rna5014, rna5014 (mRNA) Nannochloropsis gaditana

Overview
Namerna5014
Unique Namerna5014
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1557
Alignment locationCM002464.1:929625..930414 -

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_101185g1.10085.mrna
Orig protein idgnl|cribi|Naga_101185g1.10085
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002464.1supercontigCM002464.1:929625..930414 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_101185g1gene4842Nannochloropsis gaditana (N. gaditana B-31)gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM25671.1cds5002Nannochloropsis gaditana (N. gaditana B-31)CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna5014rna5014-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna5014 ID=rna5014|Name=rna5014|organism=Nannochloropsis gaditana|type=mRNA|length=1557bp
CGCACTGGGGGGCAGCGATTAAAATGTTCATGATCCAAAGGCCCGTTACC
ACGAACAAAACACATCTTCGAAGAAGCCATATTTATCGTATTCTCTACGA
CGTGAGCTATGTGGATACCCGATTGAATATTTATGTGGTAGGAATGAACT
GCTTTGAGTTTTCCAGGCCATTTTTTTTCTTGCGATAAGGGGAGACTGTA
ACCTCGCAAACACATAACAAAGCCAAAAACATGACTTGTACGGTCCTGTC
CGCAAAATGGGGCTTCAAATCCATTGAACAGCGTGTTTAGCTAGCACCAT
TCTGTCATTTTCCTCCCAACCTTTGCAAAAACATCTTTCACCAAGGTGGA
CGGATAAAAAACGGAATGAGCCGGCAGACCGCCAGGACGACAGTTCAATG
AGGGGGGCCAACAAATATTCACACATACCCAGACCCCGTCGTCTACTTAG
TAATGTATGATACCACTAGGTCTACGTGATCACTTGAGACGGCCGTGTGC
AATGGTTGCACCAGGTGTGCGTGCAGGGGGGCGGTCAAGAAAAGCAATGC
TGCATGTAGCCTCTCCTTTCCTCCGTCGTCGTGCCCTGGCCTGTTTTTTT
CCGTCTTCGTTGCCCCCTCCTTCGTCCTGGCAGGGAGATCGCGCCATCCT
GTCTTCCATTGGCTCCACCCTCCCCAAATCCTTTGTTGGCGATCTGAGAA
GAAGACTACTGCGTCGGACCTACCACGGCACGGTCCCGCGGGCGAAAGAC
GTGACCATGACGTGGCACGTCGAAGGTGAGGCGATAGCCGTCACCGCGCC
GGAGGGAAAGACGTTATTGGAGGTGGCGCATGACAACGACATCGAATTGG
AAGGTGCTTGCGGTGGAGAGTTGGCCTGCTCCACCTGCCACGTCGTTTTT
ACCCCCGAATTGTACGCGCGCCTGCCGGCAAAGAAGGAGGAAGAGGAGGA
CATGCTGGATCTGGCCTGGGGCCTCACCGAGACCTCTCGCCTCGGCTGCC
AGATCAAAGTGACGCCCCTGTTGGAAAACGCCGTTATTACAATACCAGAA
GAGACGAATAACATGCTGGGAGGGGAGGATGAGGGGAAGGGAGGGGCGGC
GGGGGGACAGGGAGAGCCTTGGGCGAAGTAAGGGGCTGCTTCCGCCCTCC
CTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCTTCCCTCCCT
CCTTCCCTTTCTGCCTCCCTTCCTCTCCTTAATTTAATCCACGATCCTGG
CGGGAAATGCGAGGCAGGAGGGCATGCGCCTCGCACGCTTGGATGAGTGG
ATGACGCCGTCTCTGGGGATGAAAAGCAACCAACCACGTTCCCGGACCGG
ACGCCTGAGGCATTTGAGATCACGACGCTTGTGAAGGACGAGCACATTTC
TTACCAACAAACAAACAACAACATACTGCTCTGAGTTTATCCTCACCCCA
TCTCTTCATCATTTCGATCAAGCTTGATTTAATGCTGTATTTAATAAGCC
CTAGCGAGAGGGGTTGAAGCCCCTGTGAACGGGCAGGCATCAGGACCCTC
CCCCTCC
back to top

protein sequence of rna5014

>rna5014-protein ID=rna5014-protein|Name=rna5014|organism=Nannochloropsis gaditana|type=polypeptide|length=191bp
PYPAGKSSNQSATMWWSLPSLLITTLGFRRNGDTRKGREEEGGRGKTKGR
RKRRKITFSLSDAARESGAGAFPPHHTTSFVDRDHIEITGVVGLFDDSGP
TQVEVLPRSHSLPSSLPPSLPPSRPPSFPQPSSAPASSSDKESSSRITPP
LTSHPQLHRPSSSSSSSSSSFSFVERLREWKKWGGGLAGSN
back to top

mRNA from alignment at CM002464.1:929625..930414-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna5014 ID=rna5014|Name=rna5014|organism=Nannochloropsis gaditana|type=mRNA|length=790bp|location=Sequence derived from alignment at CM002464.1:929625..930414- (Nannochloropsis gaditana)
CCCTATCCAGCGGGAAAGTCCTCCAACCAGTCAGCCACGATGTGGTGGTC
CCTTCCTTCCCTCCTCATCACCACCCTGGGCTTCCGCAGGAACGGCGACA
CCAGGAAAGGGAGGGAAGAAGAAGGAGGGAGGGGGAAGACCAAGGGGAGG
AGGAAGAGGAGGAAGATCACCTTTTCCCTCTCCGATGCCGCCCGAGAAAG
CGGAGCCGGCGCCTTCCCTCCCCATCACACCACGTCCTTTGTGGACCGGG
ACCACATCGAGATAACCGGCGTCGTCGGCCTTTTCGATGATTCCGGACCC
ACCCAAGTGGAAGTCCTGCCCCGCAGCCACTCTCTCCCTTCCTCCCTTCC
TCCCTCCCTCCCGCCCTCCCGCCCTCCCTCCTTCCCTCAGCCGAGCAGCG
CGCCCGCATCCAGTTCTGACAAGGAGTCTTCCTCCCGCATCACCCCGCCC
TTAACCTCCCATCCCCAACTGCATCGTCCCTCCTCCTCCTCTTCCTCTTC
CTCTTCCTCCTTCTCCTTTGTGGAGCGACTGAGGGAGTGGAAGAAGTGGG
GAGGGGGGCTGGCGGGAAGTAACTGAAAGCATGCGGAGGAGGAAAAGGAG
GAAGGTGGGATCGCGATGAAATTGGAGGGGTCAGGAGTGAGGAGGGAGGG
GGAGGGTCCTGATGCCTGCCCGTTCACAGGGGCTTCAACCCCTCTCGCTA
GGGCTTATTAAATACAGCATTAAATCAAGCTTGATCGAAATGATGAAGAG
ATGGGGTGAGGATAAACTCAGAGCAGTATGTTGTTGTTTG
back to top

Coding sequence (CDS) from alignment at CM002464.1:929625..930414-

>rna5014 ID=rna5014|Name=rna5014|organism=Nannochloropsis gaditana|type=CDS|length=576bp|location=Sequence derived from alignment at CM002464.1:929625..930414- (Nannochloropsis gaditana)
CCCTATCCAGCGGGAAAGTCCTCCAACCAGTCAGCCACGATGTGGTGGTC
CCTTCCTTCCCTCCTCATCACCACCCTGGGCTTCCGCAGGAACGGCGACA
CCAGGAAAGGGAGGGAAGAAGAAGGAGGGAGGGGGAAGACCAAGGGGAGG
AGGAAGAGGAGGAAGATCACCTTTTCCCTCTCCGATGCCGCCCGAGAAAG
CGGAGCCGGCGCCTTCCCTCCCCATCACACCACGTCCTTTGTGGACCGGG
ACCACATCGAGATAACCGGCGTCGTCGGCCTTTTCGATGATTCCGGACCC
ACCCAAGTGGAAGTCCTGCCCCGCAGCCACTCTCTCCCTTCCTCCCTTCC
TCCCTCCCTCCCGCCCTCCCGCCCTCCCTCCTTCCCTCAGCCGAGCAGCG
CGCCCGCATCCAGTTCTGACAAGGAGTCTTCCTCCCGCATCACCCCGCCC
TTAACCTCCCATCCCCAACTGCATCGTCCCTCCTCCTCCTCTTCCTCTTC
CTCTTCCTCCTTCTCCTTTGTGGAGCGACTGAGGGAGTGGAAGAAGTGGG
GAGGGGGGCTGGCGGGAAGTAACTGA
back to top
Synonyms
Publications