EWM25684.1, cds4989 (CDS) Nannochloropsis gaditana
|
Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM25684.1 vs. NCBI_GenBank
Match: gi|585107534|gb|EWM25684.1| (ribonucleases p mrp protein subunit pop1 [Nannochloropsis gaditana]) HSP 1 Score: 701.434 bits (1809), Expect = 0.000e+0 Identity = 354/354 (100.00%), Postives = 354/354 (100.00%), Query Frame = 0
Query: 1 MKTTRHRPSFLSLGQISSLLASELNGTLSESWLQSLPHTRRLETHVWHSKRYPRMLDRWGYRLAYALSRKPSKAPLRALSEQCCLHDASYIRVLELQATHRKDILTVLAAFMDPSDATTLGSDDKMAGNQMGEAILYRRGAFPSGMLGPVRYLWRPRGRVEGWGSEWHVWIWAHPAFATRLKEELEEATGGEGGREGGREDGKRMKIKLVPDLLFFEMRGPLSRRSIEMACRPVFPFNAGTRNGLGGEEEEVAVKEARKEEKGEEWLPERLEHGSVLCLSVIDPRERRGGREGGGEQERGGGGGGGGGGGGGGGGGGGEGNRGAEGLKRGESNKMQLEGGAKKWGGGRRRCRGS 354
MKTTRHRPSFLSLGQISSLLASELNGTLSESWLQSLPHTRRLETHVWHSKRYPRMLDRWGYRLAYALSRKPSKAPLRALSEQCCLHDASYIRVLELQATHRKDILTVLAAFMDPSDATTLGSDDKMAGNQMGEAILYRRGAFPSGMLGPVRYLWRPRGRVEGWGSEWHVWIWAHPAFATRLKEELEEATGGEGGREGGREDGKRMKIKLVPDLLFFEMRGPLSRRSIEMACRPVFPFNAGTRNGLGGEEEEVAVKEARKEEKGEEWLPERLEHGSVLCLSVIDPRERRGGREGGGEQERGGGGGGGGGGGGGGGGGGGEGNRGAEGLKRGESNKMQLEGGAKKWGGGRRRCRGS
Sbjct: 1 MKTTRHRPSFLSLGQISSLLASELNGTLSESWLQSLPHTRRLETHVWHSKRYPRMLDRWGYRLAYALSRKPSKAPLRALSEQCCLHDASYIRVLELQATHRKDILTVLAAFMDPSDATTLGSDDKMAGNQMGEAILYRRGAFPSGMLGPVRYLWRPRGRVEGWGSEWHVWIWAHPAFATRLKEELEEATGGEGGREGGREDGKRMKIKLVPDLLFFEMRGPLSRRSIEMACRPVFPFNAGTRNGLGGEEEEVAVKEARKEEKGEEWLPERLEHGSVLCLSVIDPRERRGGREGGGEQERGGGGGGGGGGGGGGGGGGGEGNRGAEGLKRGESNKMQLEGGAKKWGGGRRRCRGS 354
BLAST of EWM25684.1 vs. NCBI_GenBank
Match: gi|1101383354|dbj|GAU99433.1| (hypothetical protein RvY_10438 [Ramazzottius varieornatus]) HSP 1 Score: 112.464 bits (280), Expect = 1.745e-23 Identity = 79/249 (31.73%), Postives = 120/249 (48.19%), Query Frame = 0
Query: 38 HTRR------LETHVWHSKRYPRMLDRWGYRLAYALSRKPSKAPLRALSEQCCLHDASYIRVLELQATHRKDILTVLAAFMDPSDATTLGSDDKMAGNQMGEAILYRRGAFPSGMLGPVRYLWRPRGRVEGWGSEWHVWIWAHPAFATRLKEELEEATGGEGGREGGREDGKRMKIKLVPDLLFFEMRGPLSRRSIEMACRPVFPFNAGTRNGLGGEEEEVAVKE-----ARKEEKGEEWLPERLEHGS 275
+TRR LETHVWH+KR+ M+ +WG ++A+ + K +A RA SE C + D SY+ LEL+ + +L+ L P T +D +AG+ G +LY G +P+ +LGPVR+ W P G S+W + IWAHP+ + L +EL L FEM+ S + A AG ++ + E+E+V +KE A +EK E + + LE+ S
Sbjct: 139 YTRRSATNGWLETHVWHAKRF-HMIPKWGRKIAHYPNDKGFRAAFRASSEHCLMTDMSYLVCLELEGP-QAALLSGLQTLTSPEIGRTFAYNDYLAGHLEGSCLLYETGQYPNKVLGPVRFSWFPTGETNTHTSQWKLHIWAHPSCSAGLVDEL---------------------------LRIFEMKAVTSGGA---AASAQTNETAGEQSSMTLEDEDVDMKELPSATAVGKEKAAELVVQSLEYAS 355
BLAST of EWM25684.1 vs. NCBI_GenBank
Match: gi|1160138047|ref|XP_020370201.1| (ribonucleases P/MRP protein subunit POP1 isoform X2 [Rhincodon typus]) HSP 1 Score: 110.923 bits (276), Expect = 5.897e-23 Identity = 55/144 (38.19%), Postives = 76/144 (52.78%), Query Frame = 0
Query: 42 LETHVWHSKRYPRMLDRWGYRLAYALSRKPSKAPLRALSEQCCLHDASYIRVLELQATHRKDILTVLAAFMDPSDATTLGSDDKMAGNQMGEAILYRRGAFPSGMLGPVRYLWRPRGRVEGWGSEWHVWIWAHPAFATRLKEEL 185
LETH+WH+KR+ M+ +WGY L + K +A RA+++QC L D SY LEL T ++L LA T S ++G G +LY+ +P LGPV +LWRP+ + E +WIW HPA L EL
Sbjct: 209 LETHIWHAKRF-HMVKKWGYCLGNKPTTKSYRACYRAMTKQCLLQDLSYYCCLELNGTE-NNLLQALARLSSTDAGATFASVSCLSGKCQGSLVLYKADQYPEKPLGPVTFLWRPKTQSESSSGNRQLWIWTHPALKMELLTEL 350
BLAST of EWM25684.1 vs. NCBI_GenBank
Match: gi|1160138045|ref|XP_020370200.1| (ribonucleases P/MRP protein subunit POP1 isoform X1 [Rhincodon typus]) HSP 1 Score: 110.923 bits (276), Expect = 6.028e-23 Identity = 55/144 (38.19%), Postives = 76/144 (52.78%), Query Frame = 0
Query: 42 LETHVWHSKRYPRMLDRWGYRLAYALSRKPSKAPLRALSEQCCLHDASYIRVLELQATHRKDILTVLAAFMDPSDATTLGSDDKMAGNQMGEAILYRRGAFPSGMLGPVRYLWRPRGRVEGWGSEWHVWIWAHPAFATRLKEEL 185
LETH+WH+KR+ M+ +WGY L + K +A RA+++QC L D SY LEL T ++L LA T S ++G G +LY+ +P LGPV +LWRP+ + E +WIW HPA L EL
Sbjct: 219 LETHIWHAKRF-HMVKKWGYCLGNKPTTKSYRACYRAMTKQCLLQDLSYYCCLELNGTE-NNLLQALARLSSTDAGATFASVSCLSGKCQGSLVLYKADQYPEKPLGPVTFLWRPKTQSESSSGNRQLWIWTHPALKMELLTEL 360
BLAST of EWM25684.1 vs. NCBI_GenBank
Match: gi|768921130|ref|XP_003965915.2| (PREDICTED: ribonucleases P/MRP protein subunit POP1 [Takifugu rubripes]) HSP 1 Score: 108.997 bits (271), Expect = 2.735e-22 Identity = 57/145 (39.31%), Postives = 78/145 (53.79%), Query Frame = 0
Query: 42 LETHVWHSKRYPRMLDRWGYRLAYALSRKPSKAPLRALSEQCCLHDASYIRVLELQATHRKDILTVLAAFMDPSDATTLGSDDKMAGNQMGEAILYRRGAFPSGMLGPVRYLWRPRGRVEGWGSEWHVWIWAHPAFATRLKEELE 186
