rna4996, rna4996 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna4996
Unique Name	rna4996
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1395
Alignment location	CM002464.1:872297..873925 +

Link to JBrowse

Properties


Property Name	Value
Product	s-adenosylmethionine mitochondrial carrier protein
Orig transcript id	gnl\|cribi\|Naga_100279g7.10053.mrna
Orig protein id	gnl\|cribi\|Naga_100279g7.10053
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002464.1	supercontig	CM002464.1:872297..873925 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100279g7	gene4825	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna4996	rna4996-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM25692.1	cds4984	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002464.1:872297..873925+
coding sequence from alignment at CM002464.1:872297..873925+

mRNA sequence

>rna4996 ID=rna4996|Name=rna4996|organism=Nannochloropsis gaditana|type=mRNA|length=1395bp
GATTAAAAACAAAAATGTGCCCGATAAAGCCTTCTGAAATAATGCTTCGT
TCCTGACATGATTATTTTTGCACCTGGCAGGGAGATCCTACGTTTTAAGC
TATCGTCCTGGCCTTGATCGAAGTGGTACTGTTGCCGTCCCAGCATGGCA
ACAAACGCAACATCAAAATACCTGGTGCATTTTTTCCTTTTCTTTTTCTT
CGTCCTGCCGACCACCGTCACATTCGCTTTCAATCTCCCGCGTAATCCTG
CTCACCACAGTCATGTACGTTGCGAGATGGCCACGAGACATGCCTCCTCC
ACCACTGCGTCCCCTTCCTCTCCGATTACCTCCTCCCCTGAAGCCAGCGA
TGGAAGCACACGCCGCGAGCTACTCGAGTCCTATGGTCGACTCGGCGTAG
GGCTCGGTGCTTCGGCTTTGTTTCCATGGATCCCCTCATCTGCCCTTGCC
GCTTCGCGCCCTTCCTCCGATGCTCCTGTAGCGGTCCTGGGGGCTCGGGG
GAAAACGGGCAGGCTGATCGTACAACAACTCCTGGCAGAGGGGAAACAAG
TGCGTGCTCTGTCCTACCAACCTTTTGAATACGACGCAAAGAAAGACCTG
CCGGTCAATGTTGATCTCAGCCTCTTAACCTATGCAATTGGCGACGTTAC
AAAGTATGACACCCTGCCAGACGCAATCCGAGGCTCCAGCGCGGTGATAT
TCGCGTCTTCGGCCTCCAAAAAAGGCGGCAATGCACAAGCTGTGGACTGC
GACGGCGTGGAAAATATTGCCCGGGCTGCCATCTCCGAGAAAATACCCCG
TTTGCTGGTAATCTCCTCGGGCGCGGTGACGAAACCTGACTCGTTCGGGT
ATAAGATCACCAACATGTTTGCGCGCGGGATCATGGGACTTAAGCTCGAA
GGCGAAGATCGACTGCGGGCGTTATACAGGTCGTCAGCGCCTGCTGGGGT
CACGTACACAGTGCTCCGACCGGGGGGCTTGTCGAACGATAAGGGATTGG
GGGTCATTGGCTTGGAATTGAACCAGAAAGACACCATCATCGGCGAGATA
TCCCGAAATGACGTGGCCGCTGTGGCGGTACATGCTATCACAGCTCCAGA
GGCGGCGGATGTCACCTTTGAAGTGTACGAGATCGGGAGGCGTACGCCTC
TCCAACCCGAGTTCCCCAAGGAAAGTGGAATGGAAAGACGTGCCGAAAAG
TGGGAGGATATTTTCAAAGGCCTGGTGAAAGACCAGGATCTGCAAATAGC
TTAGCGCTTAGGGAGATAGGCTGATTGAATAAGTCTATTTTTTAGGTAGC
CAGTGGCGAACACTTGGAGTATAGGATATTCGGAAGCGAGCGTGTCGGAG
TGTATTTGTATTTGAAGAAATATACACTGGATGCTATATGCAAGT

protein sequence of rna4996

>rna4996-protein ID=rna4996-protein|Name=rna4996|organism=Nannochloropsis gaditana|type=polypeptide|length=542bp
MVAVMASGRPVSYSPPPLPFKPRRCPHLLFLLAFILASSWITAAGATWSG
IRHVSQRLSTNVVDLAPRAALSNGKSDASKVNRASTSRTPKTETAAIVPT
ESLTKLQSFFRQRNQRTEGIVPGKATGVPRVTLASQATSTCSSPARRRNH
PRPSLPPSPSFSSPLVALAATISAPFRPRKGRAAAAATGSRWSPSSAPPS
SFAFSSFLPTLPALHVNKTLTFWGNMLAGAVSRSCAQTAMHPANVVKTLL
QTKGAGELANLNVQILTRGAGAQFALSLPHGALAFAVLEATKSTLSSWFP
VNFAGPAFDFVSSAVSTTICSVISTPQMVLTDRIMAGYYPNLVHGVRTVL
KTDGVQGLYAGWFAALAQKIPSYGLTWVFFQQLKIARNRWMDHEATNGEN
FGMGALAAAATVCVMIPLDTVKTRIVTQAANPAAGVHYKGVWDCFSRVLK
EEGLKTFYAPLAPRLVSVVPMIGIQFGVYEFMKRTIAGMPEKGPREERRE
GGGWDAVKAWGRRKVPSLAPESDSPLSQPPLSEIFDEIEDAN

mRNA from alignment at CM002464.1:872297..873925+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna4996 ID=rna4996|Name=rna4996|organism=Nannochloropsis gaditana|type=mRNA|length=1629bp|location=Sequence derived from alignment at CM002464.1:872297..873925+ (Nannochloropsis gaditana)
ATGGTTGCTGTCATGGCTAGCGGGCGCCCGGTTTCATactctcctccgcc
cctcccattcAAGCCACGCCGCtgccctcacctcctcttcctccttgctt
ttaTCCTCGCATCATCATGGATTACGGCCGCTGGCGCTACATGGTCGGGT
ATTAGGCACGTGTCACAGCGTCTGAGTACAAATGTGGTGGATCTAGCACC
TAGGGCTGCGCTTTCTAATGGCAAATCCGATGCCAGCAAAGTCAACAGGG
CCTCGACATCAAGAACTCCGAAGACAGAGACGGCAGCCATCGTCCCCACG
GAAAGCCTCACGAAGCTTCAAAGCTTCTTTCGGCAAAGAAATCAACGTAC
AGAAGGAATAGTCCCGGGCAAAGCCACAGGTGTGCCCCGCGTCACTTTGG
CAAGTCAAGCCACTTCAACTTGTAGCTCCCCGGCGCGGAGAAGAAACcac
ccccggccctccctccctccctccccctccttttcctcgcccttgGTCGC
GCTAGCGGCCACAATTAGTgctcctttccgtcccagGAAGGGTcgtgccg
ctgccgccgccacagGCAGTCGGTggtccccctcctctgcccctccctca
tcctttgcattctcttccttcctccccaccctgcctGCCTTGCACGTCAA
CAAAACCCTTACGTTCTGGGGCAACATGCTGGCGGGTGCCGTGTCTCGTT
CCTGCGCGCAAACCGCCATGCACCCGGCCAACGTGGTGAAGACCCTGTTG
CAAACCAAAGGGGCCGGGGAGCTCGCCAATTTGAACGTCCAAATCTTGAc
cagaggggcgggggcccaatttgccctctcccttccccacgggGCCCTCG
CCTTCGCCGTCTTGGAGGCCACGAAGAGCACGCTGTCCTCCTGGTTCCCG
GTCAATTTTGCGGGCCCTGCCTTCGACTTTGTTTCCTCGGcggtctccac
caccatctgcTCCGTCATCAGCACGCCCCAAATGGTCCTCACGGACCGGA
TCATGGCCGGCTACTACCCAAACCTGGTGCACGGGGTCCGCACCGTCCTC
AAGACGGACGGGGTGCAGGGGCTGTACGCCGGCTGGTTCGCGGCCCTGGC
GCAAAAAATTCCGAGTTACGGGCTGACTTGGGTGTTTTTCCAGCAACtga
aaattgcgcgaaaccGTTGGATGGACCACGAAGCGACGAACGGGGAGAAT
TTCGGGATGGGGGCgttggcagcggcggcgacGGTGTGTGTGATGATCCC
TCTGGACACTGTTAAGACCCGCATCGTCACCCAAGCCGCCAACCCCGCGG
CCGGCGTGCACTACAAAGGCGTGTGGGACTGTTTCTCCCGTGtattgaag
gaggaaggtttGAAAACGTTCTACGCGCCCTTGGCGCCCAGGTTGGTGAG
CGTGGTGCCCATGATTGGGATCCAATTCGGTGTTTACGAATTTATGAAGC
GGACGATCGCAGGCATGCCGGAAAAGGGCccccgggaggaaaggagggag
gggggcgggtgGGACGCCGTCAAGGCCTGGGGTAGGAGAAAAGTCCCGAG
CTTGGCTCCAGAGTCGGACTCACCGCTCTCCCAGCCACCGCTGAGCGAGA
TTTTCGACGAAATTGAGGATGCGAATTAG

Coding sequence (CDS) from alignment at CM002464.1:872297..873925+

>rna4996 ID=rna4996|Name=rna4996|organism=Nannochloropsis gaditana|type=CDS|length=1629bp|location=Sequence derived from alignment at CM002464.1:872297..873925+ (Nannochloropsis gaditana)
ATGGTTGCTGTCATGGCTAGCGGGCGCCCGGTTTCATactctcctccgcc
cctcccattcAAGCCACGCCGCtgccctcacctcctcttcctccttgctt
ttaTCCTCGCATCATCATGGATTACGGCCGCTGGCGCTACATGGTCGGGT
ATTAGGCACGTGTCACAGCGTCTGAGTACAAATGTGGTGGATCTAGCACC
TAGGGCTGCGCTTTCTAATGGCAAATCCGATGCCAGCAAAGTCAACAGGG
CCTCGACATCAAGAACTCCGAAGACAGAGACGGCAGCCATCGTCCCCACG
GAAAGCCTCACGAAGCTTCAAAGCTTCTTTCGGCAAAGAAATCAACGTAC
AGAAGGAATAGTCCCGGGCAAAGCCACAGGTGTGCCCCGCGTCACTTTGG
CAAGTCAAGCCACTTCAACTTGTAGCTCCCCGGCGCGGAGAAGAAACcac
ccccggccctccctccctccctccccctccttttcctcgcccttgGTCGC
GCTAGCGGCCACAATTAGTgctcctttccgtcccagGAAGGGTcgtgccg
ctgccgccgccacagGCAGTCGGTggtccccctcctctgcccctccctca
tcctttgcattctcttccttcctccccaccctgcctGCCTTGCACGTCAA
CAAAACCCTTACGTTCTGGGGCAACATGCTGGCGGGTGCCGTGTCTCGTT
CCTGCGCGCAAACCGCCATGCACCCGGCCAACGTGGTGAAGACCCTGTTG
CAAACCAAAGGGGCCGGGGAGCTCGCCAATTTGAACGTCCAAATCTTGAc
cagaggggcgggggcccaatttgccctctcccttccccacgggGCCCTCG
CCTTCGCCGTCTTGGAGGCCACGAAGAGCACGCTGTCCTCCTGGTTCCCG
GTCAATTTTGCGGGCCCTGCCTTCGACTTTGTTTCCTCGGcggtctccac
caccatctgcTCCGTCATCAGCACGCCCCAAATGGTCCTCACGGACCGGA
TCATGGCCGGCTACTACCCAAACCTGGTGCACGGGGTCCGCACCGTCCTC
AAGACGGACGGGGTGCAGGGGCTGTACGCCGGCTGGTTCGCGGCCCTGGC
GCAAAAAATTCCGAGTTACGGGCTGACTTGGGTGTTTTTCCAGCAACtga
aaattgcgcgaaaccGTTGGATGGACCACGAAGCGACGAACGGGGAGAAT
TTCGGGATGGGGGCgttggcagcggcggcgacGGTGTGTGTGATGATCCC
TCTGGACACTGTTAAGACCCGCATCGTCACCCAAGCCGCCAACCCCGCGG
CCGGCGTGCACTACAAAGGCGTGTGGGACTGTTTCTCCCGTGtattgaag
gaggaaggtttGAAAACGTTCTACGCGCCCTTGGCGCCCAGGTTGGTGAG
CGTGGTGCCCATGATTGGGATCCAATTCGGTGTTTACGAATTTATGAAGC
GGACGATCGCAGGCATGCCGGAAAAGGGCccccgggaggaaaggagggag
gggggcgggtgGGACGCCGTCAAGGCCTGGGGTAGGAGAAAAGTCCCGAG
CTTGGCTCCAGAGTCGGACTCACCGCTCTCCCAGCCACCGCTGAGCGAGA
TTTTCGACGAAATTGAGGATGCGAATTAG

Synonyms

Publications