rna5001, rna5001 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna5001
Unique Name	rna5001
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	174
Alignment location	CM002464.1:884889..886124 -

Link to JBrowse

Properties


Property Name	Value
Product	ribonucleases p mrp protein subunit pop1
Orig transcript id	gnl\|cribi\|Naga_100735g1.7556.mrna
Orig protein id	gnl\|cribi\|Naga_100735g1.7556
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002464.1	supercontig	CM002464.1:884889..886124 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100735g1	gene4830	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM25684.1	cds4989	Nannochloropsis gaditana (N. gaditana B-31)	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna5001	rna5001-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002464.1:884889..886124-
coding sequence from alignment at CM002464.1:884889..886124-

mRNA sequence

>rna5001 ID=rna5001|Name=rna5001|organism=Nannochloropsis gaditana|type=mRNA|length=174bp
ATGGTGCGACGAGGACCAAGCGTGTCAATGGGACAGTGGGCGCTGCTTCT
TTTGCCCATACTTTTCCTCTATGAAGGGCTACTGGGCTCCGGAGTACCAA
GGAGCACAACCCTCTCTTGTACCATGCTTATTGTTTGCGCCACTGCGGTT
CCAACCATGCCCGAGGGTGCGTAA

protein sequence of rna5001

>rna5001-protein ID=rna5001-protein|Name=rna5001|organism=Nannochloropsis gaditana|type=polypeptide|length=354bp
MKTTRHRPSFLSLGQISSLLASELNGTLSESWLQSLPHTRRLETHVWHSK
RYPRMLDRWGYRLAYALSRKPSKAPLRALSEQCCLHDASYIRVLELQATH
RKDILTVLAAFMDPSDATTLGSDDKMAGNQMGEAILYRRGAFPSGMLGPV
RYLWRPRGRVEGWGSEWHVWIWAHPAFATRLKEELEEATGGEGGREGGRE
DGKRMKIKLVPDLLFFEMRGPLSRRSIEMACRPVFPFNAGTRNGLGGEEE
EVAVKEARKEEKGEEWLPERLEHGSVLCLSVIDPRERRGGREGGGEQERG
GGGGGGGGGGGGGGGGGGEGNRGAEGLKRGESNKMQLEGGAKKWGGGRRR
CRGS

mRNA from alignment at CM002464.1:884889..886124-

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna5001 ID=rna5001|Name=rna5001|organism=Nannochloropsis gaditana|type=mRNA|length=1236bp|location=Sequence derived from alignment at CM002464.1:884889..886124- (Nannochloropsis gaditana)
ATGAAAACTACACGTCATCGTCCTTCCTTCCTCTCTCTTGGTCAAATTTC
TTCCCTCCTTGCCAGCGAACTTAACGGCACGTTATCCGAAAGCTGGTTGC
AGTCCCTCCCGCACACCCGGCGTTTAGAAACCCATGTATGGCACAGTAAG
CGGTACCCTCGAATGCTCGACCGGTGGGGTTACCGGCTCGCCTACGCCCT
CAGTCGCAAGCCCAGCAAGGCTCCTTTGCGGGCCCTGTCGGAGCAATGTT
GCCTGCACGACGCCTCTTACATTCGGGTATTGGAGTTGCAGGCGACTCAT
CGAAAGGACATTTTGACCGTGTTGGCGGCCTTTATGGACCCGAGTGATGC
GACAACCTTGGGGAGCGATGACAAAATGGCGGGAAATCAGATGGGAGAAG
CCATTCTGTACCGGAGGGGAGCTTTCCCCAGTGGGATGTTGGGGCCGGTG
AGGTACTTGTGGAGGCCAAGAGGGAGGGTGGAAGGGTGGGGGAGCGAGTG
GCATGTATGGATATGGGCACATCCTGCCTTTGCGACCCGGTTGAAGGAGG
AATTGGAGGAGGCAACTGGGGGGGAGGGCGGGAGGGAGGGCGGGAGGGAG
GACGGGAAGCGGATGAAGATCAAGCTTGTCCCAGACCTTCTCTTTTTCGA
AATGCGAGGCCCTCTCTCCCGGAGATCGATCGAAATGGCTTGTAGGCCCG
TCTTTCCTTTCAATGCTGGCACTAGGAACGGTTTGGGAGGGGAGGAAGAG
GAGGTGGCGGTAAAGGAAGCGAGAAAGGAGGAAAAGGGGGAGGAATGGCT
GCCGGAAAGGTTAGAACATGGGTCTGTGCTTTGTTTGTCGGTAATTGATC
CGCGGGAAAGGCGAGGAGGGAGGGAAGGAGGGGGGGAACAAGAAAGAGGA
GGAGGAGGAGGGGGAGGAGGGGGAGGAGGAGGAGGAGGAGGAGGAGGAGG
AGGAGAAGGAAACAGAGGCGCAGAAGGACTTAAAAGGGGAGAAAGTAATA
AGATGCAATTGGAGGGGGGGGCAAAGAAATGGGGGGGAGGGAGGAGGAGG
TGTCGAGGAAGTTGAAATGGAGACAGGCGCGGGAAGTGAGGAGCCACCAG
GCTTGCCGGGCCGCCTCGCTTTCCCCTCCCTGTGGAGGGGGCAGGACCGG
AAAGCAGCGAGAGAACGAGCGCGTCAGCGGCCCGACCACGTCGTAAATGC
CGAGAGGGAACGGAGCAGACGGGCAGAGAGGACCTG

Coding sequence (CDS) from alignment at CM002464.1:884889..886124-

>rna5001 ID=rna5001|Name=rna5001|organism=Nannochloropsis gaditana|type=CDS|length=1065bp|location=Sequence derived from alignment at CM002464.1:884889..886124- (Nannochloropsis gaditana)
ATGAAAACTACACGTCATCGTCCTTCCTTCCTCTCTCTTGGTCAAATTTC
TTCCCTCCTTGCCAGCGAACTTAACGGCACGTTATCCGAAAGCTGGTTGC
AGTCCCTCCCGCACACCCGGCGTTTAGAAACCCATGTATGGCACAGTAAG
CGGTACCCTCGAATGCTCGACCGGTGGGGTTACCGGCTCGCCTACGCCCT
CAGTCGCAAGCCCAGCAAGGCTCCTTTGCGGGCCCTGTCGGAGCAATGTT
GCCTGCACGACGCCTCTTACATTCGGGTATTGGAGTTGCAGGCGACTCAT
CGAAAGGACATTTTGACCGTGTTGGCGGCCTTTATGGACCCGAGTGATGC
GACAACCTTGGGGAGCGATGACAAAATGGCGGGAAATCAGATGGGAGAAG
CCATTCTGTACCGGAGGGGAGCTTTCCCCAGTGGGATGTTGGGGCCGGTG
AGGTACTTGTGGAGGCCAAGAGGGAGGGTGGAAGGGTGGGGGAGCGAGTG
GCATGTATGGATATGGGCACATCCTGCCTTTGCGACCCGGTTGAAGGAGG
AATTGGAGGAGGCAACTGGGGGGGAGGGCGGGAGGGAGGGCGGGAGGGAG
GACGGGAAGCGGATGAAGATCAAGCTTGTCCCAGACCTTCTCTTTTTCGA
AATGCGAGGCCCTCTCTCCCGGAGATCGATCGAAATGGCTTGTAGGCCCG
TCTTTCCTTTCAATGCTGGCACTAGGAACGGTTTGGGAGGGGAGGAAGAG
GAGGTGGCGGTAAAGGAAGCGAGAAAGGAGGAAAAGGGGGAGGAATGGCT
GCCGGAAAGGTTAGAACATGGGTCTGTGCTTTGTTTGTCGGTAATTGATC
CGCGGGAAAGGCGAGGAGGGAGGGAAGGAGGGGGGGAACAAGAAAGAGGA
GGAGGAGGAGGGGGAGGAGGGGGAGGAGGAGGAGGAGGAGGAGGAGGAGG
AGGAGAAGGAAACAGAGGCGCAGAAGGACTTAAAAGGGGAGAAAGTAATA
AGATGCAATTGGAGGGGGGGGCAAAGAAATGGGGGGGAGGGAGGAGGAGG
TGTCGAGGAAGTTGA

Synonyms

Publications