EWM25660.1, cds5011 (CDS) Nannochloropsis gaditana
Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM25660.1 vs. NCBI_GenBank
Match: gi|585107493|gb|EWM25660.1| (e3 ubiquitin-protein ligase march6 [Nannochloropsis gaditana]) HSP 1 Score: 611.683 bits (1576), Expect = 0.000e+0 Identity = 298/298 (100.00%), Postives = 298/298 (100.00%), Query Frame = 0 Query: 1 MSSSPTSPHHVTRNGGMCPSSDPCDHFSEEIATPASPMPEASQCAVLSPDTNTLADGSAQQGIAILNEDASVSGFGEVQQMDVDKGRGKEEDAVCRVCHTEAEPTEGRPLYHPCLCRGSIKHVHQDCLMRWLQASSNTAKKCELCGASFAFTALYAPGAPAQLTSWEMVQGLMRKGAAFVPRLVKGGALSLLWLGVLPYVTQGAFQFFFATSWEEVEEVLDGVVGRLMRVEGGAVETGGRFLWTCLGGVALCVGIVLLSLTALSLRDREEGEEEERKEDEVMVWTGKLPSRLLVPQSR 298 MSSSPTSPHHVTRNGGMCPSSDPCDHFSEEIATPASPMPEASQCAVLSPDTNTLADGSAQQGIAILNEDASVSGFGEVQQMDVDKGRGKEEDAVCRVCHTEAEPTEGRPLYHPCLCRGSIKHVHQDCLMRWLQASSNTAKKCELCGASFAFTALYAPGAPAQLTSWEMVQGLMRKGAAFVPRLVKGGALSLLWLGVLPYVTQGAFQFFFATSWEEVEEVLDGVVGRLMRVEGGAVETGGRFLWTCLGGVALCVGIVLLSLTALSLRDREEGEEEERKEDEVMVWTGKLPSRLLVPQSR Sbjct: 1 MSSSPTSPHHVTRNGGMCPSSDPCDHFSEEIATPASPMPEASQCAVLSPDTNTLADGSAQQGIAILNEDASVSGFGEVQQMDVDKGRGKEEDAVCRVCHTEAEPTEGRPLYHPCLCRGSIKHVHQDCLMRWLQASSNTAKKCELCGASFAFTALYAPGAPAQLTSWEMVQGLMRKGAAFVPRLVKGGALSLLWLGVLPYVTQGAFQFFFATSWEEVEEVLDGVVGRLMRVEGGAVETGGRFLWTCLGGVALCVGIVLLSLTALSLRDREEGEEEERKEDEVMVWTGKLPSRLLVPQSR 298
BLAST of EWM25660.1 vs. NCBI_GenBank
Match: gi|553180669|ref|XP_005853442.1| (E3 ubiquitin-protein ligase MARCH6, partial [Nannochloropsis gaditana CCMP526] >gi|422295619|gb|EKU22918.1| E3 ubiquitin-protein ligase MARCH6, partial [Nannochloropsis gaditana CCMP526]) HSP 1 Score: 363.999 bits (933), Expect = 2.130e-125 Identity = 173/173 (100.00%), Postives = 173/173 (100.00%), Query Frame = 0 Query: 1 MSSSPTSPHHVTRNGGMCPSSDPCDHFSEEIATPASPMPEASQCAVLSPDTNTLADGSAQQGIAILNEDASVSGFGEVQQMDVDKGRGKEEDAVCRVCHTEAEPTEGRPLYHPCLCRGSIKHVHQDCLMRWLQASSNTAKKCELCGASFAFTALYAPGAPAQLTSWEMVQGLM 173 MSSSPTSPHHVTRNGGMCPSSDPCDHFSEEIATPASPMPEASQCAVLSPDTNTLADGSAQQGIAILNEDASVSGFGEVQQMDVDKGRGKEEDAVCRVCHTEAEPTEGRPLYHPCLCRGSIKHVHQDCLMRWLQASSNTAKKCELCGASFAFTALYAPGAPAQLTSWEMVQGLM Sbjct: 6 MSSSPTSPHHVTRNGGMCPSSDPCDHFSEEIATPASPMPEASQCAVLSPDTNTLADGSAQQGIAILNEDASVSGFGEVQQMDVDKGRGKEEDAVCRVCHTEAEPTEGRPLYHPCLCRGSIKHVHQDCLMRWLQASSNTAKKCELCGASFAFTALYAPGAPAQLTSWEMVQGLM 178
BLAST of EWM25660.1 vs. NCBI_GenBank
