rna5023, rna5023 (mRNA) Nannochloropsis gaditana

Overview
Namerna5023
Unique Namerna5023
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1286
Alignment locationCM002464.1:951155..952421 -

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Properties
Property NameValue
Producte3 ubiquitin-protein ligase march6
Orig transcript idgnl|cribi|Naga_100546g1.2627.mrna
Orig protein idgnl|cribi|Naga_100546g1.2627
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002464.1supercontigCM002464.1:951155..952421 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100546g1gene4851Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna5023rna5023-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM25660.1cds5011Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna5023 ID=rna5023|Name=rna5023|organism=Nannochloropsis gaditana|type=mRNA|length=1286bp
GCCCGTACCCTCTCCGCCTTCCATCACCTCCTCCCCCTCCTTCAGCCCTT
CCGCTTGCCCCTCCTCCGGGCTGGCCAAGCCGCCCTCCTCCTCGCCCTCT
GGCTCCTCCTCCTCCCCCTCCTGGTCGGCCTCCTCTTCGAGCTCGCCGTC
ATCCTCCCCGCCCGCGTGCCCGTGGACGAGACGCCTTTGATCCCCCTCTA
CGAGGCCTGGGTGTTGGGGCTGGTGTTTTTGAAAATATCGGTCCGCTGCC
TCCTGCTTGGCCTGCTCGGCAACGACCACCCCTGGAAACGGAAATTTGAA
CGCGTCGGGGCCAACGGTTTTTGGAACTTGGACTTTACCTGGACCTTACG
CCACGTCGTCCTCCCCGTCCTTTGCCTCTTCCTCTCCCTCCTCCTTCCTC
CCTACTTCTTCAGCAAGAGTGTGGAGAGGCTCGGTTACCTCTACCTGCGG
CACGTGGTGCTTCCCGCCCCCTCCCCCCCGCCCTTCCCCGCTTCCTCCCC
CGCTTCCTCCTTCGCTTCCTGGCTCCTGCCTGGCATGCGCAAGAACAGGA
GCGGGATGCCTATGTCAGCCTCGTCCTTTACATGATCGCAGGGTTGAAGC
GGATGGTGTATGTGGCCTACCTCCTCTGGCGACTGAGCGTGTATGGTGCC
CGGGGGCTCCACTCGGGCTTTCGGCATTTGCACGACAAACTCCGAGACGA
CGTGTACCTGGTCGGTGTGGAGTTAAGGAACCATTACGGGCAAGAGGAAA
GGATGGGGGGGCGAGGAGGGGGAGAGGGGCAAAAGATGGAATGAAGAAGC
GCTTGGGCGGATCGGATCGGGACGCGCCGGCTGGGGCAGACGGGAAAGGG
AGGAAGAGGATGGGAACGAGGGAGGGAGAGAAGGAGGGAGGGAGGGAGGC
ACAAAAGGAGGAAAAGAGTGTCTAGTCGCCACGTGTGTGACAGGATCTAT
ACAGCCGGCCTTTAGTGGGCGGAAAGGCTTCTCAGGGCGTCTCTTGAGTG
ATGGGAACGGGACTAGGATAAAGAGACGAGGTTGAGAATCGTTGTAACGA
AGGACGCAGGGGTGTGCAGGAAATCACTTGAGATGACGGCCCATACAGAT
TCCTAACACTTCATACCGTGTATGGACGGAGGAGGAGCGCACAGGCACAG
GGAAAAAAAAAAAAAAAAAAGTCGGTTTTTTTTGGGGGGGACTTGCCGCT
ACATGTCTTTTTTAAAATTTTTTCTCACACGAGGAGGAGACACGACAGGA
AGGGAAAGGTCCTGGAAGCCAGGAGCAATCCCACCC
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protein sequence of rna5023

>rna5023-protein ID=rna5023-protein|Name=rna5023|organism=Nannochloropsis gaditana|type=polypeptide|length=298bp
MSSSPTSPHHVTRNGGMCPSSDPCDHFSEEIATPASPMPEASQCAVLSPD
TNTLADGSAQQGIAILNEDASVSGFGEVQQMDVDKGRGKEEDAVCRVCHT
EAEPTEGRPLYHPCLCRGSIKHVHQDCLMRWLQASSNTAKKCELCGASFA
FTALYAPGAPAQLTSWEMVQGLMRKGAAFVPRLVKGGALSLLWLGVLPYV
TQGAFQFFFATSWEEVEEVLDGVVGRLMRVEGGAVETGGRFLWTCLGGVA
LCVGIVLLSLTALSLRDREEGEEEERKEDEVMVWTGKLPSRLLVPQSR
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mRNA from alignment at CM002464.1:951155..952421-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna5023 ID=rna5023|Name=rna5023|organism=Nannochloropsis gaditana|type=mRNA|length=1267bp|location=Sequence derived from alignment at CM002464.1:951155..952421- (Nannochloropsis gaditana)
ATGTCCTCTTCCCCTACCAGCCCGCACCATGTCACCCGAAATGGGGGCAT
GTGCCCCTCAAGTGATCCTTGTGATCACTTTTCCGAAGAGATTGCCACCC
CTGCATCTCCAATGCCTGAAGCATCCCAATGCGCCGTCCTTTCCCCCGAC
ACAAACACATTGGCTGACGGATCCGCCCAGCAAGGCATCGCAATATTGAA
TGAAGATGCCAGCGTGTCGGGTTTCGGGGAAGTGCAACAAATGGATGTGG
ACAAGGGAAGGGGGAAGGAGGAAGACGCTGTGTGCCGCGTTTGTCATACT
GAAGCCGAACCGACCGAGGGCCGCCCACTTTATCACCCCTGCCTGTGTCG
CGGCTCCATCAAGCACGTGCACCAGGACTGTTTGATGCGATGGCTGCAGG
CGTCCAGCAACACGGCCAAGAAATGTGAATTGTGTGGGGCTTCCTTTGCC
TTCACGGCCTTGTACGCGCCGGGGGCTCCGGCCCAGTTGACCTCGTGGGA
GATGGTGCAAGGACTGATGCGAAAAGGGGCAGCTTTTGTCCCTCGGCTGG
TCAAGGGGGGCGCGCTGTCGTTGTTGTGGCTGGGTGTTCTGCCCTATGTG
ACACAGGGGGCGTTCCAATTCTTTTTTGCGACCAGCTGGGAGGAGGTTGA
AGAGGTGCTCGACGGGGTGGTGGGGAGGTTGATGAGGGTGGAAGGCGGGG
CCGTGGAGACGGGAGGGCGTTTTCTCTGGACCTGTCTGGGCGGCGTGGCG
TTGTGCGTGGGCATTGTCTTGCTGAGTTTGACGGCCCTGAGCCTGCGGGA
TCGGGTCCTAGGGCTCGTGCGGCGGATTCGAAGGGGATGGGGAAGGAGGG
CGGGAAGGAGGGGCCAAGGGAGGGGAAGGGGGGCGGAGGAGGGGCGGAGA
AGAAACCGAGGGGTGCAAGCGAATGGGGAGCGGGGGGAGGCAGGAGGACG
GGGGGGAGGGGGCGGGGGAGGGGGGTGGGGGGAGGGAGGAAGGGAGGCAG
GAAGGGAGGGAGGAGGAGGAGGCGTGCTGGGAGGAGACGGAGAGGGCCGT
GCGGTATCAGGGACAGAAGGGGTACCTCCGAGGGAAGAAGGAAGAGATGG
TGGAGAAAGAGGAGTGAGAGAAGGGGGAGGAGGAGGTGGTGATGGTAGCG
GTGGAGGCGGGGGGGGGGACGAAGGAAGAGGGGGAGGAGGAGGAGAGGAA
GGAAGACGAGGTGATGGTGTGGACGGGAAAGTTGCCCTCCAGGCTCCTCG
TTCCGCAGTCGAGGTAA
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Coding sequence (CDS) from alignment at CM002464.1:951155..952421-

>rna5023 ID=rna5023|Name=rna5023|organism=Nannochloropsis gaditana|type=CDS|length=1794bp|location=Sequence derived from alignment at CM002464.1:951155..952421- (Nannochloropsis gaditana)
GAAGAGGGGGAGGAGGAGGAGAGGAAGGAAGACGAGGTGATGGTGTGGAC
GGGAAAGTTGCCCTCCAGGCTCCTCGTTCCGCAGTCGAGGTAAATGTCCT
CTTCCCCTACCAGCCCGCACCATGTCACCCGAAATGGGGGCATGTGCCCC
TCAAGTGATCCTTGTGATCACTTTTCCGAAGAGATTGCCACCCCTGCATC
TCCAATGCCTGAAGCATCCCAATGCGCCGTCCTTTCCCCCGACACAAACA
CATTGGCTGACGGATCCGCCCAGCAAGGCATCGCAATATTGAATGAAGAT
GCCAGCGTGTCGGGTTTCGGGGAAGTGCAACAAATGGATGTGGACAAGGG
AAGGGGGAAGGAGGAAGACGCTGTGTGCCGCGTTTGTCATACTGAAGCCG
AACCGACCGAGGGCCGCCCACTTTATCACCCCTGCCTGTGTCGCGGCTCC
ATCAAGCACGTGCACCAGGACTGTTTGATGCGATGGCTGCAGGCGTCCAG
CAACACGGCCAAGAAATGTGAATTGTGTGGGGCTTCCTTTGCCTTCACGG
CCTTGTACGCGCCGGGGGCTCCGGCCCAGTTGACCTCGTGGGAGATGGTG
CAAGGACTGATGCGAAAAGGGGCAGCTTTTGTCCCTCGGCTGGTCAAGGG
GGGCGCGCTGTCGTTGTTGTGGCTGGGTGTTCTGCCCTATGTGACACAGG
GGGCGTTCCAATTCTTTTTTGCGACCAGCTGGGAGGAGGTTGAAGAGGTG
CTCGACGGGGTGGTGGGGAGGTTGATGAGGGTGGAAGGCGGGGCCGTGGA
GACGGGAGGGCGTTTTCTCTGGACCTGTCTGGGCGGCGTGGCGTTGTGCG
TGGGCATTGTCTTGCTGAGTTTGACGGCCCTGAGCCTGCGGGATCGGGAA
GAGGGGGAGGAGGAGGAGAGGAAGGAAGACGAGGTGATGGTGTGGACGGG
AAAGTTGCCCTCCAGGCTCCTCGTTCCGCAGTCGAGGTAAATGTCCTCTT
CCCCTACCAGCCCGCACCATGTCACCCGAAATGGGGGCATGTGCCCCTCA
AGTGATCCTTGTGATCACTTTTCCGAAGAGATTGCCACCCCTGCATCTCC
AATGCCTGAAGCATCCCAATGCGCCGTCCTTTCCCCCGACACAAACACAT
TGGCTGACGGATCCGCCCAGCAAGGCATCGCAATATTGAATGAAGATGCC
AGCGTGTCGGGTTTCGGGGAAGTGCAACAAATGGATGTGGACAAGGGAAG
GGGGAAGGAGGAAGACGCTGTGTGCCGCGTTTGTCATACTGAAGCCGAAC
CGACCGAGGGCCGCCCACTTTATCACCCCTGCCTGTGTCGCGGCTCCATC
AAGCACGTGCACCAGGACTGTTTGATGCGATGGCTGCAGGCGTCCAGCAA
CACGGCCAAGAAATGTGAATTGTGTGGGGCTTCCTTTGCCTTCACGGCCT
TGTACGCGCCGGGGGCTCCGGCCCAGTTGACCTCGTGGGAGATGGTGCAA
GGACTGATGCGAAAAGGGGCAGCTTTTGTCCCTCGGCTGGTCAAGGGGGG
CGCGCTGTCGTTGTTGTGGCTGGGTGTTCTGCCCTATGTGACACAGGGGG
CGTTCCAATTCTTTTTTGCGACCAGCTGGGAGGAGGTTGAAGAGGTGCTC
GACGGGGTGGTGGGGAGGTTGATGAGGGTGGAAGGCGGGGCCGTGGAGAC
GGGAGGGCGTTTTCTCTGGACCTGTCTGGGCGGCGTGGCGTTGTGCGTGG
GCATTGTCTTGCTGAGTTTGACGGCCCTGAGCCTGCGGGATCGG
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Synonyms
Publications