rna5030, rna5030 (mRNA) Nannochloropsis gaditana

Overview
Namerna5030
Unique Namerna5030
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length491
Alignment locationCM002464.1:965022..966590 -

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100500g3.3108.mrna
Orig protein idgnl|cribi|Naga_100500g3.3108
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002464.1supercontigCM002464.1:965022..966590 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100500g3gene4858Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna5030rna5030-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM25656.1cds5018Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna5030 ID=rna5030|Name=rna5030|organism=Nannochloropsis gaditana|type=mRNA|length=491bp
GGATGTCGTCCTTGTCAGGAGCAGGGGGCCGGCCGTTGTCGGTGGGGGAG
GAGGGACGGATGGGAGGCGGGGAGGGAGGGGGCGGGGAGGGGAAGAAGTC
CATGGCACCAGGGGGTGTGGCTGGAGGAAGCGTGGGGGCAGGGGGCGCGG
GAGGACCGTTGGTGGAGTTCAAACAGGCCAAGGACTACGTGACCACCATC
AAAAAACGCTTTGCCAGCGAGCCTCACCAGGCGACGTACAAGGCCTTTTT
GAAAATTCTTCACCATTACCAAGAGGAACAACGCAACATCATGGACGTGC
TCGAACAGGTTTCCTCCCTCTTCGCGGACCATCCCGATCTGCTGAAAGAG
TTCACGTATTTTCTTCCTGATGCGGTTCAGGAGCAGGCGAAGGAGCGACT
GAATCGCGCCGCGGAAGAGAGTGAAATGCGGAAAGCCGCCCGACAGCAAC
AGCAAGCTGCCCGCATGGGAGGCGCCTGGGGTAAGTCGTAG
back to top

protein sequence of rna5030

>rna5030-protein ID=rna5030-protein|Name=rna5030|organism=Nannochloropsis gaditana|type=polypeptide|length=124bp
MSLSPCLWHQLKYRFLSPWSDKQRFSYRMRTSLLVGALGAAILSLLSLSL
SAAMNLETSAASLGGYQRQIYQYFDNVRQGDRGQYGAANGARACERFVRD
KAMQTDLAEVISGFYNNDVAAMFA
back to top

mRNA from alignment at CM002464.1:965022..966590-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna5030 ID=rna5030|Name=rna5030|organism=Nannochloropsis gaditana|type=mRNA|length=1569bp|location=Sequence derived from alignment at CM002464.1:965022..966590- (Nannochloropsis gaditana)
CTTGTGTCTGAAAAATAAGGCCCTTAGAAGTCTCCTTCTTCAGCTTGAAG
GACGGCATCGGCCGTCGCTTGTAGGCTAGCGGAATGTCCCTATCGCCCTG
TCTATGGCACCAGCTCAAGTACCGTTTCCTTTCTCCCTGGTCAGACAAAC
AGCGCTTCAGTTACAGGATGAGAACATCCTTACTCGTAGGTGCACTTGGT
GCAGCGATACTTTCCCTTCTATCCCTCTCCCTGTCCGCTGCCATGAACCT
TGAAACATCTGCGGCGTCCCTTGGCGGGTATCAACGCCAAATTTATCAAT
ATTTTGACAACGTACGACAAGGCGACCGTGGGCAATATGGTGAGTTTAAA
ACAAAATTTCGAATCAAGAATGGTGGACACGACCACACGGCGGGTGGCAT
ATGCAAAAGCTTCGACCGGTGGAGCGTTGTGTGTCTTGTCGAACTCATTC
CCACTCTTATGCCCCTTTGCTTCTCGCAGGAGCTGCCAATGGTGCTCGTG
CATGCGAACGCTTTGTGCGTGACAAGGCAATGCAGACTGATTTGGCGGAG
GTGAGTCGAACAGAAGTATAAGTTGCCTGTGTAAGTTTTGTGTCGATCCG
CCCAGGGCCAGCGAGTAAGATGATTTAAAAGGTCAATTTAGAGGATTTTG
GAGGGTGAAGGCTGATAGCCCACCGCCAATGTGCGGTGTCGCGTTGGAGA
GCTTTTGATGTGCTGAATATTCTTGCGCCAATAAACACAGGTTATCTCTG
GGTTTTACAACAACGACGTCGCCGCCATGTTTGCCTAGCAACGGACCGAA
AAATTAAAAAAGATGATGGATGATGGATGGCGGCGAGATTGAGAAAGCAG
GAAATCGCGAGCATTGGTCCGCACAACACACCACTGCTTCTGTGACCGAA
TCGAGTCAGGAAGGTCTGAGCAAGCGGAGCAAGAATTTTCCCTTCCAAAT
TTTTCTTTAAGAACTTTGGAGTGATTTGTACAACCTCAGCGGAAGCATTA
CGCAAGGGCATTTCATCATGAAATGTCTCGTTCCTACACAAAAAACAAGG
GCAAGAACATGAACAACAAACAAAACGGAGATATACTCTGGAAAAGAGAC
CAAAACCCGTGACGGATGAGAATCAAAATCAATGCAATCAAAAAACGCAG
GAGTCGGTGCTGGTACTACTTGGTGACATTATCTCATACGGTGCAGCGAA
CAAGGCGTGAAAAAAATAGCATATTTGCAGGAAATAGGTGAATTTGTCCA
TCCATGCAGCTGATCTCTCCTCAGCAAAATTAGGTACATTCTTCTAGTCT
AAAATTTATGAATTGGAAATGGTGACGTGTATAACTCTTCGCAGAAGTCT
GCTTGTGTATTTAGAGGAAAGAAAGGTTCGGATGGAAGGAGTGAGACGCC
TGAACTAGAAAATCAAAATTAACGGAAACTCATACAGTTGTCGAATAGCA
CTTCGTTCCCTTCTGTCACATTGAAATGATATTGCATGGAGATGCCACGG
AATCGATATGGCGCGTATGCCGTTACCGAACCTTCGGTCCCACGACCTTG
CCACGACCCATCCTCAAAT
back to top

Coding sequence (CDS) from alignment at CM002464.1:965022..966590-

>rna5030 ID=rna5030|Name=rna5030|organism=Nannochloropsis gaditana|type=CDS|length=1125bp|location=Sequence derived from alignment at CM002464.1:965022..966590- (Nannochloropsis gaditana)
GTTATCTCTGGGTTTTACAACAACGACGTCGCCGCCATGTTTGCCTAGGA
GCTGCCAATGGTGCTCGTGCATGCGAACGCTTTGTGCGTGACAAGGCAAT
GCAGACTGATTTGGCGGAGATGTCCCTATCGCCCTGTCTATGGCACCAGC
TCAAGTACCGTTTCCTTTCTCCCTGGTCAGACAAACAGCGCTTCAGTTAC
AGGATGAGAACATCCTTACTCGTAGGTGCACTTGGTGCAGCGATACTTTC
CCTTCTATCCCTCTCCCTGTCCGCTGCCATGAACCTTGAAACATCTGCGG
CGTCCCTTGGCGGGTATCAACGCCAAATTTATCAATATTTTGACAACGTA
CGACAAGGCGACCGTGGGCAATATGGTTATCTCTGGGTTTTACAACAACG
ACGTCGCCGCCATGTTTGCCTAGGAGCTGCCAATGGTGCTCGTGCATGCG
AACGCTTTGTGCGTGACAAGGCAATGCAGACTGATTTGGCGGAGATGTCC
CTATCGCCCTGTCTATGGCACCAGCTCAAGTACCGTTTCCTTTCTCCCTG
GTCAGACAAACAGCGCTTCAGTTACAGGATGAGAACATCCTTACTCGTAG
GTGCACTTGGTGCAGCGATACTTTCCCTTCTATCCCTCTCCCTGTCCGCT
GCCATGAACCTTGAAACATCTGCGGCGTCCCTTGGCGGGTATCAACGCCA
AATTTATCAATATTTTGACAACGTACGACAAGGCGACCGTGGGCAATATG
GTTATCTCTGGGTTTTACAACAACGACGTCGCCGCCATGTTTGCCTAGGA
GCTGCCAATGGTGCTCGTGCATGCGAACGCTTTGTGCGTGACAAGGCAAT
GCAGACTGATTTGGCGGAGATGTCCCTATCGCCCTGTCTATGGCACCAGC
TCAAGTACCGTTTCCTTTCTCCCTGGTCAGACAAACAGCGCTTCAGTTAC
AGGATGAGAACATCCTTACTCGTAGGTGCACTTGGTGCAGCGATACTTTC
CCTTCTATCCCTCTCCCTGTCCGCTGCCATGAACCTTGAAACATCTGCGG
CGTCCCTTGGCGGGTATCAACGCCAAATTTATCAATATTTTGACAACGTA
CGACAAGGCGACCGTGGGCAATATG
back to top
Synonyms
Publications