EWM25686.1, cds4987 (CDS) Nannochloropsis gaditana

Overview
NameEWM25686.1
Unique Namecds4987
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002464.1:879617..880612 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM25686.1
ProductPutative small multi-drug export
Orig transcript idgnl|cribi|Naga_100768g2.9601.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002464.1supercontigCM002464.1:879617..880612 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Vocabulary: INTERPRO
TermDefinition
IPR009577Sm_multidrug_ex
Homology
BLAST of EWM25686.1 vs. NCBI_GenBank
Match: gi|585107537|gb|EWM25686.1| (Putative small multi-drug export [Nannochloropsis gaditana])

HSP 1 Score: 650.588 bits (1677), Expect = 0.000e+0
Identity = 331/331 (100.00%), Postives = 331/331 (100.00%), Query Frame = 0
Query:    1 MTTLVSHGLPLVLVLAAFLTANSMPSRLAFLPATTGLPIAKSIRLPTHGPSPFHSYPSNRPAFSRGCTSSEAPGFSFSKATPMSTIPSLFKISGGGNTSRPPASSTKSILPSTPRTRRVVAWACALATLLFMTTATSVPRALAAAVEHGEHLHLGQRVAKTIGTRTGWPNWVTLMAISALPVVELRGGVPVGLWMGIPAAQTFLLACLGNLIPVPLILLVLRNTPWLMEKVTPVLEKKLKDTTGAKMNWQALAIFVGVPLPGTGAWTGAAIAALFKLSYAESFLGIVVGILSAAAIMTALVKAGMWGAIAVGGGLLISFAAQQLGERKEKK 331
            MTTLVSHGLPLVLVLAAFLTANSMPSRLAFLPATTGLPIAKSIRLPTHGPSPFHSYPSNRPAFSRGCTSSEAPGFSFSKATPMSTIPSLFKISGGGNTSRPPASSTKSILPSTPRTRRVVAWACALATLLFMTTATSVPRALAAAVEHGEHLHLGQRVAKTIGTRTGWPNWVTLMAISALPVVELRGGVPVGLWMGIPAAQTFLLACLGNLIPVPLILLVLRNTPWLMEKVTPVLEKKLKDTTGAKMNWQALAIFVGVPLPGTGAWTGAAIAALFKLSYAESFLGIVVGILSAAAIMTALVKAGMWGAIAVGGGLLISFAAQQLGERKEKK
Sbjct:    1 MTTLVSHGLPLVLVLAAFLTANSMPSRLAFLPATTGLPIAKSIRLPTHGPSPFHSYPSNRPAFSRGCTSSEAPGFSFSKATPMSTIPSLFKISGGGNTSRPPASSTKSILPSTPRTRRVVAWACALATLLFMTTATSVPRALAAAVEHGEHLHLGQRVAKTIGTRTGWPNWVTLMAISALPVVELRGGVPVGLWMGIPAAQTFLLACLGNLIPVPLILLVLRNTPWLMEKVTPVLEKKLKDTTGAKMNWQALAIFVGVPLPGTGAWTGAAIAALFKLSYAESFLGIVVGILSAAAIMTALVKAGMWGAIAVGGGLLISFAAQQLGERKEKK 331          
BLAST of EWM25686.1 vs. NCBI_GenBank
Match: gi|299472208|emb|CBN77178.1| (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 165.622 bits (418), Expect = 7.763e-45
Identity = 95/203 (46.80%), Postives = 131/203 (64.53%), Query Frame = 0
Query:  113 TPRTRRVVAWACALA---TLLFMTTATSVPRALAAAVEHGEHLHLGQRVAKTIGTRTGWPNWVTLMAISALPVVELRGGVPVGLWMGIPAAQTFLLACLGNLIPVPLILLVLRNTPWLMEKVTPVLEKKLKDTTG---AKMNWQALAIFVGVPLPGTGAWTGAAIAALFKLSYAESFLGIVVGILSAAAIMTALVKAGMWGAI 309
            TPR   + A A A+    ++L   TA++  +A+ A  E   HLH+GQ+VAK    R G P+W TLM ISA+PVVELRGGVPVG+WMG+P A+ F L   GN+IP+P+ILL LR++ ++ +   PVL++  +   G    K    AL +FVG+PLPGTGAWTGA  A L  + + ++ L I VG++SA  IM+ L  AG  GA+
Sbjct:  109 TPRFAALTASALAVGLAVSVLAPGTASAAVKAIVAGSEDEAHLHVGQKVAKFF-RRGGLPDWATLMTISAMPVVELRGGVPVGIWMGMPIAKVFGLCVAGNMIPIPVILLALRSS-FVQKLAKPVLDRAREKAAGFGDEKSQALALTLFVGIPLPGTGAWTGAMGAFLLGMPFQKAMLSIFVGVVSAGVIMSCLTLAGKAGAL 309          
BLAST of EWM25686.1 vs. NCBI_GenBank
Match: gi|1129174860|gb|OLP83814.1| (hypothetical protein AK812_SmicGene35375 [Symbiodinium microadriaticum])

