EWM25652.1, cds5019 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM25652.1 vs. NCBI_GenBank
Match: gi|585107481|gb|EWM25652.1| (ubiquitin-protein ligase [Nannochloropsis gaditana]) HSP 1 Score: 839.721 bits (2168), Expect = 0.000e+0 Identity = 417/417 (100.00%), Postives = 417/417 (100.00%), Query Frame = 0
Query: 1 MLHIPPRNAGLWFDLFTTPASSLSAVATESQPPSLPLPADTQTTVLDSAMASQQRALLQGDRLAKELAAQQARAAARAYVTDKGCMNVSVTERVLNRGTYSGAEAEELAIAAGGGLSVHKDNTLEILRERELGRQRQAKDAQKEANLKAKLLQQQENFRKEKATGKGDLEGQGSVERDSTPLPAGWEAVMDPQGSGDYYYWHAGTNVTTWERPSSQIPTAVPSGDTGVTTLKNHTSGSFLSSETSGGGEPGHGREPTGRGGTELPRANDLGSLPEGWKEVKHAATGQICYVHAASGVKRWSRPTIAGDVTSDIQQTRQTHLEAARQAELAQTGAKGGKDGGGKKRGREEIDPLDPTGGRGSGGWTQGLGGGDRMADSTAGGSLWQQRPLPAPGAVLKKQGGGRGAGRGNQGQYPMRR 417
MLHIPPRNAGLWFDLFTTPASSLSAVATESQPPSLPLPADTQTTVLDSAMASQQRALLQGDRLAKELAAQQARAAARAYVTDKGCMNVSVTERVLNRGTYSGAEAEELAIAAGGGLSVHKDNTLEILRERELGRQRQAKDAQKEANLKAKLLQQQENFRKEKATGKGDLEGQGSVERDSTPLPAGWEAVMDPQGSGDYYYWHAGTNVTTWERPSSQIPTAVPSGDTGVTTLKNHTSGSFLSSETSGGGEPGHGREPTGRGGTELPRANDLGSLPEGWKEVKHAATGQICYVHAASGVKRWSRPTIAGDVTSDIQQTRQTHLEAARQAELAQTGAKGGKDGGGKKRGREEIDPLDPTGGRGSGGWTQGLGGGDRMADSTAGGSLWQQRPLPAPGAVLKKQGGGRGAGRGNQGQYPMRR
Sbjct: 1 MLHIPPRNAGLWFDLFTTPASSLSAVATESQPPSLPLPADTQTTVLDSAMASQQRALLQGDRLAKELAAQQARAAARAYVTDKGCMNVSVTERVLNRGTYSGAEAEELAIAAGGGLSVHKDNTLEILRERELGRQRQAKDAQKEANLKAKLLQQQENFRKEKATGKGDLEGQGSVERDSTPLPAGWEAVMDPQGSGDYYYWHAGTNVTTWERPSSQIPTAVPSGDTGVTTLKNHTSGSFLSSETSGGGEPGHGREPTGRGGTELPRANDLGSLPEGWKEVKHAATGQICYVHAASGVKRWSRPTIAGDVTSDIQQTRQTHLEAARQAELAQTGAKGGKDGGGKKRGREEIDPLDPTGGRGSGGWTQGLGGGDRMADSTAGGSLWQQRPLPAPGAVLKKQGGGRGAGRGNQGQYPMRR 417
BLAST of EWM25652.1 vs. NCBI_GenBank
Match: gi|585107482|gb|EWM25653.1| (ubiquitin-protein ligase [Nannochloropsis gaditana]) HSP 1 Score: 676.781 bits (1745), Expect = 0.000e+0 Identity = 335/338 (99.11%), Postives = 335/338 (99.11%), Query Frame = 0
Query: 80 VTDKGCMNVSVTERVLNRGTYSGAEAEELAIAAGGGLSVHKDNTLEILRERELGRQRQAKDAQKEANLKAKLLQQQENFRKEKATGKGDLEGQGSVERDSTPLPAGWEAVMDPQGSGDYYYWHAGTNVTTWERPSSQIPTAVPSGDTGVTTLKNHTSGSFLSSETSGGGEPGHGREPTGRGGTELPRANDLGSLPEGWKEVKHAATGQICYVHAASGVKRWSRPTIAGDVTSDIQQTRQTHLEAARQAELAQTGAKGGKDGGGKKRGREEIDPLDPTGGRGSGGWTQGLGGGDRMADSTAGGSLWQQRPLPAPGAVLKKQGGGRGAGRGNQGQYPMRR 417