Match: gi|565359175|ref|XP_006346393.1| (PREDICTED: probable E3 ubiquitin ligase SUD1 isoform X1 [Solanum tuberosum]) HSP 1 Score: 122.094 bits (305), Expect = 2.313e-27 Identity = 71/210 (33.81%), Postives = 108/210 (51.43%), Query Frame = 0 Query: 94 VCRVCHTEAEPTEGRPLYHPCLCRGSIKHVHQDCLMRWLQASSNTAKKCELCGASFAFTALYAPGAPAQLTSWEMVQGLMRKGAAFVPRLVKGGALSLLWLGVLPYVTQGAFQFFFATSWEEVEEVLDGVVGRLMRVEGGAVETGGRFLWTCLGGVALCVGIVLLSLTALSLRD-----REEGEEEERKEDEVMVWTGKLPSRLLVPQSR 298 VCR+C E PL +PC C GSIK+VHQDCL++WL S+ A++CE+C +F+F+ +YA APA+L E V G+ K + ++ + +WL ++P++T ++ F S+ E + G + + L CL G L IV + L A SLRD RE G +E +ED+V + P R + P +R Sbjct: 69 VCRICRNPGEADN--PLRYPCACSGSIKYVHQDCLLQWLNHSN--ARQCEVCKHAFSFSPVYAENAPARLPFQEFVVGMAMKACHVLQFFLRLSFVLSVWLLIIPFITFWIWRLAFVRSFGEAHRLFLGHLSTTI------------ILTDCLHGFLLSASIVFIFLGATSLRDYFRHLRELGGQEADREDDVDRNAARAPRRPVAPANR 262
BLAST of EWM25660.1 vs. NCBI_GenBank
Match: gi|971548724|ref|XP_015163756.1| (PREDICTED: probable E3 ubiquitin ligase SUD1 isoform X2 [Solanum tuberosum]) HSP 1 Score: 122.094 bits (305), Expect = 2.335e-27 Identity = 71/210 (33.81%), Postives = 108/210 (51.43%), Query Frame = 0 Query: 94 VCRVCHTEAEPTEGRPLYHPCLCRGSIKHVHQDCLMRWLQASSNTAKKCELCGASFAFTALYAPGAPAQLTSWEMVQGLMRKGAAFVPRLVKGGALSLLWLGVLPYVTQGAFQFFFATSWEEVEEVLDGVVGRLMRVEGGAVETGGRFLWTCLGGVALCVGIVLLSLTALSLRD-----REEGEEEERKEDEVMVWTGKLPSRLLVPQSR 298 VCR+C E PL +PC C GSIK+VHQDCL++WL S+ A++CE+C +F+F+ +YA APA+L E V G+ K + ++ + +WL ++P++T ++ F S+ E + G + + L CL G L IV + L A SLRD RE G +E +ED+V + P R + P +R Sbjct: 69 VCRICRNPGEADN--PLRYPCACSGSIKYVHQDCLLQWLNHSN--ARQCEVCKHAFSFSPVYAENAPARLPFQEFVVGMAMKACHVLQFFLRLSFVLSVWLLIIPFITFWIWRLAFVRSFGEAHRLFLGHLSTTI------------ILTDCLHGFLLSASIVFIFLGATSLRDYFRHLRELGGQEADREDDVDRNAARAPRRPVAPANR 262
BLAST of EWM25660.1 vs. NCBI_GenBank
Match: gi|697183943|ref|XP_009600994.1| (PREDICTED: probable E3 ubiquitin ligase SUD1 isoform X2 [Nicotiana tomentosiformis]) HSP 1 Score: 120.939 bits (302), Expect = 7.157e-27 Identity = 71/210 (33.81%), Postives = 108/210 (51.43%), Query Frame = 0 Query: 94 VCRVCHTEAEPTEGRPLYHPCLCRGSIKHVHQDCLMRWLQASSNTAKKCELCGASFAFTALYAPGAPAQLTSWEMVQGLMRKGAAFVPRLVKGGALSLLWLGVLPYVTQGAFQFFFATSWEEVEEVLDGVVGRLMRVEGGAVETGGRFLWTCLGGVALCVGIVLLSLTALSLRD-----REEGEEEERKEDEVMVWTGKLPSRLLVPQSR 298 VCR+C E PL +PC C GSIK+VHQDCL++WL S+ A++CE+C +F+F+ +YA APA+L E V G+ K + ++ + +WL ++P++T ++ F S+ E + + G + + L CL G L IV + L A SLRD RE G +E +ED+ + P R VP +R Sbjct: 67 VCRICRNPGEADN--PLRYPCACSGSIKYVHQDCLLQWLNHSN--ARQCEVCKHAFSFSPVYAENAPARLPFQEFVVGMAMKACHVLQFFLRLSFVLSVWLIIIPFITFWIWRLAFVRSFGEAQRLFLGHLSTTI------------ILTDCLHGFLLSASIVFIFLGATSLRDYFRHLRELGGQEADREDDGDRNAARAPRRPAVPANR 260
