rna5017, rna5017 (mRNA) Nannochloropsis gaditana

Overview
Namerna5017
Unique Namerna5017
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1356
Alignment locationCM002464.1:941226..943246 -

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Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100355g3.9417.mrna
Orig protein idgnl|cribi|Naga_100355g3.9417
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002464.1supercontigCM002464.1:941226..943246 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100355g3gene4845Nannochloropsis gaditana (N. gaditana B-31)gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM25667.1cds5005Nannochloropsis gaditana (N. gaditana B-31)CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna5017rna5017-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna5017 ID=rna5017|Name=rna5017|organism=Nannochloropsis gaditana|type=mRNA|length=1356bp
ATGGTGGCCTGTGCTGGGGAGCTCGAAGGATGCTGCGATAGCCTCAGCGC
CTCAGAGTACCTGACAGAGGACAAAATCCATGATGCCGGAGATGAAGAAA
CGCCAAGACCAAATGTTTACTACTACGATGCTCACTTCTTGTTGCACTCA
GCCGAAACACTGGTGTCTGTAGTGGCACGTGCTGCAGATGGCACTGCGGG
TCACATTGGTAACAAACGACGTGGTAGAAGGACGTGTAGCAAGCCGAAGA
CTCACAACGGACGGTGGACAAATGAGGAGCACGTCCTCTTCTTGCAGGGC
CTTGACGCTCATGGGAAAGACTGGAAACAAATACACAAGAAACTGACCAC
TCGGAGCCTTGGCCAAATCCGGAGTCACGCCCAGAAGTATTTCCAGAAGG
TGGAGCAGGCGAAGCGGAGCGGGAGGCTCGGCGACGGCGATTTTCAGCTC
CTTATGGACGGCAAACGCATGGTCTTCTCAAGGGGTGGGAGGAGACCGAC
AGCTTCGGACCTTGAGGGTGACCACCTGCATCAAGACGAGGAGAGCAGCC
TCGCTGAGCACCAGACCGACGGGTCCTTTGACGGGCTACCTCAGAATATG
CACAATCCCGTCCCGTTCCTCGAGCCTCATTATCGCCACCAGCAGCAGCA
ACACCAATATCCCAACCATTGGCAGCAGCAGCAGTGCCCTAGCTCGCCCT
CGTCTACTTGCTGCACACCTCGTGGCGGTGTCTGGAGGACCATGGCCGGC
AAGGGCTGGCTCCCCGACACCTGCCCCGTGAGCAGCATAGAGGAGGAGAT
CGACGCGGTCGTCAAGTCCGAGCTCGAACACGTCGGCGTGAGCTGGGGCG
GGAGGGAGGGAGGGGCGAGGGAAGAAAGGAACGAGGACGAGGTCGAGGAC
GCGCTGGCGATGGACTTCTTGCGGGCCACGTCCCACCTCTTCCCCTTGGA
GGAGCTCAGGTCCTTTGTCACCGGCGTGGCGTCGGACGTGGGAAGCCACC
GGGAAGATGGGACGTGCCCGGCGCCGCATGCCATGGCGATGGACGAGCTT
GTTGGCCATTCGCCTGGGCCCACGGTACCGGCAGGGTGCTGTACAGGAAA
TAACGGCAACGTGCAAGGGGCAAACTGGGCGTGGACAGGGACAGGGGCGT
CGGTGCCTGCAGACACGGATCCCTTGACGGTCGGACCACTCATGTCAAGC
TGCGCCGTCGCCTCGGACGACGCGAGTCACCGTGGGAAGTCTGAGTCCTT
TCTACGTCCTTTTAAGTCGGGATGTTGGGTTAAGGTATCTTCATTAGTTG
TAGGACGAAATACCAACAGGAGAGATGCAACAGATTTGAATAGAACCTTT
AAATGA
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protein sequence of rna5017

>rna5017-protein ID=rna5017-protein|Name=rna5017|organism=Nannochloropsis gaditana|type=polypeptide|length=399bp
MLTTRSLGQIRSHAQKYFQKVEQAKRSGRLGDGDFQLLMDGKRMVFSRGG
RRPTGASNALIQEAGGSRDKRRATGCDESAGTGVTGSLPSPCASSISSLT
SLASESSRTSTPSPVSLASQRTLSDATVSSCTTTPSLPFPFDEASDLEGN
PLHQDQESNLAEHQTDGSFDGLSQNTHNPVPFLDLRHRHQQQQHQYPDQC
QQQQCPSSPSSTCCSPRGGVWRTMAGKGWLPDISPVSSIEEETDAVVESE
REDVGVSWGGREGGAREERNEDEVEDALAMDFLRATSHLFPLEELRSFVT
GVASDVGSHREDGTFPAPHAMAMDELVGHSPGSTVPAGYCRGNGGNVQGA
NWAWTGTGASVPADTDPLTVGPLMSSCAVASDDASHRGKSESFLRPNGS
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mRNA from alignment at CM002464.1:941226..943246-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna5017 ID=rna5017|Name=rna5017|organism=Nannochloropsis gaditana|type=mRNA|length=2021bp|location=Sequence derived from alignment at CM002464.1:941226..943246- (Nannochloropsis gaditana)
CGTAGCCACGAGATGGTAGCGTTGAAGTGCAATCCTGTATGAGATCCCCC
CCGTCCCCCCCCCACATTATTTCACTGGGATAGCAGAGTCAGCCCGCGAG
CACTTGTCGATAACTCCACATCACCTCTGTGCTTCCCTAGCTCAATCCAG
CAACCCTTTATCCCCTCCCTTCCTTTTGCCTTCTCAGGACGGTGGACGAA
TGAGGAGCACGTCCTCTTCTTGCAGGGCCTTGACGCTCATGGGAAAGACT
GCAAACAAATACACAAGATGCTGACCACTCGGAGCCTTGGCCAAATCCGG
AGTCACGCCCAGAAGTATTTCCAGAAGGTGGAGCAGGCGAAGCGGAGCGG
GAGGCTCGGCGACGGCGATTTTCAGCTCCTTATGGACGGTAAACGCATGG
TCTTCTCAAGGGGTGGAAGGAGACCGACAGGTGCCTCCAATGCGCTTATC
CAGGAGGCGGGCGGGTCCCGAGACAAGAGGCGTGCCACCGGGTGCGACGA
GAGCGCAGGCACCGGAGTGACGGGGTCGTTGCCTTCCCCTTGTGCGTCCT
CCATCTCCTCCCTCACCTCCTTGGCCTCTGAAAGCTCTCGTACAAGTACT
CCCAGTCCCGTGTCTCTCGCCTCACAAAGGACGCTGTCGGACGCCACCGT
GTCCTCTTGCACCACCACACCCTCCCTCCCCTTCCCCTTTGACGAAGCTT
CGGACCTTGAGGGTAACCCCCTGCATCAAGATCAGGAGAGCAACCTCGCT
GAGCACCAGACCGACGGGTCCTTTGACGGGCTATCTCAGAATACGCACAA
TCCCGTCCCGTTCCTCGATCTTCGCCATCGCCACCAGCAGCAGCAACACC
AATATCCCGACCAGTGTCAGCAGCAGCAGTGCCCTAGCTCGCCCTCGTCT
ACTTGCTGCTCACCTCGTGGCGGTGTCTGGAGGACCATGGCCGGCAAGGG
CTGGCTCCCCGACATCAGCCCCGTGAGCAGCATAGAGGAGGAGACCGACG
CGGTCGTCGAGTCCGAGCGCGAAGACGTCGGCGTGAGCTGGGGCGGGAGG
GAGGGAGGGGCGAGGGAAGAAAGGAACGAGGACGAGGTCGAGGACGCGCT
GGCGATGGACTTCCTGCGGGCCACGTCCCACCTCTTCCCCTTGGAGGAGC
TCAGGTCCTTTGTCACCGGCGTGGCGTCGGACGTGGGAAGCCACCGGGAA
GATGGGACGTTCCCGGCGCCGCATGCCATGGCGATGGACGAGCTTGTAGG
CCATTCGCCTGGGTCCACGGTACCGGCAGGGTACTGTCGAGGAAATGGCG
GCAACGTGCAAGGGGCAAACTGGGCGTGGACAGGGACAGGGGCGTCGGTG
CCTGCAGACACGGATCCCTTGACGGTCGGACCACTCATGTCAAGCTGCGC
CGTCGCCTCGGACGACGCGAGTCACCGTGGGAAGTCTGAGTCCTTTCTAC
GTCCTAATGGGTCGTGATGTCCGTCGCTCCCCTTGTGATCTCCTTTCTTC
CTCTGTCTGCTGCCGTGGAGTTAGACGAGGCGATCGGATCTTCTCAGGAG
GAGGGGAGATAGAAGGGGGGGTTAATCTTTGTCGGGAAATGACGAGCATT
TCATTCGATGAGCTCGCAATTCTATGACAGGTTGAAGCACGAGTAATATG
ACACGGGCTATGATTAAGTGAGGAGAAGGAGAATCTATTAGGTGTTTGAA
GGCATTTTTCTTGTGAAGACGAACGAGACCGGCTGGAAAGATGTGACAGA
TTTGAAGAGAACCTTGAATGATAGACTGTAGTCAATCGCGTACGATGCAA
TTGAGCAAAGCATCCACACCTGGATATCTATGTGTCATGGGATTTGCAAA
GCAGGTCTTCATGATATTGAAGCTAGATGGCGAGGAATATCACGATCCTC
CTCAAGTAAAACTGCTGGGTAATCATTGGATGAGAATTTCTGATAAAGTA
CTCCTTCATGGGGTTGAAGGTACTTGGCGAGGAGAAGTACAACTTTTCTC
AAGTAAACTGCTAGGCAATCA
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Coding sequence (CDS) from alignment at CM002464.1:941226..943246-

>rna5017 ID=rna5017|Name=rna5017|organism=Nannochloropsis gaditana|type=CDS|length=1200bp|location=Sequence derived from alignment at CM002464.1:941226..943246- (Nannochloropsis gaditana)
ATGCTGACCACTCGGAGCCTTGGCCAAATCCGGAGTCACGCCCAGAAGTA
TTTCCAGAAGGTGGAGCAGGCGAAGCGGAGCGGGAGGCTCGGCGACGGCG
ATTTTCAGCTCCTTATGGACGGTAAACGCATGGTCTTCTCAAGGGGTGGA
AGGAGACCGACAGGTGCCTCCAATGCGCTTATCCAGGAGGCGGGCGGGTC
CCGAGACAAGAGGCGTGCCACCGGGTGCGACGAGAGCGCAGGCACCGGAG
TGACGGGGTCGTTGCCTTCCCCTTGTGCGTCCTCCATCTCCTCCCTCACC
TCCTTGGCCTCTGAAAGCTCTCGTACAAGTACTCCCAGTCCCGTGTCTCT
CGCCTCACAAAGGACGCTGTCGGACGCCACCGTGTCCTCTTGCACCACCA
CACCCTCCCTCCCCTTCCCCTTTGACGAAGCTTCGGACCTTGAGGGTAAC
CCCCTGCATCAAGATCAGGAGAGCAACCTCGCTGAGCACCAGACCGACGG
GTCCTTTGACGGGCTATCTCAGAATACGCACAATCCCGTCCCGTTCCTCG
ATCTTCGCCATCGCCACCAGCAGCAGCAACACCAATATCCCGACCAGTGT
CAGCAGCAGCAGTGCCCTAGCTCGCCCTCGTCTACTTGCTGCTCACCTCG
TGGCGGTGTCTGGAGGACCATGGCCGGCAAGGGCTGGCTCCCCGACATCA
GCCCCGTGAGCAGCATAGAGGAGGAGACCGACGCGGTCGTCGAGTCCGAG
CGCGAAGACGTCGGCGTGAGCTGGGGCGGGAGGGAGGGAGGGGCGAGGGA
AGAAAGGAACGAGGACGAGGTCGAGGACGCGCTGGCGATGGACTTCCTGC
GGGCCACGTCCCACCTCTTCCCCTTGGAGGAGCTCAGGTCCTTTGTCACC
GGCGTGGCGTCGGACGTGGGAAGCCACCGGGAAGATGGGACGTTCCCGGC
GCCGCATGCCATGGCGATGGACGAGCTTGTAGGCCATTCGCCTGGGTCCA
CGGTACCGGCAGGGTACTGTCGAGGAAATGGCGGCAACGTGCAAGGGGCA
AACTGGGCGTGGACAGGGACAGGGGCGTCGGTGCCTGCAGACACGGATCC
CTTGACGGTCGGACCACTCATGTCAAGCTGCGCCGTCGCCTCGGACGACG
CGAGTCACCGTGGGAAGTCTGAGTCCTTTCTACGTCCTAATGGGTCGTGA
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Synonyms
Publications