EWM25684.1, cds4989 (CDS) Nannochloropsis gaditana

Overview
NameEWM25684.1
Unique Namecds4989
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002464.1:885060..886124 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM25684.1
Productribonucleases p mrp protein subunit pop1
Orig transcript idgnl|cribi|Naga_100735g1.7556.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002464.1supercontigCM002464.1:885060..886124 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Cellular Component
TermDefinition
GO:0005730nucleolus
Vocabulary: Molecular Function
TermDefinition
GO:0004518nuclease activity
GO:0004526ribonuclease P activity
Vocabulary: Biological Process
TermDefinition
GO:0001682tRNA 5'-leader removal
Vocabulary: INTERPRO
TermDefinition
IPR009723RNase_P/MRP_POP1
Homology
BLAST of EWM25684.1 vs. NCBI_GenBank
Match: gi|585107534|gb|EWM25684.1| (ribonucleases p mrp protein subunit pop1 [Nannochloropsis gaditana])

HSP 1 Score: 701.434 bits (1809), Expect = 0.000e+0
Identity = 354/354 (100.00%), Postives = 354/354 (100.00%), Query Frame = 0
Query:    1 MKTTRHRPSFLSLGQISSLLASELNGTLSESWLQSLPHTRRLETHVWHSKRYPRMLDRWGYRLAYALSRKPSKAPLRALSEQCCLHDASYIRVLELQATHRKDILTVLAAFMDPSDATTLGSDDKMAGNQMGEAILYRRGAFPSGMLGPVRYLWRPRGRVEGWGSEWHVWIWAHPAFATRLKEELEEATGGEGGREGGREDGKRMKIKLVPDLLFFEMRGPLSRRSIEMACRPVFPFNAGTRNGLGGEEEEVAVKEARKEEKGEEWLPERLEHGSVLCLSVIDPRERRGGREGGGEQERGGGGGGGGGGGGGGGGGGGEGNRGAEGLKRGESNKMQLEGGAKKWGGGRRRCRGS 354
            MKTTRHRPSFLSLGQISSLLASELNGTLSESWLQSLPHTRRLETHVWHSKRYPRMLDRWGYRLAYALSRKPSKAPLRALSEQCCLHDASYIRVLELQATHRKDILTVLAAFMDPSDATTLGSDDKMAGNQMGEAILYRRGAFPSGMLGPVRYLWRPRGRVEGWGSEWHVWIWAHPAFATRLKEELEEATGGEGGREGGREDGKRMKIKLVPDLLFFEMRGPLSRRSIEMACRPVFPFNAGTRNGLGGEEEEVAVKEARKEEKGEEWLPERLEHGSVLCLSVIDPRERRGGREGGGEQERGGGGGGGGGGGGGGGGGGGEGNRGAEGLKRGESNKMQLEGGAKKWGGGRRRCRGS
Sbjct:    1 MKTTRHRPSFLSLGQISSLLASELNGTLSESWLQSLPHTRRLETHVWHSKRYPRMLDRWGYRLAYALSRKPSKAPLRALSEQCCLHDASYIRVLELQATHRKDILTVLAAFMDPSDATTLGSDDKMAGNQMGEAILYRRGAFPSGMLGPVRYLWRPRGRVEGWGSEWHVWIWAHPAFATRLKEELEEATGGEGGREGGREDGKRMKIKLVPDLLFFEMRGPLSRRSIEMACRPVFPFNAGTRNGLGGEEEEVAVKEARKEEKGEEWLPERLEHGSVLCLSVIDPRERRGGREGGGEQERGGGGGGGGGGGGGGGGGGGEGNRGAEGLKRGESNKMQLEGGAKKWGGGRRRCRGS 354          
BLAST of EWM25684.1 vs. NCBI_GenBank
Match: gi|1101383354|dbj|GAU99433.1| (hypothetical protein RvY_10438 [Ramazzottius varieornatus])

HSP 1 Score: 112.464 bits (280), Expect = 1.745e-23
Identity = 79/249 (31.73%), Postives = 120/249 (48.19%), Query Frame = 0
Query:   38 HTRR------LETHVWHSKRYPRMLDRWGYRLAYALSRKPSKAPLRALSEQCCLHDASYIRVLELQATHRKDILTVLAAFMDPSDATTLGSDDKMAGNQMGEAILYRRGAFPSGMLGPVRYLWRPRGRVEGWGSEWHVWIWAHPAFATRLKEELEEATGGEGGREGGREDGKRMKIKLVPDLLFFEMRGPLSRRSIEMACRPVFPFNAGTRNGLGGEEEEVAVKE-----ARKEEKGEEWLPERLEHGS 275
            +TRR      LETHVWH+KR+  M+ +WG ++A+  + K  +A  RA SE C + D SY+  LEL+   +  +L+ L     P    T   +D +AG+  G  +LY  G +P+ +LGPVR+ W P G      S+W + IWAHP+ +  L +EL                           L  FEM+   S  +   A        AG ++ +  E+E+V +KE     A  +EK  E + + LE+ S
Sbjct:  139 YTRRSATNGWLETHVWHAKRF-HMIPKWGRKIAHYPNDKGFRAAFRASSEHCLMTDMSYLVCLELEGP-QAALLSGLQTLTSPEIGRTFAYNDYLAGHLEGSCLLYETGQYPNKVLGPVRFSWFPTGETNTHTSQWKLHIWAHPSCSAGLVDEL---------------------------LRIFEMKAVTSGGA---AASAQTNETAGEQSSMTLEDEDVDMKELPSATAVGKEKAAELVVQSLEYAS 355          
BLAST of EWM25684.1 vs. NCBI_GenBank
Match: gi|1160138047|ref|XP_020370201.1| (ribonucleases P/MRP protein subunit POP1 isoform X2 [Rhincodon typus])

HSP 1 Score: 110.923 bits (276), Expect = 5.897e-23
Identity = 55/144 (38.19%), Postives = 76/144 (52.78%), Query Frame = 0
Query:   42 LETHVWHSKRYPRMLDRWGYRLAYALSRKPSKAPLRALSEQCCLHDASYIRVLELQATHRKDILTVLAAFMDPSDATTLGSDDKMAGNQMGEAILYRRGAFPSGMLGPVRYLWRPRGRVEGWGSEWHVWIWAHPAFATRLKEEL 185
            LETH+WH+KR+  M+ +WGY L    + K  +A  RA+++QC L D SY   LEL  T   ++L  LA         T  S   ++G   G  +LY+   +P   LGPV +LWRP+ + E       +WIW HPA    L  EL
Sbjct:  209 LETHIWHAKRF-HMVKKWGYCLGNKPTTKSYRACYRAMTKQCLLQDLSYYCCLELNGTE-NNLLQALARLSSTDAGATFASVSCLSGKCQGSLVLYKADQYPEKPLGPVTFLWRPKTQSESSSGNRQLWIWTHPALKMELLTEL 350          
BLAST of EWM25684.1 vs. NCBI_GenBank
Match: gi|1160138045|ref|XP_020370200.1| (ribonucleases P/MRP protein subunit POP1 isoform X1 [Rhincodon typus])

HSP 1 Score: 110.923 bits (276), Expect = 6.028e-23
Identity = 55/144 (38.19%), Postives = 76/144 (52.78%), Query Frame = 0
Query:   42 LETHVWHSKRYPRMLDRWGYRLAYALSRKPSKAPLRALSEQCCLHDASYIRVLELQATHRKDILTVLAAFMDPSDATTLGSDDKMAGNQMGEAILYRRGAFPSGMLGPVRYLWRPRGRVEGWGSEWHVWIWAHPAFATRLKEEL 185
            LETH+WH+KR+  M+ +WGY L    + K  +A  RA+++QC L D SY   LEL  T   ++L  LA         T  S   ++G   G  +LY+   +P   LGPV +LWRP+ + E       +WIW HPA    L  EL
Sbjct:  219 LETHIWHAKRF-HMVKKWGYCLGNKPTTKSYRACYRAMTKQCLLQDLSYYCCLELNGTE-NNLLQALARLSSTDAGATFASVSCLSGKCQGSLVLYKADQYPEKPLGPVTFLWRPKTQSESSSGNRQLWIWTHPALKMELLTEL 360          
BLAST of EWM25684.1 vs. NCBI_GenBank
Match: gi|768921130|ref|XP_003965915.2| (PREDICTED: ribonucleases P/MRP protein subunit POP1 [Takifugu rubripes])

HSP 1 Score: 108.997 bits (271), Expect = 2.735e-22
Identity = 57/145 (39.31%), Postives = 78/145 (53.79%), Query Frame = 0
Query:   42 LETHVWHSKRYPRMLDRWGYRLAYALSRKPSKAPLRALSEQCCLHDASYIRVLELQATHRKDILTVLAAFMDPSDATTLGSDDKMAGNQMGEAILYRRGAFPSGMLGPVRYLWRPRGRVEGWGSEWHVWIWAHPAFATRLKEELE 186
            LETH+WH+KR+  M+ +WGY L    + K  +   RA+S  C L D SY   +ELQ    K +L  L+         T  +   ++G + G  ++YR G +PS  LGPV +LWRPR R  G     H+WIWAHP     L  EL+
Sbjct:  182 LETHIWHAKRF-HMVKKWGYCLGDRPTYKCYRPCYRAMSSHCLLQDLSYYCCIELQGEEDK-LLLALSQLTSKETGPTFAAISSLSGQRQGSLVVYRAGEYPSQPLGPVTFLWRPRARGSG---HRHLWIWAHPTMKQDLLPELQ 321          
BLAST of EWM25684.1 vs. NCBI_GenBank
Match: gi|1126201805|ref|XP_019634265.1| (PREDICTED: ribonucleases P/MRP protein subunit POP1-like isoform X2 [Branchiostoma belcheri])

