rna4999, rna4999 (mRNA) Nannochloropsis gaditana

Overview
Namerna4999
Unique Namerna4999
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1379
Alignment locationCM002464.1:879617..880612 +

Link to JBrowse

Properties
Property NameValue
ProductPutative small multi-drug export
Orig transcript idgnl|cribi|Naga_100768g2.9601.mrna
Orig protein idgnl|cribi|Naga_100768g2.9601
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002464.1supercontigCM002464.1:879617..880612 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100768g2gene4828Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna4999rna4999-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM25686.1cds4987Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna4999 ID=rna4999|Name=rna4999|organism=Nannochloropsis gaditana|type=mRNA|length=1379bp
CAAGAACCAGGACCAGTGGTAATCCATGACTAACCAATGTGGTCATGCTC
TGTTCAGAAGTGAAAGGGAATGTTGGAAAACATGTGAAGGGAGAATAACA
CAAGCGCACGGTACATAGCACGGAAGGAGTCAAACCGTCACTAAAAAAGA
TCCCTCGCGCAACATTTACACCACAAGCCTCCAACGCAAAAGCAAATCCG
ACTGAACTTCATCCCCCCTGGCCTCAAAGTTGACAACCAGCATGCTTCTC
TCACGCCCGGGACGAGGGGCAGAGCCGCGAAGACACTCTGTGTTGACGGT
AAGGCGTAGAATAAAGGGATTAACTGCGCCTAGGACCACGTCGCCGCATC
CCTCAGGCTCCAGCCGTACGAGGCGCGCCGGCACGATTTTGATGACTAGG
TAATTCGCCGTCGGGCCCGGTAAAACAAAGGCACGTGTCTCTCAATGGCA
TAAAGGCACGTGCTTAGGCTGGTGGACGTGCCGTTTTAGGTTGGCCCGGT
GAATTTTTGGCGTTTGCGCAGTCTTCCCGGATGCCGTAGAGGCGTCGGAA
TTATCTTTTGCTTTTTCTCTCAAATCTATTTTCTGACTTTCACAACTGTC
CCGGTGCCTTGACTTTTCAATCCCGTCATGTTGCTGGGGGCCTTCTATGA
AATTAAGGGGTCGTGTGATGGATGGTTTGGACCCAGTCGTCGGAAATGCA
TTAATTTGGCATGAATATTCTGATGCTGCCCTGCCCGAGCGGTTTTGAGG
GATTGGGCCAGGGCCCGGGCAAGAAGGAAGTGTCATTGATATATGTGCCA
ACTGTGTCTCAAGCTTGATGTGCTGCACATGGGTTAAACTATACTGGTGC
TGGCAAGTGCGAGGGCAGGCGGAGAATGGAAATGGAATCGAATGGCCGTC
GTTTTTTTTTTTCGAAAAGACCGCCCAGTACGAGCAGGGTATTCAGTAAA
ACGACCGTAAACCCCCTTAATCGAATCATATTTTTACCCCACACCAACGC
CACATTGGGACACCTGCTCTGCATTTTCCAGCGGAATCGACGTGTGGACA
GGCAATTGAGGCCTGTCGTGGCACTCTGCTCGCAATATCACAGATGGCTT
TGGAAATGGAGACAAGTCACTCGCCTCTGAAGGCTCATCACGAAGGTGGC
ATCATGGAGGCCTCACCGGGTAGCTACGACTGCGAGTCACAAAGCATGGA
TGGCTGGTCGTCTGACAGTGTGGACTCTTCGGCCCCGCATTCTTACATGT
GGCGTGACATTCGATGCTCGTACGATGCGAACATGAGCGGTCGAGGGGGA
AAGCAAGTAGAGATTGAGGTGCTGCACGGCATCGACGGACAATTGGAAGC
GGGGCAAATGCTGGCAGTGATCGGGCCTT
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protein sequence of rna4999

>rna4999-protein ID=rna4999-protein|Name=rna4999|organism=Nannochloropsis gaditana|type=polypeptide|length=331bp
MTTLVSHGLPLVLVLAAFLTANSMPSRLAFLPATTGLPIAKSIRLPTHGP
SPFHSYPSNRPAFSRGCTSSEAPGFSFSKATPMSTIPSLFKISGGGNTSR
PPASSTKSILPSTPRTRRVVAWACALATLLFMTTATSVPRALAAAVEHGE
HLHLGQRVAKTIGTRTGWPNWVTLMAISALPVVELRGGVPVGLWMGIPAA
QTFLLACLGNLIPVPLILLVLRNTPWLMEKVTPVLEKKLKDTTGAKMNWQ
ALAIFVGVPLPGTGAWTGAAIAALFKLSYAESFLGIVVGILSAAAIMTAL
VKAGMWGAIAVGGGLLISFAAQQLGERKEKK
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mRNA from alignment at CM002464.1:879617..880612+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna4999 ID=rna4999|Name=rna4999|organism=Nannochloropsis gaditana|type=mRNA|length=996bp|location=Sequence derived from alignment at CM002464.1:879617..880612+ (Nannochloropsis gaditana)
ATGACCACATTGGTTAGTCATGGATTACCACTGGTCCTGGTTCTTGCAGC
ATTTTTGACCGCCAATTCCATGCCTTCCCGCCTCGCATTCCTGCCTGCAA
CGACCGGCTTACCGATAGCCAAGTCGATacgccttcccacccacgGGCCT
TCCCCGTTCCATTCATACCCAAGCAACCGTCCTGCCTTTTCACGCGGCTG
TACTAGCTCTGAGGCACCTggtttttccttttccaaagCCACACCTATGT
CCACCATCCCATCTTTGTTCAAGATCTCGGGGGGAGGTAACACAAGCaga
cctcctgcctcctcgacTAAATCGATTCTACCCTCAACCCCCCGCACCCG
CCGTGTCGTCGCCTGGGCCTGTGCTTTGGCCACCCTCTTGTTTATGACCA
CGGCGACCTCGGTTCCTCGTGCTCTGGCTGCAGCAgtggagcacggggag
cATTTGCATTTGGGCCAGCGTGTGGCCAAGACCATCGGAACCCGCACAGG
GTGGCCGAATTGGGTGACGCTCATGGCCATTTCCGCCTTGCCCGTCGTCG
AGCTGCGTGGAGGGGTGCCCGTGGGGCTGTGGATGGGGATTCCTGCCGCC
CAAACCTTTTTGTTGGCTTGCCTGGGCAATCTGATCCCCGTGCCCCTCAT
CTTGCTCGTGCTCCGGAACACGCCTTGGTTGATGGAGAAAGTGACGCCCG
TGTTGGAAAAGAAATTGAAGGACACGACAGGAGCGAAGATGAATTGGCAA
GCCTTAGCGATATTTGTGGGGGTGCCCTTACCGGGCACGGGCGCCTGGAC
TGGCGCCGCGATTGCAGCCTTGTTTAAGTTGTCGTACGCCGAGTCCTTTC
TGGGGATCGTGGTTGGTATCCTTTCTGCGGCTGCCATCATGACGGCTTTG
GTAAAAGCTGGCATGTGGGGGGCGATAGCGGTGGGAGGTGGTTTGTTGAT
CAGTTTTGCAGCTCAGCAGTTGGGTgaacgaaaggaaaagaagtga
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Coding sequence (CDS) from alignment at CM002464.1:879617..880612+

>rna4999 ID=rna4999|Name=rna4999|organism=Nannochloropsis gaditana|type=CDS|length=996bp|location=Sequence derived from alignment at CM002464.1:879617..880612+ (Nannochloropsis gaditana)
ATGACCACATTGGTTAGTCATGGATTACCACTGGTCCTGGTTCTTGCAGC
ATTTTTGACCGCCAATTCCATGCCTTCCCGCCTCGCATTCCTGCCTGCAA
CGACCGGCTTACCGATAGCCAAGTCGATacgccttcccacccacgGGCCT
TCCCCGTTCCATTCATACCCAAGCAACCGTCCTGCCTTTTCACGCGGCTG
TACTAGCTCTGAGGCACCTggtttttccttttccaaagCCACACCTATGT
CCACCATCCCATCTTTGTTCAAGATCTCGGGGGGAGGTAACACAAGCaga
cctcctgcctcctcgacTAAATCGATTCTACCCTCAACCCCCCGCACCCG
CCGTGTCGTCGCCTGGGCCTGTGCTTTGGCCACCCTCTTGTTTATGACCA
CGGCGACCTCGGTTCCTCGTGCTCTGGCTGCAGCAgtggagcacggggag
cATTTGCATTTGGGCCAGCGTGTGGCCAAGACCATCGGAACCCGCACAGG
GTGGCCGAATTGGGTGACGCTCATGGCCATTTCCGCCTTGCCCGTCGTCG
AGCTGCGTGGAGGGGTGCCCGTGGGGCTGTGGATGGGGATTCCTGCCGCC
CAAACCTTTTTGTTGGCTTGCCTGGGCAATCTGATCCCCGTGCCCCTCAT
CTTGCTCGTGCTCCGGAACACGCCTTGGTTGATGGAGAAAGTGACGCCCG
TGTTGGAAAAGAAATTGAAGGACACGACAGGAGCGAAGATGAATTGGCAA
GCCTTAGCGATATTTGTGGGGGTGCCCTTACCGGGCACGGGCGCCTGGAC
TGGCGCCGCGATTGCAGCCTTGTTTAAGTTGTCGTACGCCGAGTCCTTTC
TGGGGATCGTGGTTGGTATCCTTTCTGCGGCTGCCATCATGACGGCTTTG
GTAAAAGCTGGCATGTGGGGGGCGATAGCGGTGGGAGGTGGTTTGTTGAT
CAGTTTTGCAGCTCAGCAGTTGGGTgaacgaaaggaaaagaagtga
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Synonyms
Publications