KGCMNVSVTERVLNRGTYSGAEAEELAIAAGGGLSVHKDNTLEILRERELGRQRQAKDAQKEANLKAKLLQQQENFRKEKATGKGDLEGQGSVERDSTPLPAGWEAVMDPQGSGDYYYWHAGTNVTTWERPSSQIPTAVPSGDTGVTTLKNHTSGSFLSSETSGGGEPGHGREPTGRGGTELPRANDLGSLPEGWKEVKHAATGQICYVHAASGVKRWSRPTIAGDVTSDIQQTRQTHLEAARQAELAQTGAKGGKDGGGKKRGREEIDPLDPTGGRGSGGWTQGLGGGDRMADSTAGGSLWQQRPLPAPGAVLKKQGGGRGAGRGNQGQYPMRR
Sbjct: 6 FASKGCMNVSVTERVLNRGTYSGAEAEELAIAAGGGLSVHKDNTLEILRERELGRQRQAKDAQKEANLKAKLLQQQENFRKEKATGKGDLEGQGSVERDSTPLPAGWEAVMDPQGSGDYYYWHAGTNVTTWERPSSQIPTAVPSGDTGVTTLKNHTSGSFLSSETSGGGEPGHGREPTGRGGTELPRANDLGSLPEGWKEVKHAATGQICYVHAASGVKRWSRPTIAGDVTSDIQQTRQTHLEAARQAELAQTGAKGGKDGGGKKRGREEIDPLDPTGGRGSGGWTQGLGGGDRMADSTAGGSLWQQRPLPAPGAVLKKQGGGRGAGRGNQGQYPMRR 343
BLAST of EWM25652.1 vs. NCBI_GenBank
Match: gi|553178886|ref|XP_005852617.1| (growth arrest-specific 7, partial [Nannochloropsis gaditana CCMP526] >gi|422295917|gb|EKU23216.1| growth arrest-specific 7, partial [Nannochloropsis gaditana CCMP526]) HSP 1 Score: 459.914 bits (1182), Expect = 1.685e-160 Identity = 226/228 (99.12%), Postives = 227/228 (99.56%), Query Frame = 0
Query: 7 RNAGLWFDLFTTPASSLSAVATESQPPSLPLPADTQTTVLDSAMASQQRALLQGDRLAKELAAQQARAAARAYVTDKGCMNVSVTERVLNRGTYSGAEAEELAIAAGGGLSVHKDNTLEILRERELGRQRQAKDAQKEANLKAKLLQQQENFRKEKATGKGDLEGQGSVERDSTPLPAGWEAVMDPQGSGDYYYWHAGTNVTTWERPSSQIPTAVPSGDTGVTTLKNH 234
RNAGLWFDLFTTPASSLSAVATESQPPSLPLPADTQTTVLDSAMASQQRALLQGDRLAKELAAQQARAAARAYVTDKGCMNVSVTERVLNRGTYSGAEAEELAIAAGGGLSVHKDNTLEILRERELGRQRQAKDAQKEANLKAKLLQQQENFRKEKATGKGD+EGQGSVERDSTPLPAGWEAVMDPQGSGDYYYWHAGTNVTTWERPSSQIPTAVPSGDTGV TLKNH
Sbjct: 1 RNAGLWFDLFTTPASSLSAVATESQPPSLPLPADTQTTVLDSAMASQQRALLQGDRLAKELAAQQARAAARAYVTDKGCMNVSVTERVLNRGTYSGAEAEELAIAAGGGLSVHKDNTLEILRERELGRQRQAKDAQKEANLKAKLLQQQENFRKEKATGKGDVEGQGSVERDSTPLPAGWEAVMDPQGSGDYYYWHAGTNVTTWERPSSQIPTAVPSGDTGVPTLKNH 228
BLAST of EWM25652.1 vs. NCBI_GenBank
Match: gi|298710947|emb|CBJ32257.1| (conserved unknown protein [Ectocarpus siliculosus]) HSP 1 Score: 105.145 bits (261), Expect = 3.282e-21 Identity = 88/241 (36.51%), Postives = 109/241 (45.23%), Query Frame = 0
Query: 171 GQGSVERDSTPLPAGWEAVMDPQGSGDYYYWHAGTNVTTWERPSSQIPTAVPSGDTGVTTLKNHTSGSFLSSETSGGGEPGHGREPTGRGGTELPRANDLGSLPEGWKEVKHAATGQICYVHAASGVKRWSRP-TIAGDVTSD----------IQQTRQTHLEAARQAELAQTGAKGGKDGGGKKRGR--EEIDPLDPTGGRGSGGWTQGLGG-GDRMADSTAGGSLWQQRPLPAPGAVLK 397
G+G + PLPAGW+ + DP+ SG Y+W+ TTW RP+ P + S D G + T G LPEGWK V HAATGQ YVH ASG + ++ P + D +S A + G G KK+GR EIDPLDPTG G G W+ GL G+RMADSTA G LWQQRP PAPG +L+
Sbjct: 192 GEGGGDSTPPPLPAGWKEIKDPK-SGGVYFWNKAKGATTWVRPTG--PASGDSADGGSASGGGSTPG-----------------------------------LPEGWKAVTHAATGQTHYVHEASGKRSFTLPGSEPPDASSSSGQRQRGREGGGGHAGGGGGGAASSARGSEGRNRGDSNRPKKKGRGSWEIDPLDPTGKTG-GKWSDGLVQVGERMADSTASGPLWQQRPYPAPGKILR 393
BLAST of EWM25652.1 vs. NCBI_GenBank
Match: gi|567977414|gb|ETL27916.1| (hypothetical protein L916_18625 [Phytophthora parasitica] >gi|570938764|gb|ETP04021.1| hypothetical protein F441_19117 [Phytophthora parasitica CJ01A1]) HSP 1 Score: 80.8777 bits (198), Expect = 2.419e-13 Identity = 95/357 (26.61%), Postives = 135/357 (37.82%), Query Frame = 0
Query: 58 LQGDRLAKELAAQQARAAARAYVTDKGCMNVSVTERVLNRGTYSGAEAEELAIAAGGGLSVHKDNTLEILRERELGRQRQAKDAQK------EANLKAKLLQQQENFRK----EKATGKGDLEGQGSVERDSTPLPAGWEAVMDPQGSGDYYYWHAGTNVTTWERPSSQIPTAVPSGDTGVTTLKNHTSGSFLSSETSGGGEPGHGREPTGRGGTELPRANDLGSLPEGWKEVKHAATGQICYVHAASGVKRWSRPT-------------------------------IAGDVTSDIQ-QTRQTHLEAARQAELAQTGA--KGGKDGGGKKRGREE--IDPLDPTGGRGSGGWTQGL 368
+ DRL KELAAQ+ARA A Y+ G SG ELA + T + + R +G Q + A K + L A L++ + +K E+ LE + + E+ S LP GW+ V+DP SGD YYW+ TN T WERP S V + + T SL +GW+EV AA+G + Y + + W+RP + + SD + + QT R A Q A +G +D K+R R++ IDP+DPTG G W+ GL
Sbjct: 7 VAADRLKKELAAQKARAEALKYLHSTG----------------SGPSQRELAQQQQLRQKQTANATSAVAQRRVIGAQPEPSAADKFDPRVRDNTLHAVALRRAQELQKTHQIEQKVESYRLESKTTTEQ-SNALPPGWQEVVDP-ASGDSYYWNETTNETVWERPGSSAVKKVETAEPKTTA----------------------------------------DSLADGWEEVPDAASGDVYYWNRKTNETTWTRPVARSVSLAQAIEAKAKLDSILKGCGHSVAKTKTSTNSASDAKPNSDQTTSAKKRPASRTQNNAISQGHRD---KRRKRDDGVIDPMDPTG--TGGKWSDGL 300
BLAST of EWM25652.1 vs. NCBI_GenBank
Match: gi|568036762|gb|ETM34364.1| (hypothetical protein L914_18535 [Phytophthora parasitica]) HSP 1 Score: 80.4925 bits (197), Expect = 2.658e-13 Identity = 95/357 (26.61%), Postives = 135/357 (37.82%), Query Frame = 0
Query: 58 LQGDRLAKELAAQQARAAARAYVTDKGCMNVSVTERVLNRGTYSGAEAEELAIAAGGGLSVHKDNTLEILRERELGRQRQAKDAQK------EANLKAKLLQQQENFRK----EKATGKGDLEGQGSVERDSTPLPAGWEAVMDPQGSGDYYYWHAGTNVTTWERPSSQIPTAVPSGDTGVTTLKNHTSGSFLSSETSGGGEPGHGREPTGRGGTELPRANDLGSLPEGWKEVKHAATGQICYVHAASGVKRWSRPT-------------------------------IAGDVTSDIQ-QTRQTHLEAARQAELAQTGA--KGGKDGGGKKRGREE--IDPLDPTGGRGSGGWTQGL 368
+ DRL KELAAQ+ARA A Y+ G SG ELA + T + + R +G Q + A K + L A L++ + +K E+ LE + + E+ S LP GW+ V+DP SGD YYW+ TN T WERP S V + + T SL +GW+EV AA+G + Y + + W+RP + + SD + + QT R A Q A +G +D K+R R++ IDP+DPTG G W+ GL
Sbjct: 7 VAADRLKKELAAQKARAEALKYLHSTG----------------SGPSQRELAQQQQLRQKQTANATSAVAQRRVIGAQPKPSAADKFDPRVRDNTLHAVALRRAQELQKTHQIEQKVESYRLESKTTTEQ-SNALPPGWQEVVDP-ASGDSYYWNETTNETVWERPGSSAVKKVETAEPKTTA----------------------------------------DSLADGWEEVPDAASGDVYYWNRKTNETTWTRPVARSVSLAQAIEAKAKLDSILKGCGLSVTKTKTSTNSASDAKPNSDQTTSAKKRPASRTQNNAISQGHRD---KRRKRDDGVIDPMDPTG--TGGKWSDGL 300
BLAST of EWM25652.1 vs. NCBI_GenBank
Match: gi|570314983|gb|ETO62931.1| (hypothetical protein F444_19247 [Phytophthora parasitica P1976]) HSP 1 Score: 80.1073 bits (196), Expect = 3.597e-13 Identity = 95/357 (26.61%), Postives = 135/357 (37.82%), Query Frame = 0
Query: 58 LQGDRLAKELAAQQARAAARAYVTDKGCMNVSVTERVLNRGTYSGAEAEELAIAAGGGLSVHKDNTLEILRERELGRQRQAKDAQK------EANLKAKLLQQQENFRK----EKATGKGDLEGQGSVERDSTPLPAGWEAVMDPQGSGDYYYWHAGTNVTTWERPSSQIPTAVPSGDTGVTTLKNHTSGSFLSSETSGGGEPGHGREPTGRGGTELPRANDLGSLPEGWKEVKHAATGQICYVHAASGVKRWSRPT-------------------------------IAGDVTSDIQ-QTRQTHLEAARQAELAQTGA--KGGKDGGGKKRGREE--IDPLDPTGGRGSGGWTQGL 368
+ DRL KELAAQ+ARA A Y+ G SG ELA + T + + R +G Q + A K + L A L++ + +K E+ LE + + E+ S LP GW+ V+DP SGD YYW+ TN T WERP S V + + T SL +GW+EV AA+G + Y + + W+RP + + SD + + QT R A Q A +G +D K+R R++ IDP+DPTG G W+ GL
Sbjct: 7 VAADRLKKELAAQKARAEALKYLHSTG----------------SGPSQRELAQQQQLRQKQTANATSAVAQRRVIGAQPKPSAADKFDPRVRDNTLHAVALRRAQELQKTHQIEQKVESYRLESKTTTEQ-SNALPPGWQEVVDP-ASGDSYYWNETTNETVWERPGSSAVKKVETAEPKTTA----------------------------------------DSLADGWEEVPDAASGDVYYWNRKTNETTWTRPVARSVSLAQAIEAKAKLDSILKGCGHSVAKTKTSTNSASDAKPSSDQTTSAKKRPASRTQNNAISQGHRD---KRRKRDDGVIDPMDPTG--TGGKWSDGL 300
BLAST of EWM25652.1 vs. NCBI_GenBank
Match: gi|570969047|gb|ETP32166.1| (hypothetical protein F442_19073 [Phytophthora parasitica P10297]) HSP 1 Score: 79.7221 bits (195), Expect = 4.773e-13 Identity = 97/361 (26.87%), Postives = 137/361 (37.95%), Query Frame = 0
Query: 58 LQGDRLAKELAAQQARAAARAYVTDKGCMNVSVTERVLNRGTYSGAEAEELAIAAGGGLSVHKDNTLEILRERELGRQRQAKDAQK------EANLKAKLLQQQENFRK----EKATGKGDLEGQGSVERDSTPLPAGWEAVMDPQGSGDYYYWHAGTNVTTWERPSSQIPTAVPSGDTGVTTLKNHTSGSFLSSETSGGGEPGHGREPTGRGGTELPRANDLGSLPEGWKEVKHAATGQICYVHAASGVKRWSRPT---IAGDVT--------------------------------SDIQ-QTRQTHLEAARQAELAQTGA--KGGKDGGGKKRGREE--IDPLDPTGGRGSGGWTQGL 368
+ DRL KELAAQ+ARA A Y+ G SG ELA + T + + R +G Q + A K + L A L++ + +K E+ LE + + E+ S LP GW+ V+DP SGD YYW+ TN T WERP S V + + T SL +GW+EV AA+G + Y + + W+RP +A V+ SD + + QT R A Q A +G +D K+R R++ IDP+DPTG G W+ GL
Sbjct: 7 VAADRLKKELAAQKARAEALKYLHSTG----------------SGPSQRELAQQQQLRQKQTANATSAVAQRRVIGAQPEPSAADKFDPRVRDNTLHAVALRRAQELQKTHQIEQKVESYRLESKTTTEQ-SNALPPGWQEVVDP-ASGDSYYWNETTNETVWERPGSSAVKKVETAEPKTTA----------------------------------------DSLADGWEEVPDAASGDVYYWNRKTNETTWTRPVARPVARSVSLAQAIEAKAKLDSILKGCGHSVAKTKTSTNSASDAKPSSDQTTSAKKRPASRTQNNAISQGHRD---KRRKRDDGVIDPMDPTG--TGGKWSDGL 304
BLAST of EWM25652.1 vs. NCBI_GenBank
Match: gi|565368987|ref|XP_006351120.1| (PREDICTED: uncharacterized protein LOC102606319 [Solanum tuberosum] >gi|971557049|ref|XP_015165837.1| PREDICTED: uncharacterized protein LOC102606319 [Solanum tuberosum]) HSP 1 Score: 81.6481 bits (200), Expect = 4.912e-13 Identity = 71/230 (30.87%), Postives = 104/230 (45.22%), Query Frame = 0
Query: 182 LPAGWEAVMDPQGSGDYYYWHAGTNVTTWERPSSQIPTAVPSGDTGVTTLKNHTSGSFLSSETSGGGEPGHGREPTGRGGTELPRANDLGS----LPEGWKEVKHAA----TGQICYVHAASGVKRWSRPTIAGDVTSDIQQTRQTHLEAARQAELAQTGAKGGKDGGGKKRGRE--EIDPLDPTGGRGS--GGWTQGLGGGD-RMADSTAGGSLWQQRPLPAPGAVLKK 398
LP W+ V+D + SG YY+++ TNV+ WE PS A+ D V N T+ + + ++ PR ++ G L + W KH Q YV A V+R + + VT D + Q +++ +K K K+ E E+DP+DP+ + GGW GL G R AD+TA G L+QQRP P+PGAVL+K
Sbjct: 294 LPEYWQEVLD-ESSGQKYYYNSQTNVSQWEHPSKPRQVAIQHHDRAVAN--NATNVTRVDQAST------------------FPRCSECGGWGVGLVQSWGYCKHCTRVLKLPQSQYVSA--NVERQQQTSGDAGVTEDTDKKFQR-----QRSSFKPPMSKSNKKDKRKRTNDEDDELDPMDPSSYSDAPRGGWVVGLKGVQPRAADTTATGPLFQQRPYPSPGAVLRK 495
BLAST of EWM25652.1 vs. NCBI_GenBank
Match: gi|567948751|gb|ETK74492.1| (hypothetical protein L915_18722 [Phytophthora parasitica]) HSP 1 Score: 78.5666 bits (192), Expect = 1.249e-12 Identity = 94/357 (26.33%), Postives = 135/357 (37.82%), Query Frame = 0
Query: 58 LQGDRLAKELAAQQARAAARAYVTDKGCMNVSVTERVLNRGTYSGAEAEELAIAAGGGLSVHKDNTLEILRERELGRQRQAKDAQK------EANLKAKLLQQQENFRK----EKATGKGDLEGQGSVERDSTPLPAGWEAVMDPQGSGDYYYWHAGTNVTTWERPSSQIPTAVPSGDTGVTTLKNHTSGSFLSSETSGGGEPGHGREPTGRGGTELPRANDLGSLPEGWKEVKHAATGQICYVHAASGVKRWSRPT-------------------------------IAGDVTSDIQ-QTRQTHLEAARQAELAQTGA--KGGKDGGGKKRGREE--IDPLDPTGGRGSGGWTQGL 368
+ DRL KELAAQ+ARA A Y+ G SG ELA + T + + R +G Q + A K + L A L++ + +K E+ LE + + E+ S LP GW+ V+DP SGD YYW+ TN T WERP S V + + T SL +GW+EV AA+G + Y + + W++P + + SD + + QT R A Q A +G +D K+R R++ IDP+DPTG G W+ GL
Sbjct: 7 VAADRLKKELAAQKARAEALKYLHSTG----------------SGPSQRELAQQQQLRQKQTANATSAVAQRRVIGAQPEPSAADKFDPRVRDNTLHAVALRRAQELQKTHQIEQKVESYRLESKTTTEQ-SNALPPGWQEVVDP-ASGDSYYWNETTNETVWERPGSSAVKKVETAEPKTTA----------------------------------------DSLADGWEEVPDAASGDVYYWNRKTNETTWTQPVARSVSLAQAIEAKAKLDSILKGCGHSVAKTKTSTNSASDAKPSSDQTTSAKKRPASRTQNNAISQGHRD---KRRKRDDGVIDPMDPTG--TGGKWSDGL 300 The following BLAST results are available for this feature:
BLAST of EWM25652.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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