BLAST of EWM25660.1 vs. NCBI_GenBank
Match: gi|697183941|ref|XP_009600993.1| (PREDICTED: probable E3 ubiquitin ligase SUD1 isoform X1 [Nicotiana tomentosiformis]) HSP 1 Score: 120.939 bits (302), Expect = 7.159e-27 Identity = 71/210 (33.81%), Postives = 108/210 (51.43%), Query Frame = 0 Query: 94 VCRVCHTEAEPTEGRPLYHPCLCRGSIKHVHQDCLMRWLQASSNTAKKCELCGASFAFTALYAPGAPAQLTSWEMVQGLMRKGAAFVPRLVKGGALSLLWLGVLPYVTQGAFQFFFATSWEEVEEVLDGVVGRLMRVEGGAVETGGRFLWTCLGGVALCVGIVLLSLTALSLRD-----REEGEEEERKEDEVMVWTGKLPSRLLVPQSR 298 VCR+C E PL +PC C GSIK+VHQDCL++WL S+ A++CE+C +F+F+ +YA APA+L E V G+ K + ++ + +WL ++P++T ++ F S+ E + + G + + L CL G L IV + L A SLRD RE G +E +ED+ + P R VP +R Sbjct: 67 VCRICRNPGEADN--PLRYPCACSGSIKYVHQDCLLQWLNHSN--ARQCEVCKHAFSFSPVYAENAPARLPFQEFVVGMAMKACHVLQFFLRLSFVLSVWLIIIPFITFWIWRLAFVRSFGEAQRLFLGHLSTTI------------ILTDCLHGFLLSASIVFIFLGATSLRDYFRHLRELGGQEADREDDGDRNAARAPRRPAVPANR 260
BLAST of EWM25660.1 vs. NCBI_GenBank
Match: gi|1026770150|gb|OAE29992.1| (hypothetical protein AXG93_669s1440 [Marchantia polymorpha subsp. ruderalis]) HSP 1 Score: 119.783 bits (299), Expect = 1.763e-26 Identity = 67/188 (35.64%), Postives = 105/188 (55.85%), Query Frame = 0 Query: 80 QMDVDKGRGKEEDAVCRVCHTEAEPTEGRPLYHPCLCRGSIKHVHQDCLMRWLQASSNTAKKCELCGASFAFTALYAPGAPAQLTSWEMVQGLMRKGAAFVPRLVKGGALSLLWLGVLPYVTQGAFQFFFATSWEEVEEVLDGVVGRLMRVEGGAVETGGRFLWTCLGGVALCVGIVLLSLTALSLRD 267 ++ K ++E+ VCR+C T + + PLY+PC C GSIK+VHQDCL++WL S+ A++CE+C +F+F+ +YA AP++L E++ GL+ K A V + + +WL +P+ T ++F F S+ E ++ + R T G L CL G L GIV + L A SLR+ Sbjct: 39 RLAASKNAAEDEEDVCRICRTPGD--DESPLYYPCACSGSIKYVHQDCLLQWLNHSN--ARQCEVCKHAFSFSPVYAENAPSRLPFQELLLGLVMKAARGVRFFCRLTFVLSVWLLFIPFTTFWIWRFTFVRSFNEAHKLF---ISRF---------TPGLLLTDCLHGFLLSAGIVFIFLGATSLRE 210
BLAST of EWM25660.1 vs. NCBI_GenBank
Match: gi|723665263|ref|XP_010315222.1| (PREDICTED: probable E3 ubiquitin ligase SUD1 [Solanum lycopersicum]) HSP 1 Score: 119.783 bits (299), Expect = 1.767e-26 Identity = 70/210 (33.33%), Postives = 107/210 (50.95%), Query Frame = 0 Query: 94 VCRVCHTEAEPTEGRPLYHPCLCRGSIKHVHQDCLMRWLQASSNTAKKCELCGASFAFTALYAPGAPAQLTSWEMVQGLMRKGAAFVPRLVKGGALSLLWLGVLPYVTQGAFQFFFATSWEEVEEVLDGVVGRLMRVEGGAVETGGRFLWTCLGGVALCVGIVLLSLTALSLRD-----REEGEEEERKEDEVMVWTGKLPSRLLVPQSR 298 VCR+C E PL +PC C GSIK+VHQDCL++WL S+ A++CE+C +F+F+ +YA APA+L E V G+ K + ++ + +WL ++P++T ++ F S+ E + G + + L CL G L IV + L A SLRD RE G +E +ED+ + P R + P +R Sbjct: 69 VCRICRNPGEADN--PLRYPCACSGSIKYVHQDCLLQWLNHSN--ARQCEVCKHAFSFSPVYAENAPARLPFQEFVVGMAMKACHVLQFFLRLSFVLSVWLLIIPFITFWIWRLAFVRSFGEAHRLFLGHLSTTI------------ILTDCLHGFLLSASIVFIFLGATSLRDYFRHLRELGGQEADREDDGDRNAARAPRRPVAPANR 262
BLAST of EWM25660.1 vs. NCBI_GenBank
Match: gi|1026080589|ref|XP_016539545.1| (PREDICTED: probable E3 ubiquitin ligase SUD1 isoform X2 [Capsicum annuum]) HSP 1 Score: 119.398 bits (298), Expect = 1.906e-26 Identity = 68/192 (35.42%), Postives = 101/192 (52.60%), Query Frame = 0 Query: 94 VCRVCHTEAEPTEGRPLYHPCLCRGSIKHVHQDCLMRWLQASSNTAKKCELCGASFAFTALYAPGAPAQLTSWEMVQGLMRKGAAFVPRLVKGGALSLLWLGVLPYVTQGAFQFFFATSWEEVEEVLDGVVGRLMRVEGGAVETGGRFLWTCLGGVALCVGIVLLSLTALSLRD-----REEGEEEERKEDE 280 VCR+C EP PL +PC C GSIK+VHQDCL++WL S+ A++CE+C +F+F+ +YA APA+L E V G+ K + ++ + +WL ++P++T ++ F S+ E + G + + L CL G L IV + L A SLRD RE G +E +EDE Sbjct: 69 VCRICRNPGEPDN--PLRYPCACSGSIKYVHQDCLLQWLNHSN--ARQCEVCKHAFSFSPVYAENAPARLPFQEFVVGMAMKACHVLQFFLRLSFVLSVWLLIIPFITFWIWRLAFVRSFGEAHRLFLGHLSTTV------------ILTDCLHGFLLSASIVFIFLGATSLRDYFRHLRELGGQEADREDE 244
BLAST of EWM25660.1 vs. NCBI_GenBank
Match: gi|1111024888|ref|XP_019263509.1| (PREDICTED: probable E3 ubiquitin ligase SUD1 isoform X1 [Nicotiana attenuata] >gi|1102290859|gb|OIT37102.1| putative e3 ubiquitin ligase sud1 [Nicotiana attenuata]) HSP 1 Score: 119.398 bits (298), Expect = 1.924e-26 Identity = 71/210 (33.81%), Postives = 107/210 (50.95%), Query Frame = 0 Query: 94 VCRVCHTEAEPTEGRPLYHPCLCRGSIKHVHQDCLMRWLQASSNTAKKCELCGASFAFTALYAPGAPAQLTSWEMVQGLMRKGAAFVPRLVKGGALSLLWLGVLPYVTQGAFQFFFATSWEEVEEVLDGVVGRLMRVEGGAVETGGRFLWTCLGGVALCVGIVLLSLTALSLRD-----REEGEEEERKEDEVMVWTGKLPSRLLVPQSR 298 VCR+C E PL +PC C GSIK VHQDCL++WL S+ A++CE+C +F+F+ +YA APA+L E V G+ K + ++ + +WL ++P++T ++ F S+ E + + G + + L CL G L IV + L A SLRD RE G +E +ED+ + P R VP +R Sbjct: 71 VCRICRNPGEADN--PLRYPCACSGSIKFVHQDCLLQWLNHSN--ARQCEVCKHAFSFSPVYAENAPARLPFQEFVVGMAMKACHVLQFFLRLSFVLSVWLIIIPFITFWIWRLAFVRSFGEAQRLFLGHLSTTI------------ILTDCLHGFLLSASIVFIFLGATSLRDYFRHLRELGGQEADREDDGDRNAARAPRRPAVPANR 264 The following BLAST results are available for this feature:
BLAST of EWM25660.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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