HSP 1 Score: 143.28 bits (360), Expect = 1.257e-36
Identity = 82/178 (46.07%), Postives = 112/178 (62.92%), Query Frame = 0
Query:  153 HLGQRVAKTIGTRTGWPNWVTLMAISALPVVELRGGVPVGLWMGIPAAQTFLLACLGNLIPVPLILLVLRNTPWLMEKVTPVLEKKLKDTT--GAKMNWQALAIFVGVPLPGTGAWTGAAIAALFKLSYAESFLGIVVGILSAAAIMTALVKAGMWGAIAVGGGLLISFAAQQLGERK 328
            HLG R+A  + T    P+W  LM ISALP+VELRGGVPVGLWMG+   Q  LL  LGN+IP+PLIL  LR    + + ++P+L++  + T   GA   W  +A FVGVPLPGTGAWTGA +A L  +   E+   ++ G++ AA IM +L  AG +G   V    +++ A++ L  RK
Sbjct:  133 HLGIRLATKMKTCFSIPDWAILMMISALPLVELRGGVPVGLWMGLAVPQVMLLCILGNMIPIPLILAALRIEQ-MKQLLSPLLKRAAQKTEPIGAHDRWVGVAAFVGVPLPGTGAWTGAMVAYLLGMDLWEAITSVLAGVVVAACIMASLTLAGWYGCAFVVMLGIVALASRWLQMRK 309          
BLAST of EWM25686.1 vs. NCBI_GenBank
Match: gi|1072232349|gb|OEU17081.1| (ferredoxin NADP reductase [Fragilariopsis cylindrus CCMP1102])

HSP 1 Score: 140.584 bits (353), Expect = 1.218e-33
Identity = 88/207 (42.51%), Postives = 121/207 (58.45%), Query Frame = 0
Query:  123 ACALATLLFMTTATSVPRALAAAVEHGEHLHLGQRVAKTIGTRTGWPNWVTLMAISALPVVELRGGVPVGLWMGIPAAQTFLLACLGNLIPVPLILLVLRNTPWLMEKVTPVLEKKLKDTTG-----AKMNWQALAIFVGVPLPGTGAWTGAAIAALFKLSYAESFLGIVVGILSAAAIMTALVKAGMWGAIAVGGGLLISFAAQQL 324
            A AL TL  +T+      A  A VE  EHLH GQ++A       G P W  L  ISA+PVVELRG +PVG+WMG+P  Q  L   +GN+IP+  +L +L+N P L + ++P+L +  K   G      +  W +LA FVG+PLPGTGAWTGA  + L  +    +   I  G++SA  IMTAL  AG  G + +   +LI+FAA ++
Sbjct:  104 AMALVTLSLLTSPAFA--AKKAVVETVEHLHTGQKIANFF-MSFGLPKWAVLATISAMPVVELRGAIPVGVWMGLPIQQVLLTCVIGNMIPIVPLLFLLKN-PSLKKLMSPILNRAEKKAAGLGVGSLEKQWVSLAAFVGIPLPGTGAWTGAMGSFLLGMPTLFALSSIFAGVVSAGLIMTALTLAGRTGGL-IAISVLIAFAANEV 305          
BLAST of EWM25686.1 vs. NCBI_GenBank
Match: gi|544210247|ref|XP_005535525.1| (similar to small multidrug export protein qacE [Cyanidioschyzon merolae strain 10D] >gi|449015837|dbj|BAM79239.1| similar to small multidrug export protein qacE [Cyanidioschyzon merolae strain 10D])

HSP 1 Score: 127.872 bits (320), Expect = 2.381e-31
Identity = 79/190 (41.58%), Postives = 111/190 (58.42%), Query Frame = 0
Query:  145 AVEHGEHLHLGQRVAKTIGTRTGWPNWVTLMAISALPVVELRGGVPVGLWMGIPAAQTFLLACLGNLIPVPLILLVLRNTPWLMEKVTPVLEKKLKDTTGAKM---------NWQALAIFVGVPLPGTGAWTGAAIAALFKLSYAESFLGIVVGILSAAAIMTALVKAGMWGAIAVGGGLLISFAAQQLG 325
            +VE  +  HLG R+A  +   T  P+W TLM +SALPVVELRGGVPVGLW+G+  A+TFL   +GN++P+P ++  LR+    M +    L + L D+   ++            ALA+FVGVPLPGTGAW+GA  A L ++    + + I  G+  A  IM ALV  G        GGL+++FA   +G
Sbjct:   70 SVEQHQK-HLGHRIAFWLRRETRLPDWATLMLVSALPVVELRGGVPVGLWLGLSPAETFLFCVIGNMLPIPFLVFGLRHER--MRR----LARPLLDSVARRLPSHANTPSSQALALALFVGVPLPGTGAWSGAIAAFLLQMDIWLALVSIAAGVAIAGCIMIALVLMGR------IGGLIVAFALLGVG 246          
BLAST of EWM25686.1 vs. NCBI_GenBank
Match: gi|971519396|dbj|GAQ78820.1| (hypothetical protein KFL_000190380 [Klebsormidium nitens])

HSP 1 Score: 121.324 bits (303), Expect = 9.485e-29
Identity = 75/191 (39.27%), Postives = 113/191 (59.16%), Query Frame = 0
Query:  149 GEHLHLGQRVAKTIGTRTGWPNWVTLMAISALPVVELRGGVPVGLWMGIPAAQTFLLACLGNLIPVPLIL-LVLRNTPWLME------KVTPVLEKKLKDTTGAKMNWQ--ALAIFVGVPLPGTGAWTGAAIAALFKLSYAESFLGIVVGILSAAAIMTALVKAGMWGAIAVGGGLLISFAAQQLGERKEK 330
            G HL LGQR+A  + +  G P+WVT++ ++ALPVVELRG +PVG W+G+   Q + LA LGN++P+P ++  V + + WL++      K    L K+ +      + ++   L +FV VPLP TGAW+GA  A L  L + ES    + G++ A AI+TAL + G  GA+  G GL  +  A     R++K
Sbjct:   77 GGHLSLGQRIAVALRS-LGLPDWVTIILVAALPVVELRGAIPVGYWLGLKPIQVYGLAVLGNMLPIPFVIAYVGKVSDWLVQRSGLAKKFFEWLFKRTRSRADLLVKYRTLGLTLFVAVPLPLTGAWSGAIGAHLLGLPFWESIAANLAGVMIAGAIVTALCELGYAGALIAGAGLFTAAIAAFWTSRRKK 266          
BLAST of EWM25686.1 vs. NCBI_GenBank
Match: gi|546325177|ref|XP_005718587.1| (unnamed protein product [Chondrus crispus] >gi|507115191|emb|CDF38682.1| unnamed protein product [Chondrus crispus])

HSP 1 Score: 115.931 bits (289), Expect = 2.716e-26
Identity = 71/170 (41.76%), Postives = 102/170 (60.00%), Query Frame = 0
Query:  150 EHLHLGQRVAKTIGTRTGWPNWVTLMAISALPVVELRGGVPVGLWMGIPAAQTFLLACLGNLIPV-PLILLV-LRNTPWLMEKVTPVLEKKLKDTTGAKMNWQALAIFVGVPLPGTGAWTGAAIAALFKLSYAESFLGIVVGILSAAAIMTALVKAGMWGAIAVGGGLLI 317
            E   L QR++  + +R G P+ + +  +SALP VELR G+PVG  + +   +T LLA LGNL P+ PL+L++ +R    L  +V     KK      A     ALA+FVGVPLPGTGAWTG+ +A +  + + +SF  +  G++ AA+IMT L   G  GA+ V G LL+
Sbjct:  133 EKKPLSQRISDKLRSR-GLPDELVVFLVSALPAVELRAGIPVGFVLNMHPLKTLLLAVLGNLAPILPLMLILRVRFVQALAARVLDRARKKAAAVGNANSRAVALALFVGVPLPGTGAWTGSLVAFVLGMPFGQSFAALAAGVVMAASIMTVLCALGKVGAL-VAGTLLV 300          
BLAST of EWM25686.1 vs. NCBI_GenBank
Match: gi|545704380|ref|XP_005704513.1| (small multidrug efflux protein, DMT family isoform 1 [Galdieria sulphuraria] >gi|545704382|ref|XP_005704514.1| small multidrug efflux protein, DMT family isoform 2 [Galdieria sulphuraria] >gi|452820957|gb|EME27993.1| small multidrug efflux protein, DMT family isoform 1 [Galdieria sulphuraria] >gi|452820958|gb|EME27994.1| small multidrug efflux protein, DMT family isoform 2 [Galdieria sulphuraria])

HSP 1 Score: 112.464 bits (280), Expect = 4.828e-25
Identity = 68/170 (40.00%), Postives = 103/170 (60.59%), Query Frame = 0
Query:  146 VEHGEHLHLG-QRVAKTIGTRTGWPNWVTLMAISALPVVELRGGVPVGLWMGIPAAQTFLLACLGNLIPVPLILLVLRN---TPWL--MEKVTPVLEKKLKDTTGAKMNWQALAIFVGVPLPGTGAWTGAAIAALFKLSYAESFLGIVVGILSAAAIMTALVKAGMWGAI 309
            V+   + H G Q VAK    + G P+ + L  IS+LPV+ELRG +P+G+WMG    Q + L+ LGNL+PVPL+L  L++     W   M +    +++++ + T  ++   ALA+FVG+PLPGTGAW+GA IA +  + +  + + I  G+L A  IM  L K G  GA+
Sbjct:  126 VKSSSNQHFGLQLVAKL--RKLGLPDALVLFIISSLPVLELRGAIPIGVWMGFSLVQVYFLSVLGNLLPVPLLLHGLKHQKVQKWFAPMLRRAEQMKQQIANETFREI---ALALFVGIPLPGTGAWSGAVIAFVLNMPFWGATISITGGVLIAGLIMLVLTKMGKTGAL 290          
BLAST of EWM25686.1 vs. NCBI_GenBank
Match: gi|567143019|ref|XP_006395772.1| (hypothetical protein EUTSA_v10004613mg [Eutrema salsugineum] >gi|557092411|gb|ESQ33058.1| hypothetical protein EUTSA_v10004613mg [Eutrema salsugineum])

HSP 1 Score: 111.309 bits (277), Expect = 1.360e-24
Identity = 66/184 (35.87%), Postives = 100/184 (54.35%), Query Frame = 0
Query:  144 AAVEHGEHLHLGQRVAKTIGTRTGWPNWVTLMAISALPVVELRGGVPVGLWMGI-PAAQTFLLACLGNLIPVPLILLVLRNTPWLM-------EKVTPVLEKKLKDTTG--AKMNWQALAIFVGVPLPGTGAWTGAAIAALFKLSYAESFLGIVVGILSAAAIMTALVKAGMWGAIAVGGGLLI 317
            AA +  +    G R+A T+  R GWP+   + A++ LPV+ELRG +PVG WM + P   TF  + LGN++PVP+I+L L+     +        K+  +L K+ K+  G   +  W  L +FV VP PGTGAWTGA IA++  + +  +      G++ A  ++  LV  G+  AI  G  L  
Sbjct:  116 AAADSIKSSSFGLRIAATL-RRFGWPDEAVVFALATLPVIELRGAIPVGYWMQLKPTVLTF-FSVLGNMVPVPVIILYLKKFASFLAGKSRTASKLLEILFKRAKEKAGPVEEFQWLGLMLFVAVPFPGTGAWTGAIIASILDMPFWSAVSSNFCGVVLAGLLVNFLVNLGLKEAIVAGIALFF 297          
BLAST of EWM25686.1 vs. NCBI_GenBank
Match: gi|1210523796|dbj|GAX17478.1| (ferredoxin--NADP+ reductase [Fistulifera solaris])

HSP 1 Score: 114.39 bits (285), Expect = 1.777e-24
Identity = 84/188 (44.68%), Postives = 110/188 (58.51%), Query Frame = 0
Query:  118 RVVAWACALATLLFMTTATSVPRALAAAVEHGEHLHLGQRVAKTIGTRTGWPNWVTLMAISALPVVELRGGVPVGLWMGIPAAQTFLLACLGNLIPVPLILLVLRNTPWLMEKVTPVL---EKKLKD--TTGAKMNWQALAIFVGVPLPGTGAWTGAAIAALFKLSYAESFLGIVVGILSAAAIMTAL 300
            RV    C+LA LL M T      A  A       LHLGQ++A    T  G P+   L  ISALP+VELRG +PVG+WMG+P ++   +  LGN+IP+  +LL+LRN   L   + P+L   EKK K+      +  W +LA FVG+PLPGTGAWTGA  A L  +  A +F  I  G++SA  IMTA+
Sbjct:   84 RVAFGFCSLA-LLHMATLEPANAARKAKKAVEVPLHLGQKIANYFRT-FGIPDLGVLTIISALPIVELRGAIPVGIWMGLPISKVLPVCILGNMIPILPLLLLLRNKT-LKNAMNPILTQAEKKTKELGIGSVQKQWASLATFVGIPLPGTGAWTGAMGAFLLGMPLAVAFTSIFAGVVSAGVIMTAI 268          
The following BLAST results are available for this feature:
BLAST of EWM25686.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585107537|gb|EWM25686.1|0.000e+0100.00Putative small multi-drug export [Nannochloropsis ... [more]
gi|299472208|emb|CBN77178.1|7.763e-4546.80conserved unknown protein [Ectocarpus siliculosus][more]
gi|1129174860|gb|OLP83814.1|1.257e-3646.07hypothetical protein AK812_SmicGene35375 [Symbiodi... [more]
gi|1072232349|gb|OEU17081.1|1.218e-3342.51ferredoxin NADP reductase [Fragilariopsis cylindru... [more]
gi|544210247|ref|XP_005535525.1|2.381e-3141.58similar to small multidrug export protein qacE [Cy... [more]
gi|971519396|dbj|GAQ78820.1|9.485e-2939.27hypothetical protein KFL_000190380 [Klebsormidium ... [more]
gi|546325177|ref|XP_005718587.1|2.716e-2641.76unnamed protein product [Chondrus crispus] >gi|507... [more]
gi|545704380|ref|XP_005704513.1|4.828e-2540.00small multidrug efflux protein, DMT family isoform... [more]
gi|567143019|ref|XP_006395772.1|1.360e-2435.87hypothetical protein EUTSA_v10004613mg [Eutrema sa... [more]
gi|1210523796|dbj|GAX17478.1|1.777e-2444.68ferredoxin--NADP+ reductase [Fistulifera solaris][more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna4999rna4999Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications