EWM25660.1, cds5011 (CDS) Nannochloropsis gaditana

Overview
NameEWM25660.1
Unique Namecds5011
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002464.1:951618..952421 -
Alignment locationCM002464.1:951155..951247 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM25660.1
Producte3 ubiquitin-protein ligase march6
Orig transcript idgnl|cribi|Naga_100546g1.2627.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002464.1supercontigCM002464.1:951618..952421 -
CM002464.1supercontigCM002464.1:951155..951247 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0005488binding
GO:0008270zinc ion binding
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Vocabulary: INTERPRO
TermDefinition
IPR013083Znf_RING/FYVE/PHD
IPR011016Znf_RING-CH
Homology
BLAST of EWM25660.1 vs. NCBI_GenBank
Match: gi|585107493|gb|EWM25660.1| (e3 ubiquitin-protein ligase march6 [Nannochloropsis gaditana])

HSP 1 Score: 611.683 bits (1576), Expect = 0.000e+0
Identity = 298/298 (100.00%), Postives = 298/298 (100.00%), Query Frame = 0
Query:    1 MSSSPTSPHHVTRNGGMCPSSDPCDHFSEEIATPASPMPEASQCAVLSPDTNTLADGSAQQGIAILNEDASVSGFGEVQQMDVDKGRGKEEDAVCRVCHTEAEPTEGRPLYHPCLCRGSIKHVHQDCLMRWLQASSNTAKKCELCGASFAFTALYAPGAPAQLTSWEMVQGLMRKGAAFVPRLVKGGALSLLWLGVLPYVTQGAFQFFFATSWEEVEEVLDGVVGRLMRVEGGAVETGGRFLWTCLGGVALCVGIVLLSLTALSLRDREEGEEEERKEDEVMVWTGKLPSRLLVPQSR 298
            MSSSPTSPHHVTRNGGMCPSSDPCDHFSEEIATPASPMPEASQCAVLSPDTNTLADGSAQQGIAILNEDASVSGFGEVQQMDVDKGRGKEEDAVCRVCHTEAEPTEGRPLYHPCLCRGSIKHVHQDCLMRWLQASSNTAKKCELCGASFAFTALYAPGAPAQLTSWEMVQGLMRKGAAFVPRLVKGGALSLLWLGVLPYVTQGAFQFFFATSWEEVEEVLDGVVGRLMRVEGGAVETGGRFLWTCLGGVALCVGIVLLSLTALSLRDREEGEEEERKEDEVMVWTGKLPSRLLVPQSR
Sbjct:    1 MSSSPTSPHHVTRNGGMCPSSDPCDHFSEEIATPASPMPEASQCAVLSPDTNTLADGSAQQGIAILNEDASVSGFGEVQQMDVDKGRGKEEDAVCRVCHTEAEPTEGRPLYHPCLCRGSIKHVHQDCLMRWLQASSNTAKKCELCGASFAFTALYAPGAPAQLTSWEMVQGLMRKGAAFVPRLVKGGALSLLWLGVLPYVTQGAFQFFFATSWEEVEEVLDGVVGRLMRVEGGAVETGGRFLWTCLGGVALCVGIVLLSLTALSLRDREEGEEEERKEDEVMVWTGKLPSRLLVPQSR 298          
BLAST of EWM25660.1 vs. NCBI_GenBank
Match: gi|553180669|ref|XP_005853442.1| (E3 ubiquitin-protein ligase MARCH6, partial [Nannochloropsis gaditana CCMP526] >gi|422295619|gb|EKU22918.1| E3 ubiquitin-protein ligase MARCH6, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 363.999 bits (933), Expect = 2.130e-125
Identity = 173/173 (100.00%), Postives = 173/173 (100.00%), Query Frame = 0
Query:    1 MSSSPTSPHHVTRNGGMCPSSDPCDHFSEEIATPASPMPEASQCAVLSPDTNTLADGSAQQGIAILNEDASVSGFGEVQQMDVDKGRGKEEDAVCRVCHTEAEPTEGRPLYHPCLCRGSIKHVHQDCLMRWLQASSNTAKKCELCGASFAFTALYAPGAPAQLTSWEMVQGLM 173
            MSSSPTSPHHVTRNGGMCPSSDPCDHFSEEIATPASPMPEASQCAVLSPDTNTLADGSAQQGIAILNEDASVSGFGEVQQMDVDKGRGKEEDAVCRVCHTEAEPTEGRPLYHPCLCRGSIKHVHQDCLMRWLQASSNTAKKCELCGASFAFTALYAPGAPAQLTSWEMVQGLM
Sbjct:    6 MSSSPTSPHHVTRNGGMCPSSDPCDHFSEEIATPASPMPEASQCAVLSPDTNTLADGSAQQGIAILNEDASVSGFGEVQQMDVDKGRGKEEDAVCRVCHTEAEPTEGRPLYHPCLCRGSIKHVHQDCLMRWLQASSNTAKKCELCGASFAFTALYAPGAPAQLTSWEMVQGLM 178          
BLAST of EWM25660.1 vs. NCBI_GenBank
Match: gi|565359175|ref|XP_006346393.1| (PREDICTED: probable E3 ubiquitin ligase SUD1 isoform X1 [Solanum tuberosum])

HSP 1 Score: 122.094 bits (305), Expect = 2.313e-27
Identity = 71/210 (33.81%), Postives = 108/210 (51.43%), Query Frame = 0
Query:   94 VCRVCHTEAEPTEGRPLYHPCLCRGSIKHVHQDCLMRWLQASSNTAKKCELCGASFAFTALYAPGAPAQLTSWEMVQGLMRKGAAFVPRLVKGGALSLLWLGVLPYVTQGAFQFFFATSWEEVEEVLDGVVGRLMRVEGGAVETGGRFLWTCLGGVALCVGIVLLSLTALSLRD-----REEGEEEERKEDEVMVWTGKLPSRLLVPQSR 298
            VCR+C    E     PL +PC C GSIK+VHQDCL++WL  S+  A++CE+C  +F+F+ +YA  APA+L   E V G+  K    +   ++   +  +WL ++P++T   ++  F  S+ E   +  G +   +             L  CL G  L   IV + L A SLRD     RE G +E  +ED+V     + P R + P +R
Sbjct:   69 VCRICRNPGEADN--PLRYPCACSGSIKYVHQDCLLQWLNHSN--ARQCEVCKHAFSFSPVYAENAPARLPFQEFVVGMAMKACHVLQFFLRLSFVLSVWLLIIPFITFWIWRLAFVRSFGEAHRLFLGHLSTTI------------ILTDCLHGFLLSASIVFIFLGATSLRDYFRHLRELGGQEADREDDVDRNAARAPRRPVAPANR 262          
BLAST of EWM25660.1 vs. NCBI_GenBank
Match: gi|971548724|ref|XP_015163756.1| (PREDICTED: probable E3 ubiquitin ligase SUD1 isoform X2 [Solanum tuberosum])

HSP 1 Score: 122.094 bits (305), Expect = 2.335e-27
Identity = 71/210 (33.81%), Postives = 108/210 (51.43%), Query Frame = 0
Query:   94 VCRVCHTEAEPTEGRPLYHPCLCRGSIKHVHQDCLMRWLQASSNTAKKCELCGASFAFTALYAPGAPAQLTSWEMVQGLMRKGAAFVPRLVKGGALSLLWLGVLPYVTQGAFQFFFATSWEEVEEVLDGVVGRLMRVEGGAVETGGRFLWTCLGGVALCVGIVLLSLTALSLRD-----REEGEEEERKEDEVMVWTGKLPSRLLVPQSR 298
            VCR+C    E     PL +PC C GSIK+VHQDCL++WL  S+  A++CE+C  +F+F+ +YA  APA+L   E V G+  K    +   ++   +  +WL ++P++T   ++  F  S+ E   +  G +   +             L  CL G  L   IV + L A SLRD     RE G +E  +ED+V     + P R + P +R
Sbjct:   69 VCRICRNPGEADN--PLRYPCACSGSIKYVHQDCLLQWLNHSN--ARQCEVCKHAFSFSPVYAENAPARLPFQEFVVGMAMKACHVLQFFLRLSFVLSVWLLIIPFITFWIWRLAFVRSFGEAHRLFLGHLSTTI------------ILTDCLHGFLLSASIVFIFLGATSLRDYFRHLRELGGQEADREDDVDRNAARAPRRPVAPANR 262          
BLAST of EWM25660.1 vs. NCBI_GenBank
Match: gi|697183943|ref|XP_009600994.1| (PREDICTED: probable E3 ubiquitin ligase SUD1 isoform X2 [Nicotiana tomentosiformis])

HSP 1 Score: 120.939 bits (302), Expect = 7.157e-27
Identity = 71/210 (33.81%), Postives = 108/210 (51.43%), Query Frame = 0
Query:   94 VCRVCHTEAEPTEGRPLYHPCLCRGSIKHVHQDCLMRWLQASSNTAKKCELCGASFAFTALYAPGAPAQLTSWEMVQGLMRKGAAFVPRLVKGGALSLLWLGVLPYVTQGAFQFFFATSWEEVEEVLDGVVGRLMRVEGGAVETGGRFLWTCLGGVALCVGIVLLSLTALSLRD-----REEGEEEERKEDEVMVWTGKLPSRLLVPQSR 298
            VCR+C    E     PL +PC C GSIK+VHQDCL++WL  S+  A++CE+C  +F+F+ +YA  APA+L   E V G+  K    +   ++   +  +WL ++P++T   ++  F  S+ E + +  G +   +             L  CL G  L   IV + L A SLRD     RE G +E  +ED+      + P R  VP +R
Sbjct:   67 VCRICRNPGEADN--PLRYPCACSGSIKYVHQDCLLQWLNHSN--ARQCEVCKHAFSFSPVYAENAPARLPFQEFVVGMAMKACHVLQFFLRLSFVLSVWLIIIPFITFWIWRLAFVRSFGEAQRLFLGHLSTTI------------ILTDCLHGFLLSASIVFIFLGATSLRDYFRHLRELGGQEADREDDGDRNAARAPRRPAVPANR 260          
BLAST of EWM25660.1 vs. NCBI_GenBank
Match: gi|697183941|ref|XP_009600993.1| (PREDICTED: probable E3 ubiquitin ligase SUD1 isoform X1 [Nicotiana tomentosiformis])

HSP 1 Score: 120.939 bits (302), Expect = 7.159e-27
Identity = 71/210 (33.81%), Postives = 108/210 (51.43%), Query Frame = 0
Query:   94 VCRVCHTEAEPTEGRPLYHPCLCRGSIKHVHQDCLMRWLQASSNTAKKCELCGASFAFTALYAPGAPAQLTSWEMVQGLMRKGAAFVPRLVKGGALSLLWLGVLPYVTQGAFQFFFATSWEEVEEVLDGVVGRLMRVEGGAVETGGRFLWTCLGGVALCVGIVLLSLTALSLRD-----REEGEEEERKEDEVMVWTGKLPSRLLVPQSR 298
            VCR+C    E     PL +PC C GSIK+VHQDCL++WL  S+  A++CE+C  +F+F+ +YA  APA+L   E V G+  K    +   ++   +  +WL ++P++T   ++  F  S+ E + +  G +   +             L  CL G  L   IV + L A SLRD     RE G +E  +ED+      + P R  VP +R
Sbjct:   67 VCRICRNPGEADN--PLRYPCACSGSIKYVHQDCLLQWLNHSN--ARQCEVCKHAFSFSPVYAENAPARLPFQEFVVGMAMKACHVLQFFLRLSFVLSVWLIIIPFITFWIWRLAFVRSFGEAQRLFLGHLSTTI------------ILTDCLHGFLLSASIVFIFLGATSLRDYFRHLRELGGQEADREDDGDRNAARAPRRPAVPANR 260          
BLAST of EWM25660.1 vs. NCBI_GenBank
Match: gi|1026770150|gb|OAE29992.1| (hypothetical protein AXG93_669s1440 [Marchantia polymorpha subsp. ruderalis])

HSP 1 Score: 119.783 bits (299), Expect = 1.763e-26
Identity = 67/188 (35.64%), Postives = 105/188 (55.85%), Query Frame = 0
Query:   80 QMDVDKGRGKEEDAVCRVCHTEAEPTEGRPLYHPCLCRGSIKHVHQDCLMRWLQASSNTAKKCELCGASFAFTALYAPGAPAQLTSWEMVQGLMRKGAAFVPRLVKGGALSLLWLGVLPYVTQGAFQFFFATSWEEVEEVLDGVVGRLMRVEGGAVETGGRFLWTCLGGVALCVGIVLLSLTALSLRD 267
            ++   K   ++E+ VCR+C T  +  +  PLY+PC C GSIK+VHQDCL++WL  S+  A++CE+C  +F+F+ +YA  AP++L   E++ GL+ K A  V    +   +  +WL  +P+ T   ++F F  S+ E  ++    + R          T G  L  CL G  L  GIV + L A SLR+
Sbjct:   39 RLAASKNAAEDEEDVCRICRTPGD--DESPLYYPCACSGSIKYVHQDCLLQWLNHSN--ARQCEVCKHAFSFSPVYAENAPSRLPFQELLLGLVMKAARGVRFFCRLTFVLSVWLLFIPFTTFWIWRFTFVRSFNEAHKLF---ISRF---------TPGLLLTDCLHGFLLSAGIVFIFLGATSLRE 210          
BLAST of EWM25660.1 vs. NCBI_GenBank
Match: gi|723665263|ref|XP_010315222.1| (PREDICTED: probable E3 ubiquitin ligase SUD1 [Solanum lycopersicum])

HSP 1 Score: 119.783 bits (299), Expect = 1.767e-26
Identity = 70/210 (33.33%), Postives = 107/210 (50.95%), Query Frame = 0
Query:   94 VCRVCHTEAEPTEGRPLYHPCLCRGSIKHVHQDCLMRWLQASSNTAKKCELCGASFAFTALYAPGAPAQLTSWEMVQGLMRKGAAFVPRLVKGGALSLLWLGVLPYVTQGAFQFFFATSWEEVEEVLDGVVGRLMRVEGGAVETGGRFLWTCLGGVALCVGIVLLSLTALSLRD-----REEGEEEERKEDEVMVWTGKLPSRLLVPQSR 298
            VCR+C    E     PL +PC C GSIK+VHQDCL++WL  S+  A++CE+C  +F+F+ +YA  APA+L   E V G+  K    +   ++   +  +WL ++P++T   ++  F  S+ E   +  G +   +             L  CL G  L   IV + L A SLRD     RE G +E  +ED+      + P R + P +R
Sbjct:   69 VCRICRNPGEADN--PLRYPCACSGSIKYVHQDCLLQWLNHSN--ARQCEVCKHAFSFSPVYAENAPARLPFQEFVVGMAMKACHVLQFFLRLSFVLSVWLLIIPFITFWIWRLAFVRSFGEAHRLFLGHLSTTI------------ILTDCLHGFLLSASIVFIFLGATSLRDYFRHLRELGGQEADREDDGDRNAARAPRRPVAPANR 262          
BLAST of EWM25660.1 vs. NCBI_GenBank
Match: gi|1026080589|ref|XP_016539545.1| (PREDICTED: probable E3 ubiquitin ligase SUD1 isoform X2 [Capsicum annuum])

HSP 1 Score: 119.398 bits (298), Expect = 1.906e-26
Identity = 68/192 (35.42%), Postives = 101/192 (52.60%), Query Frame = 0
Query:   94 VCRVCHTEAEPTEGRPLYHPCLCRGSIKHVHQDCLMRWLQASSNTAKKCELCGASFAFTALYAPGAPAQLTSWEMVQGLMRKGAAFVPRLVKGGALSLLWLGVLPYVTQGAFQFFFATSWEEVEEVLDGVVGRLMRVEGGAVETGGRFLWTCLGGVALCVGIVLLSLTALSLRD-----REEGEEEERKEDE 280
            VCR+C    EP    PL +PC C GSIK+VHQDCL++WL  S+  A++CE+C  +F+F+ +YA  APA+L   E V G+  K    +   ++   +  +WL ++P++T   ++  F  S+ E   +  G +   +             L  CL G  L   IV + L A SLRD     RE G +E  +EDE
Sbjct:   69 VCRICRNPGEPDN--PLRYPCACSGSIKYVHQDCLLQWLNHSN--ARQCEVCKHAFSFSPVYAENAPARLPFQEFVVGMAMKACHVLQFFLRLSFVLSVWLLIIPFITFWIWRLAFVRSFGEAHRLFLGHLSTTV------------ILTDCLHGFLLSASIVFIFLGATSLRDYFRHLRELGGQEADREDE 244          
BLAST of EWM25660.1 vs. NCBI_GenBank
Match: gi|1111024888|ref|XP_019263509.1| (PREDICTED: probable E3 ubiquitin ligase SUD1 isoform X1 [Nicotiana attenuata] >gi|1102290859|gb|OIT37102.1| putative e3 ubiquitin ligase sud1 [Nicotiana attenuata])

HSP 1 Score: 119.398 bits (298), Expect = 1.924e-26
Identity = 71/210 (33.81%), Postives = 107/210 (50.95%), Query Frame = 0
Query:   94 VCRVCHTEAEPTEGRPLYHPCLCRGSIKHVHQDCLMRWLQASSNTAKKCELCGASFAFTALYAPGAPAQLTSWEMVQGLMRKGAAFVPRLVKGGALSLLWLGVLPYVTQGAFQFFFATSWEEVEEVLDGVVGRLMRVEGGAVETGGRFLWTCLGGVALCVGIVLLSLTALSLRD-----REEGEEEERKEDEVMVWTGKLPSRLLVPQSR 298
            VCR+C    E     PL +PC C GSIK VHQDCL++WL  S+  A++CE+C  +F+F+ +YA  APA+L   E V G+  K    +   ++   +  +WL ++P++T   ++  F  S+ E + +  G +   +             L  CL G  L   IV + L A SLRD     RE G +E  +ED+      + P R  VP +R
Sbjct:   71 VCRICRNPGEADN--PLRYPCACSGSIKFVHQDCLLQWLNHSN--ARQCEVCKHAFSFSPVYAENAPARLPFQEFVVGMAMKACHVLQFFLRLSFVLSVWLIIIPFITFWIWRLAFVRSFGEAQRLFLGHLSTTI------------ILTDCLHGFLLSASIVFIFLGATSLRDYFRHLRELGGQEADREDDGDRNAARAPRRPAVPANR 264          
The following BLAST results are available for this feature:
BLAST of EWM25660.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585107493|gb|EWM25660.1|0.000e+0100.00e3 ubiquitin-protein ligase march6 [Nannochloropsi... [more]
gi|553180669|ref|XP_005853442.1|2.130e-125100.00E3 ubiquitin-protein ligase MARCH6, partial [Nanno... [more]
gi|565359175|ref|XP_006346393.1|2.313e-2733.81PREDICTED: probable E3 ubiquitin ligase SUD1 isofo... [more]
gi|971548724|ref|XP_015163756.1|2.335e-2733.81PREDICTED: probable E3 ubiquitin ligase SUD1 isofo... [more]
gi|697183943|ref|XP_009600994.1|7.157e-2733.81PREDICTED: probable E3 ubiquitin ligase SUD1 isofo... [more]
gi|697183941|ref|XP_009600993.1|7.159e-2733.81PREDICTED: probable E3 ubiquitin ligase SUD1 isofo... [more]
gi|1026770150|gb|OAE29992.1|1.763e-2635.64hypothetical protein AXG93_669s1440 [Marchantia po... [more]
gi|723665263|ref|XP_010315222.1|1.767e-2633.33PREDICTED: probable E3 ubiquitin ligase SUD1 [Sola... [more]
gi|1026080589|ref|XP_016539545.1|1.906e-2635.42PREDICTED: probable E3 ubiquitin ligase SUD1 isofo... [more]
gi|1111024888|ref|XP_019263509.1|1.924e-2633.81PREDICTED: probable E3 ubiquitin ligase SUD1 isofo... [more]
back to top
Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna5023rna5023Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications