EWM25656.1, cds5018 (CDS) Nannochloropsis gaditana

Overview
NameEWM25656.1
Unique Namecds5018
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002464.1:966252..966507 -
Alignment locationCM002464.1:966041..966111 -
Alignment locationCM002464.1:965803..965850 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM25656.1
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100500g3.3108.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002464.1supercontigCM002464.1:966252..966507 -
CM002464.1supercontigCM002464.1:966041..966111 -
CM002464.1supercontigCM002464.1:965803..965850 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
[Close]
BLAST of EWM25656.1 vs. NCBI_GenBank
Match: gi|585107485|gb|EWM25656.1| (hypothetical protein Naga_100500g3 [Nannochloropsis gaditana])

HSP 1 Score: 254.988 bits (650), Expect = 4.891e-86
Identity = 124/124 (100.00%), Postives = 124/124 (100.00%), Query Frame = 0 
Query:    1 MSLSPCLWHQLKYRFLSPWSDKQRFSYRMRTSLLVGALGAAILSLLSLSLSAAMNLETSAASLGGYQRQIYQYFDNVRQGDRGQYGAANGARACERFVRDKAMQTDLAEVISGFYNNDVAAMFA 124
            MSLSPCLWHQLKYRFLSPWSDKQRFSYRMRTSLLVGALGAAILSLLSLSLSAAMNLETSAASLGGYQRQIYQYFDNVRQGDRGQYGAANGARACERFVRDKAMQTDLAEVISGFYNNDVAAMFA
Sbjct:    1 MSLSPCLWHQLKYRFLSPWSDKQRFSYRMRTSLLVGALGAAILSLLSLSLSAAMNLETSAASLGGYQRQIYQYFDNVRQGDRGQYGAANGARACERFVRDKAMQTDLAEVISGFYNNDVAAMFA 124
[Close]
BLAST of EWM25656.1 vs. NCBI_GenBank
Match: gi|553178883|ref|XP_005852616.1| (hypothetical protein NGA_0412602 [Nannochloropsis gaditana CCMP526] >gi|422295916|gb|EKU23215.1| hypothetical protein NGA_0412602 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 192.586 bits (488), Expect = 1.186e-61
Identity = 96/96 (100.00%), Postives = 96/96 (100.00%), Query Frame = 0 
Query:   29 MRTSLLVGALGAAILSLLSLSLSAAMNLETSAASLGGYQRQIYQYFDNVRQGDRGQYGAANGARACERFVRDKAMQTDLAEVISGFYNNDVAAMFA 124
            MRTSLLVGALGAAILSLLSLSLSAAMNLETSAASLGGYQRQIYQYFDNVRQGDRGQYGAANGARACERFVRDKAMQTDLAEVISGFYNNDVAAMFA
Sbjct:    1 MRTSLLVGALGAAILSLLSLSLSAAMNLETSAASLGGYQRQIYQYFDNVRQGDRGQYGAANGARACERFVRDKAMQTDLAEVISGFYNNDVAAMFA 96
The following BLAST results are available for this feature:
BLAST of EWM25656.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 2
Match NameE-valueIdentityDescription
gi|585107485|gb|EWM25656.1|4.891e-86100.00hypothetical protein Naga_100500g3 [Nannochloropsi... [more]
gi|553178883|ref|XP_005852616.1|1.186e-61100.00hypothetical protein NGA_0412602 [Nannochloropsis ... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna5030rna5030Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications