EWM25686.1, cds4987 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM25686.1 vs. NCBI_GenBank
Match: gi|585107537|gb|EWM25686.1| (Putative small multi-drug export [Nannochloropsis gaditana]) HSP 1 Score: 650.588 bits (1677), Expect = 0.000e+0 Identity = 331/331 (100.00%), Postives = 331/331 (100.00%), Query Frame = 0
Query: 1 MTTLVSHGLPLVLVLAAFLTANSMPSRLAFLPATTGLPIAKSIRLPTHGPSPFHSYPSNRPAFSRGCTSSEAPGFSFSKATPMSTIPSLFKISGGGNTSRPPASSTKSILPSTPRTRRVVAWACALATLLFMTTATSVPRALAAAVEHGEHLHLGQRVAKTIGTRTGWPNWVTLMAISALPVVELRGGVPVGLWMGIPAAQTFLLACLGNLIPVPLILLVLRNTPWLMEKVTPVLEKKLKDTTGAKMNWQALAIFVGVPLPGTGAWTGAAIAALFKLSYAESFLGIVVGILSAAAIMTALVKAGMWGAIAVGGGLLISFAAQQLGERKEKK 331
MTTLVSHGLPLVLVLAAFLTANSMPSRLAFLPATTGLPIAKSIRLPTHGPSPFHSYPSNRPAFSRGCTSSEAPGFSFSKATPMSTIPSLFKISGGGNTSRPPASSTKSILPSTPRTRRVVAWACALATLLFMTTATSVPRALAAAVEHGEHLHLGQRVAKTIGTRTGWPNWVTLMAISALPVVELRGGVPVGLWMGIPAAQTFLLACLGNLIPVPLILLVLRNTPWLMEKVTPVLEKKLKDTTGAKMNWQALAIFVGVPLPGTGAWTGAAIAALFKLSYAESFLGIVVGILSAAAIMTALVKAGMWGAIAVGGGLLISFAAQQLGERKEKK
Sbjct: 1 MTTLVSHGLPLVLVLAAFLTANSMPSRLAFLPATTGLPIAKSIRLPTHGPSPFHSYPSNRPAFSRGCTSSEAPGFSFSKATPMSTIPSLFKISGGGNTSRPPASSTKSILPSTPRTRRVVAWACALATLLFMTTATSVPRALAAAVEHGEHLHLGQRVAKTIGTRTGWPNWVTLMAISALPVVELRGGVPVGLWMGIPAAQTFLLACLGNLIPVPLILLVLRNTPWLMEKVTPVLEKKLKDTTGAKMNWQALAIFVGVPLPGTGAWTGAAIAALFKLSYAESFLGIVVGILSAAAIMTALVKAGMWGAIAVGGGLLISFAAQQLGERKEKK 331
BLAST of EWM25686.1 vs. NCBI_GenBank
Match: gi|299472208|emb|CBN77178.1| (conserved unknown protein [Ectocarpus siliculosus]) HSP 1 Score: 165.622 bits (418), Expect = 7.763e-45 Identity = 95/203 (46.80%), Postives = 131/203 (64.53%), Query Frame = 0
Query: 113 TPRTRRVVAWACALA---TLLFMTTATSVPRALAAAVEHGEHLHLGQRVAKTIGTRTGWPNWVTLMAISALPVVELRGGVPVGLWMGIPAAQTFLLACLGNLIPVPLILLVLRNTPWLMEKVTPVLEKKLKDTTG---AKMNWQALAIFVGVPLPGTGAWTGAAIAALFKLSYAESFLGIVVGILSAAAIMTALVKAGMWGAI 309
TPR + A A A+ ++L TA++ +A+ A E HLH+GQ+VAK R G P+W TLM ISA+PVVELRGGVPVG+WMG+P A+ F L GN+IP+P+ILL LR++ ++ + PVL++ + G K AL +FVG+PLPGTGAWTGA A L + + ++ L I VG++SA IM+ L AG GA+
Sbjct: 109 TPRFAALTASALAVGLAVSVLAPGTASAAVKAIVAGSEDEAHLHVGQKVAKFF-RRGGLPDWATLMTISAMPVVELRGGVPVGIWMGMPIAKVFGLCVAGNMIPIPVILLALRSS-FVQKLAKPVLDRAREKAAGFGDEKSQALALTLFVGIPLPGTGAWTGAMGAFLLGMPFQKAMLSIFVGVVSAGVIMSCLTLAGKAGAL 309
BLAST of EWM25686.1 vs. NCBI_GenBank
Match: gi|1129174860|gb|OLP83814.1| (hypothetical protein AK812_SmicGene35375 [Symbiodinium microadriaticum]) HSP 1 Score: 143.28 bits (360), Expect = 1.257e-36 Identity = 82/178 (46.07%), Postives = 112/178 (62.92%), Query Frame = 0
Query: 153 HLGQRVAKTIGTRTGWPNWVTLMAISALPVVELRGGVPVGLWMGIPAAQTFLLACLGNLIPVPLILLVLRNTPWLMEKVTPVLEKKLKDTT--GAKMNWQALAIFVGVPLPGTGAWTGAAIAALFKLSYAESFLGIVVGILSAAAIMTALVKAGMWGAIAVGGGLLISFAAQQLGERK 328
HLG R+A + T P+W LM ISALP+VELRGGVPVGLWMG+ Q LL LGN+IP+PLIL LR + + ++P+L++ + T GA W +A FVGVPLPGTGAWTGA +A L + E+ ++ G++ AA IM +L AG +G V +++ A++ L RK
Sbjct: 133 HLGIRLATKMKTCFSIPDWAILMMISALPLVELRGGVPVGLWMGLAVPQVMLLCILGNMIPIPLILAALRIEQ-MKQLLSPLLKRAAQKTEPIGAHDRWVGVAAFVGVPLPGTGAWTGAMVAYLLGMDLWEAITSVLAGVVVAACIMASLTLAGWYGCAFVVMLGIVALASRWLQMRK 309
BLAST of EWM25686.1 vs. NCBI_GenBank
Match: gi|1072232349|gb|OEU17081.1| (ferredoxin NADP reductase [Fragilariopsis cylindrus CCMP1102]) HSP 1 Score: 140.584 bits (353), Expect = 1.218e-33 Identity = 88/207 (42.51%), Postives = 121/207 (58.45%), Query Frame = 0
Query: 123 ACALATLLFMTTATSVPRALAAAVEHGEHLHLGQRVAKTIGTRTGWPNWVTLMAISALPVVELRGGVPVGLWMGIPAAQTFLLACLGNLIPVPLILLVLRNTPWLMEKVTPVLEKKLKDTTG-----AKMNWQALAIFVGVPLPGTGAWTGAAIAALFKLSYAESFLGIVVGILSAAAIMTALVKAGMWGAIAVGGGLLISFAAQQL 324
A AL TL +T+ A A VE EHLH GQ++A G P W L ISA+PVVELRG +PVG+WMG+P Q L +GN+IP+ +L +L+N P L + ++P+L + K G + W +LA FVG+PLPGTGAWTGA + L + + I G++SA IMTAL AG G + + +LI+FAA ++
Sbjct: 104 AMALVTLSLLTSPAFA--AKKAVVETVEHLHTGQKIANFF-MSFGLPKWAVLATISAMPVVELRGAIPVGVWMGLPIQQVLLTCVIGNMIPIVPLLFLLKN-PSLKKLMSPILNRAEKKAAGLGVGSLEKQWVSLAAFVGIPLPGTGAWTGAMGSFLLGMPTLFALSSIFAGVVSAGLIMTALTLAGRTGGL-IAISVLIAFAANEV 305
BLAST of EWM25686.1 vs. NCBI_GenBank
Match: gi|544210247|ref|XP_005535525.1| (similar to small multidrug export protein qacE [Cyanidioschyzon merolae strain 10D] >gi|449015837|dbj|BAM79239.1| similar to small multidrug export protein qacE [Cyanidioschyzon merolae strain 10D]) HSP 1 Score: 127.872 bits (320), Expect = 2.381e-31 Identity = 79/190 (41.58%), Postives = 111/190 (58.42%), Query Frame = 0
Query: 145 AVEHGEHLHLGQRVAKTIGTRTGWPNWVTLMAISALPVVELRGGVPVGLWMGIPAAQTFLLACLGNLIPVPLILLVLRNTPWLMEKVTPVLEKKLKDTTGAKM---------NWQALAIFVGVPLPGTGAWTGAAIAALFKLSYAESFLGIVVGILSAAAIMTALVKAGMWGAIAVGGGLLISFAAQQLG 325
+VE + HLG R+A + T P+W TLM +SALPVVELRGGVPVGLW+G+ A+TFL +GN++P+P ++ LR+ M + L + L D+ ++ ALA+FVGVPLPGTGAW+GA A L ++ + + I G+ A IM ALV G GGL+++FA +G
Sbjct: 70 SVEQHQK-HLGHRIAFWLRRETRLPDWATLMLVSALPVVELRGGVPVGLWLGLSPAETFLFCVIGNMLPIPFLVFGLRHER--MRR----LARPLLDSVARRLPSHANTPSSQALALALFVGVPLPGTGAWSGAIAAFLLQMDIWLALVSIAAGVAIAGCIMIALVLMGR------IGGLIVAFALLGVG 246
BLAST of EWM25686.1 vs. NCBI_GenBank
Match: gi|971519396|dbj|GAQ78820.1| (hypothetical protein KFL_000190380 [Klebsormidium nitens]) HSP 1 Score: 121.324 bits (303), Expect = 9.485e-29 Identity = 75/191 (39.27%), Postives = 113/191 (59.16%), Query Frame = 0
Query: 149 GEHLHLGQRVAKTIGTRTGWPNWVTLMAISALPVVELRGGVPVGLWMGIPAAQTFLLACLGNLIPVPLIL-LVLRNTPWLME------KVTPVLEKKLKDTTGAKMNWQ--ALAIFVGVPLPGTGAWTGAAIAALFKLSYAESFLGIVVGILSAAAIMTALVKAGMWGAIAVGGGLLISFAAQQLGERKEK 330
G HL LGQR+A + + G P+WVT++ ++ALPVVELRG +PVG W+G+ Q + LA LGN++P+P ++ V + + WL++ K L K+ + + ++ L +FV VPLP TGAW+GA A L L + ES + G++ A AI+TAL + G GA+ G GL + A R++K
Sbjct: 77 GGHLSLGQRIAVALRS-LGLPDWVTIILVAALPVVELRGAIPVGYWLGLKPIQVYGLAVLGNMLPIPFVIAYVGKVSDWLVQRSGLAKKFFEWLFKRTRSRADLLVKYRTLGLTLFVAVPLPLTGAWSGAIGAHLLGLPFWESIAANLAGVMIAGAIVTALCELGYAGALIAGAGLFTAAIAAFWTSRRKK 266
BLAST of EWM25686.1 vs. NCBI_GenBank
Match: gi|546325177|ref|XP_005718587.1| (unnamed protein product [Chondrus crispus] >gi|507115191|emb|CDF38682.1| unnamed protein product [Chondrus crispus]) HSP 1 Score: 115.931 bits (289), Expect = 2.716e-26 Identity = 71/170 (41.76%), Postives = 102/170 (60.00%), Query Frame = 0
Query: 150 EHLHLGQRVAKTIGTRTGWPNWVTLMAISALPVVELRGGVPVGLWMGIPAAQTFLLACLGNLIPV-PLILLV-LRNTPWLMEKVTPVLEKKLKDTTGAKMNWQALAIFVGVPLPGTGAWTGAAIAALFKLSYAESFLGIVVGILSAAAIMTALVKAGMWGAIAVGGGLLI 317
E L QR++ + +R G P+ + + +SALP VELR G+PVG + + +T LLA LGNL P+ PL+L++ +R L +V KK A ALA+FVGVPLPGTGAWTG+ +A + + + +SF + G++ AA+IMT L G GA+ V G LL+
Sbjct: 133 EKKPLSQRISDKLRSR-GLPDELVVFLVSALPAVELRAGIPVGFVLNMHPLKTLLLAVLGNLAPILPLMLILRVRFVQALAARVLDRARKKAAAVGNANSRAVALALFVGVPLPGTGAWTGSLVAFVLGMPFGQSFAALAAGVVMAASIMTVLCALGKVGAL-VAGTLLV 300
BLAST of EWM25686.1 vs. NCBI_GenBank
Match: gi|545704380|ref|XP_005704513.1| (small multidrug efflux protein, DMT family isoform 1 [Galdieria sulphuraria] >gi|545704382|ref|XP_005704514.1| small multidrug efflux protein, DMT family isoform 2 [Galdieria sulphuraria] >gi|452820957|gb|EME27993.1| small multidrug efflux protein, DMT family isoform 1 [Galdieria sulphuraria] >gi|452820958|gb|EME27994.1| small multidrug efflux protein, DMT family isoform 2 [Galdieria sulphuraria]) HSP 1 Score: 112.464 bits (280), Expect = 4.828e-25 Identity = 68/170 (40.00%), Postives = 103/170 (60.59%), Query Frame = 0
Query: 146 VEHGEHLHLG-QRVAKTIGTRTGWPNWVTLMAISALPVVELRGGVPVGLWMGIPAAQTFLLACLGNLIPVPLILLVLRN---TPWL--MEKVTPVLEKKLKDTTGAKMNWQALAIFVGVPLPGTGAWTGAAIAALFKLSYAESFLGIVVGILSAAAIMTALVKAGMWGAI 309
V+ + H G Q VAK + G P+ + L IS+LPV+ELRG +P+G+WMG Q + L+ LGNL+PVPL+L L++ W M + +++++ + T ++ ALA+FVG+PLPGTGAW+GA IA + + + + + I G+L A IM L K G GA+
Sbjct: 126 VKSSSNQHFGLQLVAKL--RKLGLPDALVLFIISSLPVLELRGAIPIGVWMGFSLVQVYFLSVLGNLLPVPLLLHGLKHQKVQKWFAPMLRRAEQMKQQIANETFREI---ALALFVGIPLPGTGAWSGAVIAFVLNMPFWGATISITGGVLIAGLIMLVLTKMGKTGAL 290
BLAST of EWM25686.1 vs. NCBI_GenBank
Match: gi|567143019|ref|XP_006395772.1| (hypothetical protein EUTSA_v10004613mg [Eutrema salsugineum] >gi|557092411|gb|ESQ33058.1| hypothetical protein EUTSA_v10004613mg [Eutrema salsugineum]) HSP 1 Score: 111.309 bits (277), Expect = 1.360e-24 Identity = 66/184 (35.87%), Postives = 100/184 (54.35%), Query Frame = 0
Query: 144 AAVEHGEHLHLGQRVAKTIGTRTGWPNWVTLMAISALPVVELRGGVPVGLWMGI-PAAQTFLLACLGNLIPVPLILLVLRNTPWLM-------EKVTPVLEKKLKDTTG--AKMNWQALAIFVGVPLPGTGAWTGAAIAALFKLSYAESFLGIVVGILSAAAIMTALVKAGMWGAIAVGGGLLI 317
AA + + G R+A T+ R GWP+ + A++ LPV+ELRG +PVG WM + P TF + LGN++PVP+I+L L+ + K+ +L K+ K+ G + W L +FV VP PGTGAWTGA IA++ + + + G++ A ++ LV G+ AI G L
Sbjct: 116 AAADSIKSSSFGLRIAATL-RRFGWPDEAVVFALATLPVIELRGAIPVGYWMQLKPTVLTF-FSVLGNMVPVPVIILYLKKFASFLAGKSRTASKLLEILFKRAKEKAGPVEEFQWLGLMLFVAVPFPGTGAWTGAIIASILDMPFWSAVSSNFCGVVLAGLLVNFLVNLGLKEAIVAGIALFF 297
BLAST of EWM25686.1 vs. NCBI_GenBank
Match: gi|1210523796|dbj|GAX17478.1| (ferredoxin--NADP+ reductase [Fistulifera solaris]) HSP 1 Score: 114.39 bits (285), Expect = 1.777e-24 Identity = 84/188 (44.68%), Postives = 110/188 (58.51%), Query Frame = 0
Query: 118 RVVAWACALATLLFMTTATSVPRALAAAVEHGEHLHLGQRVAKTIGTRTGWPNWVTLMAISALPVVELRGGVPVGLWMGIPAAQTFLLACLGNLIPVPLILLVLRNTPWLMEKVTPVL---EKKLKD--TTGAKMNWQALAIFVGVPLPGTGAWTGAAIAALFKLSYAESFLGIVVGILSAAAIMTAL 300
RV C+LA LL M T A A LHLGQ++A T G P+ L ISALP+VELRG +PVG+WMG+P ++ + LGN+IP+ +LL+LRN L + P+L EKK K+ + W +LA FVG+PLPGTGAWTGA A L + A +F I G++SA IMTA+
Sbjct: 84 RVAFGFCSLA-LLHMATLEPANAARKAKKAVEVPLHLGQKIANYFRT-FGIPDLGVLTIISALPIVELRGAIPVGIWMGLPISKVLPVCILGNMIPILPLLLLLRNKT-LKNAMNPILTQAEKKTKELGIGSVQKQWASLATFVGIPLPGTGAWTGAMGAFLLGMPLAVAFTSIFAGVVSAGVIMTAI 268 The following BLAST results are available for this feature:
BLAST of EWM25686.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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