HSP 1 Score: 107.071 bits (266), Expect = 8.507e-22
Identity = 65/198 (32.83%), Postives = 103/198 (52.02%), Query Frame = 0
Query:   38 HTRRLETHVWHSKRYPRMLDRWGYRLAYALSRKPSKAPLRALSEQCCLHDASYIRVLELQATHRKDILTVLAAF--MDPSDATTLGSDDKMAGNQMGEAILYRRGAFPSGMLGPVRYLWRPR---GRVEGWGSEWHVWIWAHPAFATRLKEELEEATGGEGGREGGREDGKRMKIKLVPDLLFFEMRGPLSRRSIEMA 230
            H   LETHVWH+KR+  M++RWGYRL      K  +A  RA+   C + D SY   +EL  + + +IL++LA F  +D   + ++   +   G   G AILYRR ++P+  LGPV Y++RP+    +     S   +W+W HPA    + +EL++       R     D          +L+ F++ G L+  ++E A
Sbjct:  169 HVTWLETHVWHAKRF-HMVNRWGYRLPDYPCDKSQRAAYRAMCHHCLIQDISYYGCIELTGS-KDNILSLLAHFTHLDKGGSISMFYSE---GKVEGTAILYRRDSYPNHTLGPVTYMFRPQTENSKDTFATSSCQLWLWTHPACTQDILQELQQGMSDTSVRVQSIGD----------ELVRFQLTGQLAAATLESA 351          
BLAST of EWM25684.1 vs. NCBI_GenBank
Match: gi|1126201803|ref|XP_019634263.1| (PREDICTED: ribonucleases P/MRP protein subunit POP1-like isoform X1 [Branchiostoma belcheri])

HSP 1 Score: 107.071 bits (266), Expect = 8.514e-22
Identity = 65/198 (32.83%), Postives = 103/198 (52.02%), Query Frame = 0
Query:   38 HTRRLETHVWHSKRYPRMLDRWGYRLAYALSRKPSKAPLRALSEQCCLHDASYIRVLELQATHRKDILTVLAAF--MDPSDATTLGSDDKMAGNQMGEAILYRRGAFPSGMLGPVRYLWRPR---GRVEGWGSEWHVWIWAHPAFATRLKEELEEATGGEGGREGGREDGKRMKIKLVPDLLFFEMRGPLSRRSIEMA 230
            H   LETHVWH+KR+  M++RWGYRL      K  +A  RA+   C + D SY   +EL  + + +IL++LA F  +D   + ++   +   G   G AILYRR ++P+  LGPV Y++RP+    +     S   +W+W HPA    + +EL++       R     D          +L+ F++ G L+  ++E A
Sbjct:  170 HVTWLETHVWHAKRF-HMVNRWGYRLPDYPCDKSQRAAYRAMCHHCLIQDISYYGCIELTGS-KDNILSLLAHFTHLDKGGSISMFYSE---GKVEGTAILYRRDSYPNHTLGPVTYMFRPQTENSKDTFATSSCQLWLWTHPACTQDILQELQQGMSDTSVRVQSIGD----------ELVRFQLTGQLAAATLESA 352          
BLAST of EWM25684.1 vs. NCBI_GenBank
Match: gi|348588357|ref|XP_003479933.1| (PREDICTED: ribonucleases P/MRP protein subunit POP1 [Cavia porcellus])

HSP 1 Score: 106.686 bits (265), Expect = 1.444e-21
Identity = 53/145 (36.55%), Postives = 78/145 (53.79%), Query Frame = 0
Query:   42 LETHVWHSKRYPRMLDRWGYRLAYALSRKPSKAPLRALSEQCCLHDASYIRVLELQATHRKDILTVLAAFMDPSDATTLGSDDKMAGNQMGEAILYRRGAFPSGMLGPVRYLWRPRGRVEGWGSEWHVWIWAHPAFATRLKEELE 186
            LETH+WH+KR+  M+ RWGY L    + K  +A  RA++ +C L D SY   LEL+    ++IL  L+         T  +   ++G + G  +LYR   +P  MLGPV ++W+P G   G      +WIW HP     + EEL+
Sbjct:  202 LETHIWHAKRF-HMVKRWGYCLGERPTLKSHRACYRAMTHRCLLQDLSYYCCLELKGKE-EEILKALSQMCSLDAGLTFAAVHCLSGKRQGSVVLYRANKYPREMLGPVTFIWKPEGTPSGTSGSRQLWIWLHPTVKQDILEELK 344          
BLAST of EWM25684.1 vs. NCBI_GenBank
Match: gi|765144392|ref|XP_011483194.1| (ribonucleases P/MRP protein subunit POP1 isoform X1 [Oryzias latipes])

HSP 1 Score: 105.916 bits (263), Expect = 2.316e-21
Identity = 59/145 (40.69%), Postives = 79/145 (54.48%), Query Frame = 0
Query:   42 LETHVWHSKRYPRMLDRWGYRLAYALSRKPSKAPLRALSEQCCLHDASYIRVLELQATHRKDILTVLAAFMDPSDATTLGSDDKMAGNQMGEAILYRRGAFPSGMLGPVRYLWRPRGRVEGWGSEWHVWIWAHPAFATRLKEELE 186
            LETH+WH+KR+  M+ +WGYRL    + K  +   RA+S  C L D SY   +ELQ      +LT L+         T  +   ++G + G   +YR G +PS  LGPV +LWRPR   EG  S   +WIWAHPA    L  EL+
Sbjct:  179 LETHIWHAKRF-HMVKKWGYRLGDRPTCKCYRPCYRAMSSHCLLLDISYYCCIELQG-EEDTLLTALSQLTSKETGPTFAAALCLSGCRQGSVTVYRAGQYPSHPLGPVTFLWRPRA--EGSASR-QLWIWAHPALKQDLLPELQ 318          
BLAST of EWM25684.1 vs. NCBI_GenBank
Match: gi|765144394|ref|XP_011483195.1| (ribonucleases P/MRP protein subunit POP1 isoform X2 [Oryzias latipes])

HSP 1 Score: 105.916 bits (263), Expect = 2.541e-21
Identity = 59/145 (40.69%), Postives = 79/145 (54.48%), Query Frame = 0
Query:   42 LETHVWHSKRYPRMLDRWGYRLAYALSRKPSKAPLRALSEQCCLHDASYIRVLELQATHRKDILTVLAAFMDPSDATTLGSDDKMAGNQMGEAILYRRGAFPSGMLGPVRYLWRPRGRVEGWGSEWHVWIWAHPAFATRLKEELE 186
            LETH+WH+KR+  M+ +WGYRL    + K  +   RA+S  C L D SY   +ELQ      +LT L+         T  +   ++G + G   +YR G +PS  LGPV +LWRPR   EG  S   +WIWAHPA    L  EL+
Sbjct:  179 LETHIWHAKRF-HMVKKWGYRLGDRPTCKCYRPCYRAMSSHCLLLDISYYCCIELQG-EEDTLLTALSQLTSKETGPTFAAALCLSGCRQGSVTVYRAGQYPSHPLGPVTFLWRPRA--EGSASR-QLWIWAHPALKQDLLPELQ 318          
The following BLAST results are available for this feature:
BLAST of EWM25684.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585107534|gb|EWM25684.1|0.000e+0100.00ribonucleases p mrp protein subunit pop1 [Nannochl... [more]
gi|1101383354|dbj|GAU99433.1|1.745e-2331.73hypothetical protein RvY_10438 [Ramazzottius varie... [more]
gi|1160138047|ref|XP_020370201.1|5.897e-2338.19ribonucleases P/MRP protein subunit POP1 isoform X... [more]
gi|1160138045|ref|XP_020370200.1|6.028e-2338.19ribonucleases P/MRP protein subunit POP1 isoform X... [more]
gi|768921130|ref|XP_003965915.2|2.735e-2239.31PREDICTED: ribonucleases P/MRP protein subunit POP... [more]
gi|1126201805|ref|XP_019634265.1|8.507e-2232.83PREDICTED: ribonucleases P/MRP protein subunit POP... [more]
gi|1126201803|ref|XP_019634263.1|8.514e-2232.83PREDICTED: ribonucleases P/MRP protein subunit POP... [more]
gi|348588357|ref|XP_003479933.1|1.444e-2136.55PREDICTED: ribonucleases P/MRP protein subunit POP... [more]
gi|765144392|ref|XP_011483194.1|2.316e-2140.69ribonucleases P/MRP protein subunit POP1 isoform X... [more]
gi|765144394|ref|XP_011483195.1|2.541e-2140.69ribonucleases P/MRP protein subunit POP1 isoform X... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna5001rna5001Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications