EWM25667.1, cds5005 (CDS) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	EWM25667.1
Unique Name	cds5005
Type	CDS
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Alignment location	CM002464.1:941780..942979 -

Link to JBrowse

Properties


Property Name	Value
Protein id	EWM25667.1
Product	hypothetical protein
Orig transcript id	gnl\|cribi\|Naga_100355g3.9417.mrna
Gbkey	CDS

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002464.1	supercontig	CM002464.1:941780..942979 -

Analyses

This CDS is derived from or has results from the following analyses


Analysis Name	Date Performed
GO annotation for N. gaditana B31	2020-04-08
BLAST analysis for N. gaditana B-31	2020-04-07
InterPro analysis for N. gaditana B-31	2020-04-06
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

The following terms have been associated with this CDS:

Vocabulary: **Molecular Function**
Term	Definition
GO:0003677	DNA binding

Vocabulary: **Cellular Component**
Term	Definition
GO:0005634	nucleus

Homology

[Close]

BLAST of EWM25667.1 vs. NCBI_GenBank
Match: gi|585107503|gb|EWM25667.1| (hypothetical protein Naga_100355g3 [Nannochloropsis gaditana])

HSP 1 Score: 816.224 bits (2107), Expect = 0.000e+0
Identity = 399/399 (100.00%), Postives = 399/399 (100.00%), Query Frame = 0

Query:    1 MLTTRSLGQIRSHAQKYFQKVEQAKRSGRLGDGDFQLLMDGKRMVFSRGGRRPTGASNALIQEAGGSRDKRRATGCDESAGTGVTGSLPSPCASSISSLTSLASESSRTSTPSPVSLASQRTLSDATVSSCTTTPSLPFPFDEASDLEGNPLHQDQESNLAEHQTDGSFDGLSQNTHNPVPFLDLRHRHQQQQHQYPDQCQQQQCPSSPSSTCCSPRGGVWRTMAGKGWLPDISPVSSIEEETDAVVESEREDVGVSWGGREGGAREERNEDEVEDALAMDFLRATSHLFPLEELRSFVTGVASDVGSHREDGTFPAPHAMAMDELVGHSPGSTVPAGYCRGNGGNVQGANWAWTGTGASVPADTDPLTVGPLMSSCAVASDDASHRGKSESFLRPNGS 399
            MLTTRSLGQIRSHAQKYFQKVEQAKRSGRLGDGDFQLLMDGKRMVFSRGGRRPTGASNALIQEAGGSRDKRRATGCDESAGTGVTGSLPSPCASSISSLTSLASESSRTSTPSPVSLASQRTLSDATVSSCTTTPSLPFPFDEASDLEGNPLHQDQESNLAEHQTDGSFDGLSQNTHNPVPFLDLRHRHQQQQHQYPDQCQQQQCPSSPSSTCCSPRGGVWRTMAGKGWLPDISPVSSIEEETDAVVESEREDVGVSWGGREGGAREERNEDEVEDALAMDFLRATSHLFPLEELRSFVTGVASDVGSHREDGTFPAPHAMAMDELVGHSPGSTVPAGYCRGNGGNVQGANWAWTGTGASVPADTDPLTVGPLMSSCAVASDDASHRGKSESFLRPNGS
Sbjct:    1 MLTTRSLGQIRSHAQKYFQKVEQAKRSGRLGDGDFQLLMDGKRMVFSRGGRRPTGASNALIQEAGGSRDKRRATGCDESAGTGVTGSLPSPCASSISSLTSLASESSRTSTPSPVSLASQRTLSDATVSSCTTTPSLPFPFDEASDLEGNPLHQDQESNLAEHQTDGSFDGLSQNTHNPVPFLDLRHRHQQQQHQYPDQCQQQQCPSSPSSTCCSPRGGVWRTMAGKGWLPDISPVSSIEEETDAVVESEREDVGVSWGGREGGAREERNEDEVEDALAMDFLRATSHLFPLEELRSFVTGVASDVGSHREDGTFPAPHAMAMDELVGHSPGSTVPAGYCRGNGGNVQGANWAWTGTGASVPADTDPLTVGPLMSSCAVASDDASHRGKSESFLRPNGS 399

[Close]

BLAST of EWM25667.1 vs. NCBI_GenBank
Match: gi|585107504|gb|EWM25668.1| (SANT/Myb domain protein [Nannochloropsis gaditana])

HSP 1 Score: 454.907 bits (1169), Expect = 2.027e-155
Identity = 228/253 (90.12%), Postives = 236/253 (93.28%), Query Frame = 0

Query:  144 ASDLEGNPLHQDQESNLAEHQTDGSFDGLSQNTHNPVPFLDLRHRHQQQQHQYPDQCQQQQCPSSPSSTCCSPRGGVWRTMAGKGWLPDISPVSSIEEETDAVVESEREDVGVSWGGREGGAREERNEDEVEDALAMDFLRATSHLFPLEELRSFVTGVASDVGSHREDGTFPAPHAMAMDELVGHSPGSTVPAGYCRGNGGNVQGANWAWTGTGASVPADTDPLTVGPLMSSCAVASDDASHRGKSESFLRP 396
            ASDLEG+ LHQD+ES+LAEHQTDGSFDGL QN HNPVPFL+  +RHQQQQHQYP+  QQQQCPSSPSSTCC+PRGGVWRTMAGKGWLPD  PVSSIEEE DAVV+SE E VGVSWGGREGGAREERNEDEVEDALAMDFLRATSHLFPLEELRSFVTGVASDVGSHREDGT PAPHAMAMDELVGHSPG TVPAG C GN GNVQGANWAWTGTGASVPADTDPLTVGPLMSSCAVASDDASHRGKSESFLRP
Sbjct:  168 ASDLEGDHLHQDEESSLAEHQTDGSFDGLPQNMHNPVPFLEPHYRHQQQQHQYPNHWQQQQCPSSPSSTCCTPRGGVWRTMAGKGWLPDTCPVSSIEEEIDAVVKSELEHVGVSWGGREGGAREERNEDEVEDALAMDFLRATSHLFPLEELRSFVTGVASDVGSHREDGTCPAPHAMAMDELVGHSPGPTVPAGCCTGNNGNVQGANWAWTGTGASVPADTDPLTVGPLMSSCAVASDDASHRGKSESFLRP 420

HSP 2 Score: 112.849 bits (281), Expect = 8.377e-24
Identity = 53/55 (96.36%), Postives = 54/55 (98.18%), Query Frame = 0

Query:    2 LTTRSLGQIRSHAQKYFQKVEQAKRSGRLGDGDFQLLMDGKRMVFSRGGRRPTGA 56
            LTTRSLGQIRSHAQKYFQKVEQAKRSGRLGDGDFQLLMDGKRMVFSRGGRRPT +
Sbjct:  115 LTTRSLGQIRSHAQKYFQKVEQAKRSGRLGDGDFQLLMDGKRMVFSRGGRRPTAS 169

[Close]

BLAST of EWM25667.1 vs. NCBI_GenBank
Match: gi|432998484|gb|AGB13670.1| (MYB360 [Nannochloropsis sp. YJH-2012])

HSP 1 Score: 71.633 bits (174), Expect = 3.500e-10
Identity = 36/73 (49.32%), Postives = 48/73 (65.75%), Query Frame = 0

Query:    1 MLTTRSLGQIRSHAQKYFQKVEQAKRSGRLGDGDFQLLMDGKRMVFSRGGRRPTGASNALIQEAGGSRDKRRA 73
            ++ TRS  Q+RSHAQKYFQ++ QAK SGR+G+ DFQ +MDGKRM F    +R +G        A G+  +R A
Sbjct:   99 LVGTRSQPQVRSHAQKYFQRITQAKESGRIGESDFQFMMDGKRM-FKSAQKRGSGGRKENKTGAQGTNQRRDA 170

The following BLAST results are available for this feature:

BLAST of EWM25667.1 vs. NCBI_GenBank

BLAST of EWM25667.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 3


Match Name	E-value	Identity	Description
gi\|585107503\|gb\|EWM25667.1\|	0.000e+0	100.00	hypothetical protein Naga_100355g3 [Nannochloropsi...	[more]
gi\|585107504\|gb\|EWM25668.1\|	2.027e-155	90.12	SANT/Myb domain protein [Nannochloropsis gaditana]	[more]
gi\|432998484\|gb\|AGB13670.1\|	3.500e-10	49.32	MYB360 [Nannochloropsis sp. YJH-2012]	[more]

Relationships

This CDS is a part of the following mRNA feature(s):


Feature Name	Unique Name	Species	Type
rna5017	rna5017	Nannochloropsis gaditana (N. gaditana B-31)	mRNA

Sequences

Synonyms

Publications