LETH+WH+KR+ M+ +WGY L + K + RA+S C L D SY +ELQ K +L L+ T + ++G + G ++YR G +PS LGPV +LWRPR R G H+WIWAHP L EL+
Sbjct: 182 LETHIWHAKRF-HMVKKWGYCLGDRPTYKCYRPCYRAMSSHCLLQDLSYYCCIELQGEEDK-LLLALSQLTSKETGPTFAAISSLSGQRQGSLVVYRAGEYPSQPLGPVTFLWRPRARGSG---HRHLWIWAHPTMKQDLLPELQ 321
BLAST of EWM25684.1 vs. NCBI_GenBank
Match: gi|1126201805|ref|XP_019634265.1| (PREDICTED: ribonucleases P/MRP protein subunit POP1-like isoform X2 [Branchiostoma belcheri]) HSP 1 Score: 107.071 bits (266), Expect = 8.507e-22 Identity = 65/198 (32.83%), Postives = 103/198 (52.02%), Query Frame = 0
Query: 38 HTRRLETHVWHSKRYPRMLDRWGYRLAYALSRKPSKAPLRALSEQCCLHDASYIRVLELQATHRKDILTVLAAF--MDPSDATTLGSDDKMAGNQMGEAILYRRGAFPSGMLGPVRYLWRPR---GRVEGWGSEWHVWIWAHPAFATRLKEELEEATGGEGGREGGREDGKRMKIKLVPDLLFFEMRGPLSRRSIEMA 230
H LETHVWH+KR+ M++RWGYRL K +A RA+ C + D SY +EL + + +IL++LA F +D + ++ + G G AILYRR ++P+ LGPV Y++RP+ + S +W+W HPA + +EL++ R D +L+ F++ G L+ ++E A
Sbjct: 169 HVTWLETHVWHAKRF-HMVNRWGYRLPDYPCDKSQRAAYRAMCHHCLIQDISYYGCIELTGS-KDNILSLLAHFTHLDKGGSISMFYSE---GKVEGTAILYRRDSYPNHTLGPVTYMFRPQTENSKDTFATSSCQLWLWTHPACTQDILQELQQGMSDTSVRVQSIGD----------ELVRFQLTGQLAAATLESA 351
BLAST of EWM25684.1 vs. NCBI_GenBank
Match: gi|1126201803|ref|XP_019634263.1| (PREDICTED: ribonucleases P/MRP protein subunit POP1-like isoform X1 [Branchiostoma belcheri]) HSP 1 Score: 107.071 bits (266), Expect = 8.514e-22 Identity = 65/198 (32.83%), Postives = 103/198 (52.02%), Query Frame = 0
Query: 38 HTRRLETHVWHSKRYPRMLDRWGYRLAYALSRKPSKAPLRALSEQCCLHDASYIRVLELQATHRKDILTVLAAF--MDPSDATTLGSDDKMAGNQMGEAILYRRGAFPSGMLGPVRYLWRPR---GRVEGWGSEWHVWIWAHPAFATRLKEELEEATGGEGGREGGREDGKRMKIKLVPDLLFFEMRGPLSRRSIEMA 230
H LETHVWH+KR+ M++RWGYRL K +A RA+ C + D SY +EL + + +IL++LA F +D + ++ + G G AILYRR ++P+ LGPV Y++RP+ + S +W+W HPA + +EL++ R D +L+ F++ G L+ ++E A
Sbjct: 170 HVTWLETHVWHAKRF-HMVNRWGYRLPDYPCDKSQRAAYRAMCHHCLIQDISYYGCIELTGS-KDNILSLLAHFTHLDKGGSISMFYSE---GKVEGTAILYRRDSYPNHTLGPVTYMFRPQTENSKDTFATSSCQLWLWTHPACTQDILQELQQGMSDTSVRVQSIGD----------ELVRFQLTGQLAAATLESA 352
BLAST of EWM25684.1 vs. NCBI_GenBank
Match: gi|348588357|ref|XP_003479933.1| (PREDICTED: ribonucleases P/MRP protein subunit POP1 [Cavia porcellus]) HSP 1 Score: 106.686 bits (265), Expect = 1.444e-21 Identity = 53/145 (36.55%), Postives = 78/145 (53.79%), Query Frame = 0
Query: 42 LETHVWHSKRYPRMLDRWGYRLAYALSRKPSKAPLRALSEQCCLHDASYIRVLELQATHRKDILTVLAAFMDPSDATTLGSDDKMAGNQMGEAILYRRGAFPSGMLGPVRYLWRPRGRVEGWGSEWHVWIWAHPAFATRLKEELE 186
LETH+WH+KR+ M+ RWGY L + K +A RA++ +C L D SY LEL+ ++IL L+ T + ++G + G +LYR +P MLGPV ++W+P G G +WIW HP + EEL+
Sbjct: 202 LETHIWHAKRF-HMVKRWGYCLGERPTLKSHRACYRAMTHRCLLQDLSYYCCLELKGKE-EEILKALSQMCSLDAGLTFAAVHCLSGKRQGSVVLYRANKYPREMLGPVTFIWKPEGTPSGTSGSRQLWIWLHPTVKQDILEELK 344
BLAST of EWM25684.1 vs. NCBI_GenBank
Match: gi|765144392|ref|XP_011483194.1| (ribonucleases P/MRP protein subunit POP1 isoform X1 [Oryzias latipes]) HSP 1 Score: 105.916 bits (263), Expect = 2.316e-21 Identity = 59/145 (40.69%), Postives = 79/145 (54.48%), Query Frame = 0
Query: 42 LETHVWHSKRYPRMLDRWGYRLAYALSRKPSKAPLRALSEQCCLHDASYIRVLELQATHRKDILTVLAAFMDPSDATTLGSDDKMAGNQMGEAILYRRGAFPSGMLGPVRYLWRPRGRVEGWGSEWHVWIWAHPAFATRLKEELE 186
LETH+WH+KR+ M+ +WGYRL + K + RA+S C L D SY +ELQ +LT L+ T + ++G + G +YR G +PS LGPV +LWRPR EG S +WIWAHPA L EL+
Sbjct: 179 LETHIWHAKRF-HMVKKWGYRLGDRPTCKCYRPCYRAMSSHCLLLDISYYCCIELQG-EEDTLLTALSQLTSKETGPTFAAALCLSGCRQGSVTVYRAGQYPSHPLGPVTFLWRPRA--EGSASR-QLWIWAHPALKQDLLPELQ 318
BLAST of EWM25684.1 vs. NCBI_GenBank
Match: gi|765144394|ref|XP_011483195.1| (ribonucleases P/MRP protein subunit POP1 isoform X2 [Oryzias latipes]) HSP 1 Score: 105.916 bits (263), Expect = 2.541e-21 Identity = 59/145 (40.69%), Postives = 79/145 (54.48%), Query Frame = 0
Query: 42 LETHVWHSKRYPRMLDRWGYRLAYALSRKPSKAPLRALSEQCCLHDASYIRVLELQATHRKDILTVLAAFMDPSDATTLGSDDKMAGNQMGEAILYRRGAFPSGMLGPVRYLWRPRGRVEGWGSEWHVWIWAHPAFATRLKEELE 186
LETH+WH+KR+ M+ +WGYRL + K + RA+S C L D SY +ELQ +LT L+ T + ++G + G +YR G +PS LGPV +LWRPR EG S +WIWAHPA L EL+
Sbjct: 179 LETHIWHAKRF-HMVKKWGYRLGDRPTCKCYRPCYRAMSSHCLLLDISYYCCIELQG-EEDTLLTALSQLTSKETGPTFAAALCLSGCRQGSVTVYRAGQYPSHPLGPVTFLWRPRA--EGSASR-QLWIWAHPALKQDLLPELQ 318 The following BLAST results are available for this feature:
BLAST of EWM25684.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
|