rna4987, rna4987 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna4987
Unique Name	rna4987
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	2199
Alignment location	CM002464.1:850822..853257 +

Link to JBrowse

Properties


Property Name	Value
Product	atp-dependent protease
Orig transcript id	gnl\|cribi\|Naga_100222g7.2411.mrna
Orig protein id	gnl\|cribi\|Naga_100222g7.2411
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002464.1	supercontig	CM002464.1:850822..853257 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100222g7	gene4816	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna4987	rna4987-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM25698.1	cds4975	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002464.1:850822..853257+
coding sequence from alignment at CM002464.1:850822..853257+

mRNA sequence

>rna4987 ID=rna4987|Name=rna4987|organism=Nannochloropsis gaditana|type=mRNA|length=2199bp
GGGTAGGAAAACATGGTATTTCGTGTAAAATTACCATTGCCGTCCTCGGC
GGACGATGTATTTATGGACGAGGAGGGCGTGCTAATAGACATCACGAGTC
CAGTCCCATGGGGAGGTACGAAGTCTGTGACCACAGAGGAGACTTCGATT
GACTTGCCCGTGCGAGAAATAGAAACATGCGGCCTTGCCTACTTTCGATA
TCAGTTGAAGAGACAGGCGATCGAGGCAGGAGAGGCAGGGAGCGGAGGCT
TTGATCCATGTAAACGCCTCAGAGACGAGGCCGAAGGGGAGGAGGAAATA
GGGGAGGGCGGGGAGGGCGGCTCGGATGACACGACATTCCGGTTTCCCAA
GAAGACCCTGACACCTAAGGATGTGAAGAAGATGGATTACTACGAATTGT
TGGGCTTGGGGCATTTATCAGCGACGGAGGTCGGTCCAGACTTATTGAAG
AAAGCATACCGAAAAGCGCTCCTTCTGTACCACCCGGACAAGACTGGTCG
CGGAGATCGCGACGAGGTCTTCATCGAGGTGCAAAAGGCGTACGAAACGC
TGAGCGACGGACGCAAAAAACGCGCGTACGATTCGGAGATGAATTTCGAC
GAGAGCATCCCGACGGGAAGGGAGAAGGGTGACTTTTTCAAGGTGTATGG
CCCTGTCTTTGACCGGAACGCCCGCTTCGCCGTGAAACGGCCGGTGCCAA
ATCTAGGTCGGGAGGACAGCAAAATCGAGGACGTGTACCGGTTCTACGAC
TACTGGGGTCGATTTGAAAGTTGGCGGGATTTCAGTTTGAAGGCGGCGGA
GGAAAACGATTTCCATGTGGAGGCCGCCGGTTCCAGGGAAGAGAAACGAT
GGATGCAGAAGGAGAACGACAAGCTGGCGCGGGCCATGAAAAAGGAGGAG
TACAAGCGGTTGGCCACCCTGGTGGAGAGAGCACGGACGGCCGATCCTCG
TTTGAAGCGGGCGAAGGAGTTGGAGAAGGAGAAGAAGGAGGCGATCAAAG
CCGCCCGAACCGCGGCGGCGCGGGAACGGGAAGTGCAAAGGCGCAAAGAT
GCGGAGGAAGAGACGAAGAAGAAGGAAGAGGAAGAAGCACGGTTGAAAGA
GGAGAGAGCGCGGGCGAAGCTGGTTCGGGACCAAGCCAAGAAGAGGATGC
GTAGTGCCCGAAGTCGGTTTCGCGCCCTGTGCAGCCTGTTGCACCGCCAA
GAGGAGGAGGCCGTGGGCGAAGAAACGGCGGGACGAAGGGTGGTGTCGGT
CGAGGAGGAGGATTTCATGTTCGAGCACGTGGACGTGATGGGGATGGAGG
AGGCGGTGGCGGCCTTGGAGGGGGTACCGTACGTCTACCAGGCGGAGCCG
GACGGGCCATCCCCCCCCCCGGCCCGGGTATCGCCTGCAGGGGTGGCACG
CGTCACCGCGATCGTGGAGCGGGAGCGCCAAAAGAGACGGGAGGCAAAAC
GGGAGGAGGAAACAAGCAAGGCCGCGTCTGGACTCGCCCACGCGTCGGCT
GAAAAGGACGGAGGAGAGGAGTCCTCCCCGAAGGAAGCGGCGTGGACCGA
AGAGGAGCTCGGGGTGCTGGCCAAGGCAGTGGTGCGCTTCCCCGCGGGCA
CGCAAAAACGCTGGCAGTGCATTGCCGACTATTTGAACCACATGGTCCGG
GGCGCGTCTTTGCGGAGCAAGGAGGAATGCATCAAGCAGTACCAGGTCGT
TCAGGCAGGGGTCAGTAAGAGCCGCGTGGTGGCAGCCACGGGGGGCGCCG
GGGCGGGGGGTGGAAGCGAGGGAAGAAAGTCGGGGAAGACGGGGACGAGC
AGGGGGGAGGACAATGGAAAGGCCGTGGCAAGCGGGGATGGGTGGAGTCA
GGAGCAACAGAAGCAATTGGAGGCCGGGCTCGTGACTTATCCTGCCAGCA
TGGAGAAGAACGAAAGGTGGAAGAGGATATCGGAGGGCGTGCAAGGCAAA
AGCAAGAAGGAGTGTGCAGAACGCTACAAGGCACTGCGGGCGGCCGTGGC
GAAAAAGAAAGAGGAAGCAGCCGGCGCGAAAACCCAGCCCCTCAAGTAGA
AAGGGAAGCGGAGGGTACGAGGAGGATGGTACGGGCTACAAAATCTCGCC
ATTGGGGACAGAAGGACTGCTCGTGCAGCAATTTTGCAAAGAAACCAGCA
TGCGGACGCAACGTGGTTGTGAGGCGACACCAGACGGTCGCCACTGTCC

protein sequence of rna4987

>rna4987-protein ID=rna4987-protein|Name=rna4987|organism=Nannochloropsis gaditana|type=polypeptide|length=478bp
MAFTGVAPRQPPESPRSRLSPCLYSLPLLVVLFFLPAASPQTSWGSTLDA
TSNFFKSTWDSLATYTGYHDFCPFAMDFSETARRAVQAKIKCQDRALTAI
TTGLSHWEMTLMKDHPRPLVLAFTGPTGVGKTETAHVIARAILPKTELVG
SGKRPRGLLVFRGEDFADRRANVTSYIDVIKASLFKHLERCQGHAVVIFD
EVQKVVPGTLDALAEAISEHPTLTYYPAEDPRVIHRIDTSHVVFFLISDI
GWEDMLALLVAHGGHAAALPPHLLSQRVKAALDAQWQRLRCGKMIDTVVP
FLPLSQADMREVLDVKLAEMSEEHEGRLWARLETTEEVRAHLVQKPFVKY
VGYGLEDEGEGEDEGEGGGESEGKDCRAGKEVYWYAEFGARNLQTGGPLH
ALESAIVENMKPWRPLEVLDVRLNSQTGETELRWCPQETWMGGKGGEGGA
GTASRLWEEAGATGCDLRWAGDLKLKVG

mRNA from alignment at CM002464.1:850822..853257+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna4987 ID=rna4987|Name=rna4987|organism=Nannochloropsis gaditana|type=mRNA|length=2436bp|location=Sequence derived from alignment at CM002464.1:850822..853257+ (Nannochloropsis gaditana)
GGTTTTATCATCGGTTGACACGGCGCGGTGCGTGGgagtggaggcgggcg
cccgGACGAGGCTTTAAGGAGCTTGGGAGCATCCTAGGAGGTACAAGGTG
AACGCCGTCCCGGTGCCGCGTCGGCTGGCTCGATATTTTGATGGCCTTCA
CGGGAGTTGCTCCACGGCAACCACCAGAATCCCCGCGGTcacgcctctcc
ccctgttTGTAcagtctccctctcctcgtcgtccttttctttctgcccgc
cgcctccccccaaaCCTCCTGGGGGTCTACCCTGGACGCTACCAgcaatt
tttttaaatccACGTGGGATAGCCTCGCGACCTATACAGGCTATCATGAT
TTCTGTCCGTTTGCCATGGATTTCTCGGAAACGGCACGGCGGGCCGTGCA
AGCCAAAATAAAGTGCCAAGACAGGGCCTTGACAGCCATCACCACGGGCC
TCAGTCATTGGGAGATGACATTGATGAAGGACCATCCCCGACCCTTGGTC
TTGGCGTTCACGGGGCCGACAGGGGTGGGCAAGACAGAGACAGCGCATGT
CATCGCCCGGGCCATTTTGCCCAAAACGGAGCTGGTGGGGAGTGGCAAAC
GACCTCGGGGATTGTTGGTCTTTCGGGGGGAGGACTTTGCGGATCGGCGC
GCAAATGTCACCAGGTATGGGGCCAGGGAAGGCACGGTCTGATGGCTCTC
CTCTTGAACTGTTGCTTTCTTTCATTTGTTGCTCCCTCTGTCAGTCCTGG
ATAtgaccccgccctcggttTCGGTCCACACACTCCATCACCgttcccct
ctctcgccacctcctcctctgttttGGGTTCCACAGCTACATTGACGTCA
TCAAAGCCAGCCTTTTCAAGCACTTAGAGAGGTGTCAGGGCCATGCAGTG
GTCATCTTCGACGAAGTGCAGAAAGGTTCGATTCtggctcccctccctcc
ccacccatctttccctccctccctccccatcccctccccgggtAGTGATC
ACGGACTTCCtaccctcactccctccctccctccctccctttctccctcc
cctcacaccctccctcccacagtCGTCCCCGGCACGCTGGACGCCCTGGC
CGAGGCCATCTCCGAGCATCCCACCCTGACCTACTACCCCGCCGAGGACC
CCCGCGTCATCCACCGGATCGACACCAGCCACGTGGTCTTTTTCCTCATC
AGTGACATTGGCTGGGAGGACATGCTGGCCCTGCTGGTGGCGCACGGGGG
ACACGccgctgcccttcccccccacctgcTCTCCCAACGGGtcaaggcgg
ccttggacgcGCAATGGCAACGGCTTCGCTGCGGGAAAATGATCGACACG
GTCGTCCCCTTTCTACCCTTATCCCAGGCAGACATGCGGGAAGTATTGGA
CGTAAAGCTGGCGGAGATGAGCGAGGAGCACGAGGGGAGGTTGTGGGCTC
GGTTGGAGACGACTGAGGAGGTTCGGGCGCACTTGGTCCAGAAGCCCTTT
GTCAAATACGTTGGGTACGggttggaggacgagggcgagggcgaggacga
gggcgagggcgggggagagagcgaagggaaggattgtcgggcaggaaagg
aggtgTATTGGTACGCGGAATTTGGCGCGAGGAATTTGCAGACGGGGGGA
CCGTTACATGCCTTGGAGAGTGCGATTGTGGAGAACATGAAACCATGGCG
GCCgctggaggtgctggacgtGCGCCTGAACAGTCAGACCGGGGAGACGG
AACTAAGGTGGTGTCCGCAAGAGAcgtggatgggggggaaagggggagag
ggaggggcagggacggcaTCGCggctgtgggaggaagcgggggcgaCTGG
ATGTGACCTGCGATGGGCGGGTGACTTGAAATTGAAGGTGGGCTAAAaaa
ggcctgggaggggttGTCCTGACCCCGGGAAAGGAGCTATTAGAAAGGAC
CATCGGATTCTCCTCGGCGCGCGGCGTCGTCCAGGAGGTTCGAGGGTGTC
AGAATGATCGAATGGGCGCCAGTGCGGTGGCAAGCAAGAGCCGTGGATCA
GCAACAGACCCTGACCAGGGATTGGGTGAGGGACAGGAGGCcggaacggg
aggaggatggcagagcgaggagaggatactggtggaggtcgagggaggat
tgCTTCGgtagagggaaaggaaaagggtcgCCTGAAAGAAATTTGTAACG
ATAAGgtcatttaaaaaaatgtaaGAACAGAAGGACGTGGTCCAGAGCGT
CGCGCGTCAGTGAAAAGCGAAATGAACACTTTCGACACGACAAATTTGAG
GCCGTGACTGCCTCCCTTTTATCGAGGCCACAAGGCACCTTTGCTTCCTT
GAGCAAAACCCGGGGGTGCCGCGTACGTCCCGGCCATTCCCCACCCCACA
CATACATCCTACATCCCAGTCTAATGCccgccgtca

Coding sequence (CDS) from alignment at CM002464.1:850822..853257+

>rna4987 ID=rna4987|Name=rna4987|organism=Nannochloropsis gaditana|type=CDS|length=4311bp|location=Sequence derived from alignment at CM002464.1:850822..853257+ (Nannochloropsis gaditana)
ATGGCCTTCACGGGAGTTGCTCCACGGCAACCACCAGAATCCCCGCGGTc
acgcctctccccctgttTGTAcagtctccctctcctcgtcgtccttttct
ttctgcccgccgcctccccccaaaCCTCCTGGGGGTCTACCCTGGACGCT
ACCAgcaatttttttaaatccACGTGGGATAGCCTCGCGACCTATACAGG
CTATCATGATTTCTGTCCGTTTGCCATGGATTTCTCGGAAACGGCACGGC
GGGCCGTGCAAGCCAAAATAAAGTGCCAAGACAGGGCCTTGACAGCCATC
ACCACGGGCCTCAGTCATTGGGAGATGACATTGATGAAGGACCATCCCCG
ACCCTTGGTCTTGGCGTTCACGGGGCCGACAGGGGTGGGCAAGACAGAGA
CAGCGCATGTCATCGCCCGGGCCATTTTGCCCAAAACGGAGCTGGTGGGG
AGTGGCAAACGACCTCGGGGATTGTTGGTCTTTCGGGGGGAGGACTTTGC
GGATCGGCGCGCAAATGTCACCAGCTACATTGACGTCATCAAAGCCAGCC
TTTTCAAGCACTTAGAGAGGTGTCAGGGCCATGCAGTGGTCATCTTCGAC
GAAGTGCAGAAAGtCGTCCCCGGCACGCTGGACGCCCTGGCCGAGGCCAT
CTCCGAGCATCCCACCCTGACCTACTACCCCGCCGAGGACCCCCGCGTCA
TCCACCGGATCGACACCAGCCACGTGGTCTTTTTCCTCATCAGTGACATT
GGCTGGGAGGACATGCTGGCCCTGCTGGTGGCGCACGGGGGACACGccgc
tgcccttcccccccacctgcTCTCCCAACGGGtcaaggcggccttggacg
cGCAATGGCAACGGCTTCGCTGCGGGAAAATGATCGACACGGTCGTCCCC
TTTCTACCCTTATCCCAGGCAGACATGCGGGAAGTATTGGACGTAAAGCT
GGCGGAGATGAGCGAGGAGCACGAGGGGAGGTTGTGGGCTCGGTTGGAGA
CGACTGAGGAGGTTCGGGCGCACTTGGTCCAGAAGCCCTTTGTCAAATAC
GTTGGGTACGggttggaggacgagggcgagggcgaggacgagggcgaggg
cgggggagagagcgaagggaaggattgtcgggcaggaaaggaggtgTATT
GGTACGCGGAATTTGGCGCGAGGAATTTGCAGACGGGGGGACCGTTACAT
GCCTTGGAGAGTGCGATTGTGGAGAACATGAAACCATGGCGGCCgctgga
ggtgctggacgtGCGCCTGAACAGTCAGACCGGGGAGACGGAACTAAGGT
GGTGTCCGCAAGAGAcgtggatgggggggaaagggggagagggaggggca
gggacggcaTCGCggctgtgggaggaagcgggggcgaCTGGATGTGACCT
GCGATGGGCGGGTGACTTGAAATTGAAGGTGGGCTAAATGGCCTTCACGG
GAGTTGCTCCACGGCAACCACCAGAATCCCCGCGGTcacgcctctccccc
tgttTGTAcagtctccctctcctcgtcgtccttttctttctgcccgccgc
ctccccccaaaCCTCCTGGGGGTCTACCCTGGACGCTACCAgcaattttt
ttaaatccACGTGGGATAGCCTCGCGACCTATACAGGCTATCATGATTTC
TGTCCGTTTGCCATGGATTTCTCGGAAACGGCACGGCGGGCCGTGCAAGC
CAAAATAAAGTGCCAAGACAGGGCCTTGACAGCCATCACCACGGGCCTCA
GTCATTGGGAGATGACATTGATGAAGGACCATCCCCGACCCTTGGTCTTG
GCGTTCACGGGGCCGACAGGGGTGGGCAAGACAGAGACAGCGCATGTCAT
CGCCCGGGCCATTTTGCCCAAAACGGAGCTGGTGGGGAGTGGCAAACGAC
CTCGGGGATTGTTGGTCTTTCGGGGGGAGGACTTTGCGGATCGGCGCGCA
AATGTCACCAGCTACATTGACGTCATCAAAGCCAGCCTTTTCAAGCACTT
AGAGAGGTGTCAGGGCCATGCAGTGGTCATCTTCGACGAAGTGCAGAAAG
tCGTCCCCGGCACGCTGGACGCCCTGGCCGAGGCCATCTCCGAGCATCCC
ACCCTGACCTACTACCCCGCCGAGGACCCCCGCGTCATCCACCGGATCGA
CACCAGCCACGTGGTCTTTTTCCTCATCAGTGACATTGGCTGGGAGGACA
TGCTGGCCCTGCTGGTGGCGCACGGGGGACACGccgctgcccttcccccc
cacctgcTCTCCCAACGGGtcaaggcggccttggacgcGCAATGGCAACG
GCTTCGCTGCGGGAAAATGATCGACACGGTCGTCCCCTTTCTACCCTTAT
CCCAGGCAGACATGCGGGAAGTATTGGACGTAAAGCTGGCGGAGATGAGC
GAGGAGCACGAGGGGAGGTTGTGGGCTCGGTTGGAGACGACTGAGGAGGT
TCGGGCGCACTTGGTCCAGAAGCCCTTTGTCAAATACGTTGGGTACGggt
tggaggacgagggcgagggcgaggacgagggcgagggcgggggagagagc
gaagggaaggattgtcgggcaggaaaggaggtgTATTGGTACGCGGAATT
TGGCGCGAGGAATTTGCAGACGGGGGGACCGTTACATGCCTTGGAGAGTG
CGATTGTGGAGAACATGAAACCATGGCGGCCgctggaggtgctggacgtG
CGCCTGAACAGTCAGACCGGGGAGACGGAACTAAGGTGGTGTCCGCAAGA
GAcgtggatgggggggaaagggggagagggaggggcagggacggcaTCGC
ggctgtgggaggaagcgggggcgaCTGGATGTGACCTGCGATGGGCGGGT
GACTTGAAATTGAAGGTGGGCTAAATGGCCTTCACGGGAGTTGCTCCACG
GCAACCACCAGAATCCCCGCGGTcacgcctctccccctgttTGTAcagtc
tccctctcctcgtcgtccttttctttctgcccgccgcctccccccaaaCC
TCCTGGGGGTCTACCCTGGACGCTACCAgcaatttttttaaatccACGTG
GGATAGCCTCGCGACCTATACAGGCTATCATGATTTCTGTCCGTTTGCCA
TGGATTTCTCGGAAACGGCACGGCGGGCCGTGCAAGCCAAAATAAAGTGC
CAAGACAGGGCCTTGACAGCCATCACCACGGGCCTCAGTCATTGGGAGAT
GACATTGATGAAGGACCATCCCCGACCCTTGGTCTTGGCGTTCACGGGGC
CGACAGGGGTGGGCAAGACAGAGACAGCGCATGTCATCGCCCGGGCCATT
TTGCCCAAAACGGAGCTGGTGGGGAGTGGCAAACGACCTCGGGGATTGTT
GGTCTTTCGGGGGGAGGACTTTGCGGATCGGCGCGCAAATGTCACCAGCT
ACATTGACGTCATCAAAGCCAGCCTTTTCAAGCACTTAGAGAGGTGTCAG
GGCCATGCAGTGGTCATCTTCGACGAAGTGCAGAAAGtCGTCCCCGGCAC
GCTGGACGCCCTGGCCGAGGCCATCTCCGAGCATCCCACCCTGACCTACT
ACCCCGCCGAGGACCCCCGCGTCATCCACCGGATCGACACCAGCCACGTG
GTCTTTTTCCTCATCAGTGACATTGGCTGGGAGGACATGCTGGCCCTGCT
GGTGGCGCACGGGGGACACGccgctgcccttcccccccacctgcTCTCCC
AACGGGtcaaggcggccttggacgcGCAATGGCAACGGCTTCGCTGCGGG
AAAATGATCGACACGGTCGTCCCCTTTCTACCCTTATCCCAGGCAGACAT
GCGGGAAGTATTGGACGTAAAGCTGGCGGAGATGAGCGAGGAGCACGAGG
GGAGGTTGTGGGCTCGGTTGGAGACGACTGAGGAGGTTCGGGCGCACTTG
GTCCAGAAGCCCTTTGTCAAATACGTTGGGTACGggttggaggacgaggg
cgagggcgaggacgagggcgagggcgggggagagagcgaagggaaggatt
gtcgggcaggaaaggaggtgTATTGGTACGCGGAATTTGGCGCGAGGAAT
TTGCAGACGGGGGGACCGTTACATGCCTTGGAGAGTGCGATTGTGGAGAA
CATGAAACCATGGCGGCCgctggaggtgctggacgtGCGCCTGAACAGTC
AGACCGGGGAGACGGAACTAAGGTGGTGTCCGCAAGAGAcgtggatgggg
gggaaagggggagagggaggggcagggacggcaTCGCggctgtgggagga
agcgggggcgaCTGGATGTGACCTGCGATGGGCGGGTGACTTGAAATTGA
AGGTGGGCTAA

Synonyms

Publications