rna4995, rna4995 (mRNA) Nannochloropsis gaditana

Overview
Namerna4995
Unique Namerna4995
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length450
Alignment locationCM002464.1:870508..871902 -

Link to JBrowse

Properties
Property NameValue
Productnad-dependent epimerase dehydratase
Orig transcript idgnl|cribi|Naga_100279g6.10051.mrna
Orig protein idgnl|cribi|Naga_100279g6.10051
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002464.1supercontigCM002464.1:870508..871902 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100279g6gene4824Nannochloropsis gaditana (N. gaditana B-31)gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM25690.1cds4983Nannochloropsis gaditana (N. gaditana B-31)CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna4995rna4995-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna4995 ID=rna4995|Name=rna4995|organism=Nannochloropsis gaditana|type=mRNA|length=450bp
ATGGAGGCTATCTGGCGGCGGGGGAGGGTCAAGGCTTTCCTATGGCGGTG
GATTGAGAGGCAGTATCGACGGCGGGAGGGAAAATTGGTGAGTGCATTAA
CGGATGAGGTACGGGCTTATCGCCTTGCCTGTGCGTCCGAGGGCGAAGAA
GCGACGCGAAGTGGGAACGCTCGAGACGCGCAGCATGAAGAGGATAAGAG
AGGCGTCTTGAGGCAACCAGGGAAGGAATTGGAGCTGTTTAGTCTCCACC
CACCCAGTCAGCACCAGCAGGCGCTCCCACAGCCACGTCGACCCCAACCC
CGACCACGTCTTGATGACCGCGGGAGAGCGACGTCAAAACATCGCGTTGT
GAAGGAAGGCTTCGTGTGGAAATTAAGGACCCTTGAGGATGTCTGTGGTC
ATGTCCATAGCATGCATCTAGACTTCCCTAAAAGTGCAAGACTTAAATAG
back to top

protein sequence of rna4995

>rna4995-protein ID=rna4995-protein|Name=rna4995|organism=Nannochloropsis gaditana|type=polypeptide|length=369bp
MATNATSKYLVHFFLFFFFVLPTTVTFAFNLPRNPAHHSHVRCEMATRHA
SSTTASPSSPITSSPEASDGSTRRELLESYGRLGVGLGASALFPWIPSSA
LAASRPSSDAPVAVLGARGKTGRLIVQQLLAEGKQVRALSYQPFEYDAKK
DLPVNVDLSLLTYAIGDVTKYDTLPDAIRGSSAVIFASSASKKGGNAQAV
DCDGVENIARAAISEKIPRLLVISSGAVTKPDSFGYKITNMFARGIMGLK
LEGEDRLRALYRSSAPAGVTYTVLRPGGLSNDKGLGVIGLELNQKDTIIG
EISRNDVAAVAVHAITAPEAADVTFEVYEIGRRTPLQPEFPKESGMERRA
EKWEDIFKGLVKDQDLQIA
back to top

mRNA from alignment at CM002464.1:870508..871902-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna4995 ID=rna4995|Name=rna4995|organism=Nannochloropsis gaditana|type=mRNA|length=1395bp|location=Sequence derived from alignment at CM002464.1:870508..871902- (Nannochloropsis gaditana)
GATTAAAAACAAAAATGTGCCCGATAAAGCCTTCTGAAATAATGCTTCGT
TCCTGACATGATTATTTTTGCACCTGGCAGGGAGATCCTACGTTTTAAGC
TATCGTCCTGGCCTTGATCGAAGTGGTACTGTTGCCGTCCCAGCATGGCA
ACAAACGCAACATCAAAATACCTGGTGCATTTTTTCCTTTTCTTTTTCTT
CGTCCTGCCGACCACCGTCACATTCGCTTTCAATCTCCCGCGTAATCCTG
CTCACCACAGTCATGTACGTTGCGAGATGGCCACGAGACATGCCTCCTCC
ACCACTGCGTCCCCTTCCTCTCCGATTACCTCCTCCCCTGAAGCCAGCGA
TGGAAGCACACGCCGCGAGCTACTCGAGTCCTATGGTCGACTCGGCGTAG
GGCTCGGTGCTTCGGCTTTGTTTCCATGGATCCCCTCATCTGCCCTTGCC
GCTTCGCGCCCTTCCTCCGATGCTCCTGTAGCGGTCCTGGGGGCTCGGGG
GAAAACGGGCAGGCTGATCGTACAACAACTCCTGGCAGAGGGGAAACAAG
TGCGTGCTCTGTCCTACCAACCTTTTGAATACGACGCAAAGAAAGACCTG
CCGGTCAATGTTGATCTCAGCCTCTTAACCTATGCAATTGGCGACGTTAC
AAAGTATGACACCCTGCCAGACGCAATCCGAGGCTCCAGCGCGGTGATAT
TCGCGTCTTCGGCCTCCAAAAAAGGCGGCAATGCACAAGCTGTGGACTGC
GACGGCGTGGAAAATATTGCCCGGGCTGCCATCTCCGAGAAAATACCCCG
TTTGCTGGTAATCTCCTCGGGCGCGGTGACGAAACCTGACTCGTTCGGGT
ATAAGATCACCAACATGTTTGCGCGCGGGATCATGGGACTTAAGCTCGAA
GGCGAAGATCGACTGCGGGCGTTATACAGGTCGTCAGCGCCTGCTGGGGT
CACGTACACAGTGCTCCGACCGGGGGGCTTGTCGAACGATAAGGGATTGG
GGGTCATTGGCTTGGAATTGAACCAGAAAGACACCATCATCGGCGAGATA
TCCCGAAATGACGTGGCCGCTGTGGCGGTACATGCTATCACAGCTCCAGA
GGCGGCGGATGTCACCTTTGAAGTGTACGAGATCGGGAGGCGTACGCCTC
TCCAACCCGAGTTCCCCAAGGAAAGTGGAATGGAAAGACGTGCCGAAAAG
TGGGAGGATATTTTCAAAGGCCTGGTGAAAGACCAGGATCTGCAAATAGC
TTAGCGCTTAGGGAGATAGGCTGATTGAATAAGTCTATTTTTTAGGTAGC
CAGTGGCGAACACTTGGAGTATAGGATATTCGGAAGCGAGCGTGTCGGAG
TGTATTTGTATTTGAAGAAATATACACTGGATGCTATATGCAAGT
back to top

Coding sequence (CDS) from alignment at CM002464.1:870508..871902-

>rna4995 ID=rna4995|Name=rna4995|organism=Nannochloropsis gaditana|type=CDS|length=1110bp|location=Sequence derived from alignment at CM002464.1:870508..871902- (Nannochloropsis gaditana)
ATGGCAACAAACGCAACATCAAAATACCTGGTGCATTTTTTCCTTTTCTT
TTTCTTCGTCCTGCCGACCACCGTCACATTCGCTTTCAATCTCCCGCGTA
ATCCTGCTCACCACAGTCATGTACGTTGCGAGATGGCCACGAGACATGCC
TCCTCCACCACTGCGTCCCCTTCCTCTCCGATTACCTCCTCCCCTGAAGC
CAGCGATGGAAGCACACGCCGCGAGCTACTCGAGTCCTATGGTCGACTCG
GCGTAGGGCTCGGTGCTTCGGCTTTGTTTCCATGGATCCCCTCATCTGCC
CTTGCCGCTTCGCGCCCTTCCTCCGATGCTCCTGTAGCGGTCCTGGGGGC
TCGGGGGAAAACGGGCAGGCTGATCGTACAACAACTCCTGGCAGAGGGGA
AACAAGTGCGTGCTCTGTCCTACCAACCTTTTGAATACGACGCAAAGAAA
GACCTGCCGGTCAATGTTGATCTCAGCCTCTTAACCTATGCAATTGGCGA
CGTTACAAAGTATGACACCCTGCCAGACGCAATCCGAGGCTCCAGCGCGG
TGATATTCGCGTCTTCGGCCTCCAAAAAAGGCGGCAATGCACAAGCTGTG
GACTGCGACGGCGTGGAAAATATTGCCCGGGCTGCCATCTCCGAGAAAAT
ACCCCGTTTGCTGGTAATCTCCTCGGGCGCGGTGACGAAACCTGACTCGT
TCGGGTATAAGATCACCAACATGTTTGCGCGCGGGATCATGGGACTTAAG
CTCGAAGGCGAAGATCGACTGCGGGCGTTATACAGGTCGTCAGCGCCTGC
TGGGGTCACGTACACAGTGCTCCGACCGGGGGGCTTGTCGAACGATAAGG
GATTGGGGGTCATTGGCTTGGAATTGAACCAGAAAGACACCATCATCGGC
GAGATATCCCGAAATGACGTGGCCGCTGTGGCGGTACATGCTATCACAGC
TCCAGAGGCGGCGGATGTCACCTTTGAAGTGTACGAGATCGGGAGGCGTA
CGCCTCTCCAACCCGAGTTCCCCAAGGAAAGTGGAATGGAAAGACGTGCC
GAAAAGTGGGAGGATATTTTCAAAGGCCTGGTGAAAGACCAGGATCTGCA
AATAGCTTAG
back to top
Synonyms
Publications