGGGGGCC
TGTCAGTGCACAAGGACAACACACTCGAAATCCTTCGGGAGCGAGAGCTT
GGGAGGCAGAGGCAAGCAAAAGACGCGCAGAAGGAGGCAAATTTAAAAGC
AAAACTTCTCCAGCAACAAGAGAATTTTCGAAAAGAAAAAGCGACGGGCA
AGGGGGACTTGGAAGGCCAAGGGAGCGTGGAGAGAGACTCGACTCCCCTC
CCCGCAGGGTGGGAAGCCGTCATGGACCCTCAGGGCTCCGGCGACTACTA
TTACTGGCACGCGGGTACGAATGTGACCACGTGGGAACGCCCTTCCTCCC
AAATTCCGACGGCTGTACCGTCAGGGGACACGGGTGTTACGACTCTGAAA
AACCACACTTCGGGTAGCTTTCTTTCCTCGGAAACTTCAGGAGGCGGGGA
ACCAGGACACGGGAGAGAACCGACCGGGCGGGGAGGCACCGAACTTCCCC
GGGCAAATGACCTTGGGAGCTTGCCAGAGGGGTGGAAGGAGGTCAAGCAC
GCAGCGACGGGACAGATCTGTTATGTCCACGCGGCTAGCGGGGTGAAACG
CTGGTCCCGTCCAACAATTGCAGGCGACGTGACGTCTGACATACAGCAAA
CTCGACAAACCCATCTGGAAGCCGCTCGGCAGGCAGAGCTGGCGCAAACG
GGGGCAAAGGGAGGAAAAGATGGGGGAGGGAAGAAGAGGGGACGGGAGGA
AATCGACCCGTTGGATCCCACTGGAGGGAGAGGAAGTGGCGGGTGGACCC
AAGGATTGGGCGGTGGGGATAGAATGGCCGATAGCACCGCTGGCGGCAGT
CTATGGCAACAACGACCTTTGCCAGCACCAGGAGCAGTGTTGAAAAAGCA
AGGAGGCGGTAGGGGGGCAGGACGAGGAAACCAGGGCCAATATCCCATGC
GGCGGTGAATGCTACATATCCCACCTAGAAACGCAGGCTTGTGGTTTGAT
TTATTTACAACGCCGGCTTCGTCTCTCTCAGCCGTCGCCACGGAGAGTCA
ACCTCCCTCCTTGCCCCTGCCCGCTGACACTCAAACCACTGTGCTGGACT
CTGCCATGGCCAGTCAACAACGTGCTCTCCTCCAAGGAGATCGTCTGGCG
AAAGAGCTTGCGGCACAGCAAGCAAGGGCGGCTGCCAGGGCGTACGTGAC
CGATAAAG

Synonyms

Publications